MELO3C027705 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027705
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr10: 20851565 .. 20852907 (+)
RNA-Seq Expression	MELO3C027705
Synteny	MELO3C027705

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAGCTCTAGAAGAACAACACAAAGAGGATAACACACATCCCGCATGAAACTAGGCATAGGATTAGACAGTTAGCTTATTTTCGCATGATTCATGGCTCAGACCTTGTGTGTCACCAAAGTACGAGAATGGACCAAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAATGTCGATGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCACACGACGTGAAAAATCGTGTCATTCAACGAGAGTTCATTCGGTCATTCAACGAGATGGTAGCAATGTACTTGGCATGTGTGACACGAAAGGAGATTTCGTTTACATACTTGCCGGTTGGGAAGGATCAGCTGTGGACTCACGCATCCTCCGTGATGCCCTTTTAAGACCTAATGGCCTGAAGGTGCCCAAGGGTAACTAACAACGGCATTGTACCTATGAATGCAATTTTGCAATTAACAACTGCGACATTTTAATCGTGCATTGTTATCACAGGCTATTACTAACTGGTTGATGCCGGGTACCCAAATGCAGAGGGTTTCCTGGCACCATACAGAGGCCAGCGCTACCACTTGCAAGAATGATGTGGTGCTGAAAATACATTTTCAACATCGAAAGAGTTCTTCAATATGAAGCATTCGTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGAGCGATACTGCAGGGAAAGTCATACTACCCTGTAGAAGTTCAATGTCGCACAATACTCGCATGTTGTCTCCTCCACAACCTTATCAATAGAGAGATGACAAACTTTGATATAAAAGACAACATAGATGAGGTTGATTCCACCCACGTGACTACTACTGCCGATGACATACATTACATAGAGACGTCCAATGAGTGGAGTCAATGGAGAGACGACCTTGCAGAAGAAATGTTTACTGATTGGGAGTTGTGTAACCAGTAGAAAAATTAAATGTTCCTCGTTCATTTTCATACTTAAGTAGTGATTGCACTGAGTCTTATTTTGTCATAGTTTTTGGAATATAATTATTTTGAATGTATTGGTTACGCAAGTAAATTACTGCCAAACTGTTTTTCAGTAGGAGTTGACTGTACTATGAAACTAATCGTATGTATGTTATCTAATCATAGGGAAATTAATGAGACCAATATATTTGCGTTTGACTTCTAGCATGACAAGTTCATCGAGACTACCTAAACACAATTGAACTAAAGAGGAAGAGGCAGGCTTCGTCGAGTGCCTCGTGGAGTTGGTCAACGCTGATGGGTGGAGGTCCGACAACGAGACCTTTTGCCTCAGGTACTTAA

mRNA sequence

ATGTTGGAGCTCTAGAAGAACAACACAAAGAGGATAACACACATCCCGCATGAAACTAGGCATAGGATTAGACAGTTAGCTTATTTTCGCATGATTCATGGCTCAGACCTTGTGTGTCACCAAAGTACGAGAATGGACCAAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAATGTCGATGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTACTTGGCATGTGTGACACGAAAGGAGATTTCGTTTACATACTTGCCGGTTGGGAAGGATCAGCTGTGGACTCACGCATCCTCCGTGATGCCCTTTTAAGACCTAATGGCCTGAAGGTGCCCAAGGGTAACTAACAACGGCATTGTACCTATGAATGCAATTTTGCAATTAACAACTGCGACATTTTAATCGTGCATTGTTATCACAGAATTGAACTAAAGAGGAAGAGGCAGGCTTCGTCGAGTGCCTCGTGGAGTTGGTCAACGCTGATGGGTGGAGGTCCGACAACGAGACCTTTTGCCTCAGGTACTTAA

Coding sequence (CDS)

ATGATTCATGGCTCAGACCTTGTGTGTCACCAAAGTACGAGAATGGACCAAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAATGTCGATGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTACTTGGCATGTGTGACACGAAAGGAGATTTCGTTTACATACTTGCCGGTTGGGAAGGATCAGCTGTGGACTCACGCATCCTCCGTGATGCCCTTTTAA

Protein sequence

MIHGSDLVCHQSTRMDQRCFAILCHLLRTIAGLMSMEVVDVEEMVAMYLACVTRKEISFTYLPVGKDQLWTHASSVMPF

Homology

[Close]

BLAST of MELO3C027705 vs. NCBI nr
Match: KAA0041022.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK20381.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 3.8e-21
Identity = 61/91 (67.03%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 15 MDQRCFAILCHLLRTIAGLMSMEVVDVE----------------------------EMVA 74
          MDQRCFAILCHLLRTIAGLMSMEVVDVE                            EMVA
Sbjct: 1  MDQRCFAILCHLLRTIAGLMSMEVVDVEEMVAMFLHILAHDVKNRVIQREFIRSFNEMVA 60

Query: 75 MYLACVTRKEISFTYLPVGKDQLWTHASSVM 78
          MYLACVTRKEISFTYLPVGKDQLWTHASS +
Sbjct: 61 MYLACVTRKEISFTYLPVGKDQLWTHASSAI 91

