MELO3C027814 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027814
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	40S ribosomal protein S13
Location	chr11: 5601047 .. 5601202 (-)
RNA-Seq Expression	MELO3C027814
Synteny	MELO3C027814

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAAGACTCCAAGTTCAGATTGATTCTTGTTGATTCTTGA

mRNA sequence

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAAGACTCCAAGTTCAGATTGATTCTTGTTGATTCTTGA

Coding sequence (CDS)

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAAGACTCCAAGTTCAGATTGATTCTTGTTGATTCTTGA

Protein sequence

MCVFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

Homology

[Close]

BLAST of MELO3C027814 vs. NCBI nr
Match: KAA0043612.1 (40S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-14
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   MCVFLLL--SKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +C+ ++L  S GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 62  VCIGVILRDSHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 114

[Close]

BLAST of MELO3C027814 vs. NCBI nr
Match: ABW90418.1 (putative ribosomal protein S13 [Barentsia elongata])

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-14
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 5   LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +L +KGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of MELO3C027814 vs. NCBI nr
Match: KAA0051790.1 (putative ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 3.8e-14
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MCVFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLI 48
          MCVFLLLSKGLAPEIPEDLYHLIKK VSIRKHLERNRKDKDSK + +
Sbjct: 1  MCVFLLLSKGLAPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKAKFV 47

[Close]

BLAST of MELO3C027814 vs. NCBI nr
Match: KAA0049888.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-14
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
          +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]

BLAST of MELO3C027814 vs. NCBI nr
Match: TYK07625.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK14810.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK15131.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK22659.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-14
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
          +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]

BLAST of MELO3C027814 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-16
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5   LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of MELO3C027814 vs. ExPASy Swiss-Prot
Match: P62299 (40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-16
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           V +L +KG+APEIPEDLYHLIKKAV+IRKHLERNRKDKDSK+RLILV+S
Sbjct: 72  VRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVES 120

[Close]

BLAST of MELO3C027814 vs. ExPASy Swiss-Prot
Match: P62300 (40S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-16
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           V +L +KG+APEIPEDLYHLIKKAV+IRKHLERNRKDKDSK+RLILV+S
Sbjct: 72  VRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVES 120

[Close]

BLAST of MELO3C027814 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-16
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5   LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of MELO3C027814 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-16
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5   LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of MELO3C027814 vs. ExPASy TrEMBL
Match: A8UAD8 (40S ribosomal protein S13 OS=Barentsia elongata OX=478378 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 5   LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +L +KGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of MELO3C027814 vs. ExPASy TrEMBL
Match: A0A5A7TK12 (40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00500 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   MCVFLLL--SKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +C+ ++L  S GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 62  VCIGVILRDSHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 114

[Close]

BLAST of MELO3C027814 vs. ExPASy TrEMBL
Match: A0A5A7U9F0 (Putative ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001980 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MCVFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLI 48
          MCVFLLLSKGLAPEIPEDLYHLIKK VSIRKHLERNRKDKDSK + +
Sbjct: 1  MCVFLLLSKGLAPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKAKFV 47

[Close]

BLAST of MELO3C027814 vs. ExPASy TrEMBL
Match: A0A0N4V0I2 (40S ribosomal protein S13 OS=Enterobius vermicularis OX=51028 GN=EVEC_LOCUS3134 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.4e-14
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           V +L SKG+APEIPEDLYHLIKKAVSIRKHLERNRKDKDSK+RLILV+S
Sbjct: 72  VRILKSKGMAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKYRLILVES 120

[Close]

BLAST of MELO3C027814 vs. ExPASy TrEMBL
Match: A0A0N5AK96 (40S ribosomal protein S13 OS=Syphacia muris OX=451379 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.4e-14
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           V +L SKG+APEIPEDLYHLIKKAVSIRKHLERNRKDKDSK+RLILV+S
Sbjct: 72  VRILKSKGMAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKYRLILVES 120

[Close]

BLAST of MELO3C027814 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-17
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5   LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of MELO3C027814 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-17
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5   LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

The following BLAST results are available for this feature:

BLAST of MELO3C027814 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043612.1	2.9e-14	84.91	40S ribosomal protein S13 [Cucumis melo var. makuwa]	[more]
ABW90418.1	2.9e-14	91.49	putative ribosomal protein S13 [Barentsia elongata]	[more]
KAA0051790.1	3.8e-14	89.36	putative ribosomal protein S13 [Cucumis melo var. makuwa]	[more]
KAA0049888.1	5.0e-14	91.49	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]
TYK07625.1	5.0e-14	91.49	40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK14810.1 40S riboso...	[more]

BLAST of MELO3C027814 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	1.9e-16	89.36	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P62299	3.2e-16	83.67	40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2	[more]
P62300	3.2e-16	83.67	40S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2	[more]
P59223	4.2e-16	87.23	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
P59224	4.2e-16	87.23	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]

BLAST of MELO3C027814 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A8UAD8	1.4e-14	91.49	40S ribosomal protein S13 OS=Barentsia elongata OX=478378 PE=2 SV=1	[more]
A0A5A7TK12	1.4e-14	84.91	40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5A7U9F0	1.8e-14	89.36	Putative ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0N4V0I2	2.4e-14	87.76	40S ribosomal protein S13 OS=Enterobius vermicularis OX=51028 GN=EVEC_LOCUS3134 ...	[more]
A0A0N5AK96	2.4e-14	87.76	40S ribosomal protein S13 OS=Syphacia muris OX=451379 PE=3 SV=1	[more]

BLAST of MELO3C027814 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60770.1	3.0e-17	87.23	Ribosomal protein S13/S15	[more]
AT4G00100.1	3.0e-17	87.23	ribosomal protein S13A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 14..49 e-value: 1.4E-7 score: 31.6
None	No IPR available	GENE3D	1.10.287.10		coord: 13..51 e-value: 3.8E-21 score: 77.1
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 5..51
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 5..51
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 8..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027814.1	MELO3C027814.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome