MELO3C027810 (gene) Melon (DHL92) v4

Overview
NameMELO3C027810
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCACTA en-spm transposon protein
Locationchr12: 19592604 .. 19592734 (-)
RNA-Seq ExpressionMELO3C027810
SyntenyMELO3C027810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCGTCGGGAAAAATGGTTTTCCCGACGCCGCTCCCGACGCACTGTTCACGGCGTCGGGAAAAACCCCTTTTCCCGATGTATTTTTGCCGACGCCTTCATGGTGCGTCGGGAAAGATGGTTTTCCCGACGC

mRNA sequence

TGCGTCGGGAAAAATGGTTTTCCCGACGCCGCTCCCGACGCACTGTTCACGGCGTCGGGAAAAACCCCTTTTCCCGATGTATTTTTGCCGACGCCTTCATGGTGCGTCGGGAAAGATGGTTTTCCCGACGC

Coding sequence (CDS)

ATGGTTTTCCCGACGCCGCTCCCGACGCACTGTTCACGGCGTCGGGAAAAACCCCTTTTCCCGATGTATTTTTGCCGACGCCTTCATGGTGCGTCGGGAAAGATGGTTTTCCCGACG

Protein sequence

MVFPTPLPTHCSRRREKPLFPMYFCRRLHGASGKMVFPT
Homology
[Close]
BLAST of MELO3C027810 vs. NCBI nr
Match: TYK18170.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 7.2e-05
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 2  VFPTPLPTHCSRRREKPLFPMYFCRRLHGASGKMVFP 39
          +FPTPLPTHCSRRREKPLFP+YF        GK  FP
Sbjct: 27 LFPTPLPTHCSRRREKPLFPIYFLPTPSCCVGKKGFP 63

[Close]
BLAST of MELO3C027810 vs. NCBI nr
Match: KAA0025990.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 7.2e-05
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 2  VFPTPLPTHCSRRREKPLFPMYFCRRLHGASGKMVFP 39
          +FPTPLPTHCSRRREKPLFP+YF        GK  FP
Sbjct: 27 LFPTPLPTHCSRRREKPLFPIYFLPTPSCCVGKKGFP 63

[Close]
BLAST of MELO3C027810 vs. ExPASy TrEMBL
Match: A0A5D3D337 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001020 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.5e-05
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 2  VFPTPLPTHCSRRREKPLFPMYFCRRLHGASGKMVFP 39
          +FPTPLPTHCSRRREKPLFP+YF        GK  FP
Sbjct: 27 LFPTPLPTHCSRRREKPLFPIYFLPTPSCCVGKKGFP 63

[Close]
BLAST of MELO3C027810 vs. ExPASy TrEMBL
Match: A0A5A7SII7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003110 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.5e-05
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 2  VFPTPLPTHCSRRREKPLFPMYFCRRLHGASGKMVFP 39
          +FPTPLPTHCSRRREKPLFP+YF        GK  FP
Sbjct: 27 LFPTPLPTHCSRRREKPLFPIYFLPTPSCCVGKKGFP 63

The following BLAST results are available for this feature:
BLAST of MELO3C027810 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C027810 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK18170.17.2e-0567.57protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa][more]
KAA0025990.17.2e-0567.57CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C027810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D3373.5e-0567.57Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SII73.5e-0567.57CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
BLAST of MELO3C027810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027810.1MELO3C027810.1mRNA