[Close]

BLAST of MELO3C027705 vs. NCBI nr
Match: KAA0051057.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 8.2e-16
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1   MIHGSDLVCHQSTRMDQRCFAILCHLLRTIAGLMSMEVVDVEEMVAMYL 50
           MIHGSDLVCHQSTRMD+RCFAILCHLLRTIAGL S EVVDVEEMVAM+L
Sbjct: 53  MIHGSDLVCHQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL 101

[Close]

BLAST of MELO3C027705 vs. NCBI nr
Match: KAA0054690.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-15
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MIHGSDLVCHQSTRMDQRCFAILCHLLRTIAGLMSMEVVDVEEMVAMYL 50
          MIHGSDLVCHQSTRMD+RCFAILCHLLRTIAGL S EVVDV+EMVAM+L
Sbjct: 31 MIHGSDLVCHQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVKEMVAMFL 79

[Close]

BLAST of MELO3C027705 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 7.0e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1   MIHGSDLVCHQSTRMDQRCFAILCHLLRTIAGLMSMEVVDVEEMVAMYL 50
           MIHGSDLVC QSTRMD+RCFAILCHLLRTIAGL S EVVDVEEMVAM+L
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL 101

[Close]

BLAST of MELO3C027705 vs. NCBI nr
Match: KAA0063728.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 7.0e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1  MIHGSDLVCHQSTRMDQRCFAILCHLLRTIAGLMSMEVVDVEEMVAMYL 50
          MIHGSDLVCHQSTRMD+RCFAILCHLLRTIA L S EVVDVEEMVAM+L
Sbjct: 31 MIHGSDLVCHQSTRMDRRCFAILCHLLRTIARLTSTEVVDVEEMVAMFL 79

[Close]

BLAST of MELO3C027705 vs. ExPASy TrEMBL
Match: A0A5A7TC28 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold228G00860 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21
Identity = 61/91 (67.03%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 15 MDQRCFAILCHLLRTIAGLMSMEVVDVE----------------------------EMVA 74
          MDQRCFAILCHLLRTIAGLMSMEVVDVE                            EMVA
Sbjct: 1  MDQRCFAILCHLLRTIAGLMSMEVVDVEEMVAMFLHILAHDVKNRVIQREFIRSFNEMVA 60

Query: 75 MYLACVTRKEISFTYLPVGKDQLWTHASSVM 78
          MYLACVTRKEISFTYLPVGKDQLWTHASS +
Sbjct: 61 MYLACVTRKEISFTYLPVGKDQLWTHASSAI 91

[Close]

BLAST of MELO3C027705 vs. ExPASy TrEMBL
Match: A0A5A7U9H2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00110 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.0e-16
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1   MIHGSDLVCHQSTRMDQRCFAILCHLLRTIAGLMSMEVVDVEEMVAMYL 50
           MIHGSDLVCHQSTRMD+RCFAILCHLLRTIAGL S EVVDVEEMVAM+L
Sbjct: 53  MIHGSDLVCHQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL 101

[Close]

BLAST of MELO3C027705 vs. ExPASy TrEMBL
Match: A0A5A7UHD9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G005150 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-15
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MIHGSDLVCHQSTRMDQRCFAILCHLLRTIAGLMSMEVVDVEEMVAMYL 50
          MIHGSDLVCHQSTRMD+RCFAILCHLLRTIAGL S EVVDV+EMVAM+L
Sbjct: 31 MIHGSDLVCHQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVKEMVAMFL 79

[Close]

BLAST of MELO3C027705 vs. ExPASy TrEMBL
Match: A0A5D3CKE3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001650 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.4e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1  MIHGSDLVCHQSTRMDQRCFAILCHLLRTIAGLMSMEVVDVEEMVAMYL 50
          MIHGSDLVC QSTRMD+RCFAILCHLLRTIAGL S EVVDVEEMVAM+L
Sbjct: 31 MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL 79

[Close]

BLAST of MELO3C027705 vs. ExPASy TrEMBL
Match: A0A5A7T5Y5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001490 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.4e-15
Identity = 45/49 (91.84%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 1   MIHGSDLVCHQSTRMDQRCFAILCHLLRTIAGLMSMEVVDVEEMVAMYL 50
           MIHGSDLVC QSTRMDQRCFAILCHLLRTIA L S EVVDVEEMVAMYL
Sbjct: 53  MIHGSDLVCRQSTRMDQRCFAILCHLLRTIAELTSTEVVDVEEMVAMYL 101

The following BLAST results are available for this feature:

BLAST of MELO3C027705 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041022.1	3.8e-21	67.03	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK20381.1 putative nucleas...	[more]
KAA0051057.1	8.2e-16	91.84	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054690.1	2.4e-15	89.80	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065286.1	7.0e-15	89.80	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063728.1	7.0e-15	89.80	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C027705 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C027705 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TC28	1.8e-21	67.03	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U9H2	4.0e-16	91.84	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UHD9	1.2e-15	89.80	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CKE3	3.4e-15	89.80	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T5Y5	3.4e-15	91.84	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C027705 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027705.1	MELO3C027705.1	mRNA