MELO3C027680.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C027680.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr08: 15873288 .. 15875431 (-)
RNA-Seq ExpressionMELO3C027680.jh1
SyntenyMELO3C027680.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCCTTGATGGGCAAAAAACACCAAAGTCTTCTTTCTTTATGGTCAATACCATCAAGAAATAGTTTTTTATGGCATGTTTTCGCCATCAAGAAATGATTTTCTTCACAGACTTTTCAATTTCCTTGATAGGCAAAAAACATCGAAGTTTCATTTCTTGATGGCCAATACCATCAAGAAAGAACTTTTGATGACATGTTTTAAACTAGTTTTTTTTATGGTCGAGCTTTCTTGATGTCTGCCTACATGATGGGCAAAGACCATCAAGGTAGATATTTTTTGACGTGCTTTGCACATCGAAGAAGGCCAAATATGTAGTAGTGACCTTGGTGGTGTGCACCTTGGTAGGAAAGGCTTAGTGGAACTCTCTTGGTACTGGTACTTCAACCCTCCCACTAGTTACTGCCCCTTTCCCTTCTTTACCTCTTCAGATGCTTCCTAAGGATACCCATTTTCTCATCCACCCCCTAATGTTGCTTCTTGAAGTGGGGTACATAAAAGTGTGAAGCCTTTCTTTCCTTAGCTCAATTCTATAATATTTTACTCTTTGGCTCACCGAGTTAGGCTATACTAACCTGGGTATTACTCTCGCCTTCCTCAGAACTAGGCCATCCAGACTAAGAAGCAATCCACTTACCAACCTACTTCTTAGGATATTAGAAACTTCCATGACTAATGCGCCATGTAAGGCTACTGAGTAACTCTACCTTCTCTCCTTAACTAAGCTACAACGCCTAAAATCCATCATTCGCTTGGCTTCAACACCTAACAACTTGGGAAGGAAAAACTTAAAACATAAGTCAAATGGACATAGTGAGTGAAGGGGTTGAGAAAACCTTTTCTGAAAATAATCTCAAGAAATCCATGAAAAAATAAATGATAAGTCATAACACATGAAGTTTAAGGCAACGAATTGTTAATACAAATCCCGTAACCATCACAACTCAAATAATTACTCAACGGGTCACTAATTGTGCCATCATCACCAATATAAGATAATTTGGAGACCTAGGAGTCTCCCTTTGCTGACTTGGGATTCGATCTCACCAGTATCACGCAAGTTACCTGGACTATCCAACAATGTCTCACCATATTCACATTCTTAGAGTTGGGAGTTACACTCTACCAGCATCTCATCAACATCGTTCCTACAACGAGTGCTACAATGCTATACGTTGGAATCAGTTTGCGACAAGTCCATTATGAGAATTAGGAACCTCCTCTAGTCTGGACCTGGAATTCACACTCAACCAGCATCATGCAAATTTTCTGGGATTTCCACCAACGTCTTGTGATAGATTTCATCTTCTCCCAATAAACAACCATTAGAAACAGTAAAAAGAAGGATTAGCTCTCAGTTTACAGTCCTTACACATTATTTACGTAGTGACAGTTTCATACAACAAGAATCACGAAAGAATACTTTTAAATGATTATCAACAAAATACCTGTTCAACATATTAGAACACAATCATAGTATTATCTGTTTATGAAGGTCACTTGTAAAGTCTTACTTCCATTGATGAAAGATTCACAATTATTCTACTTATAAGAGATACTAAAAAATAAATATTGTTAAAAAGATACTCTTATGTCTATGACGAACTACTCACAATATTTATTCATAACTCATAAACAAATACAGTAAAGAATCAACAATAAATAATAGATTAATAATCATATCGAATGGTTTTTCATCATTTAAAAATATACTCTAGCCACAACCACTTCCTTTTTTATCGTTGGATTCCTCTTCTCACCTAGCGGTTCCTTCCTATGCCGTTTAGTATCTGAACTTTCCTTTTTAGTTATATTAGAAAGTTTAACTTTTTCGAAACTCCCTTTTTTCCTCTTTGGCCTTTGGCCCCATTTATAGTGACCTCCCACATCCAAGGATCATTTCAACACTTTACACATATCTTATTAATGACTTTTCGTGTTATGTAGTTAACCCAAATTCGACACGTGGTCTATTCGTCAACGACGATTGAACTTTTTCCTCTGGATGAACACCTTATCTCTTTGGAAAGTCAAACTCTTAAATCGCCTGACCCTCCTATCTTATCGAGAAACAATAGACATTTACTTCCTCTCAACGAGTGGTCAAGTATTCTTGACAAGAAACTTCCTCGCCTCCTTCCTTAG

mRNA sequence

TTTCCTTGATGGGCAAAAAACACCAAAGTCTTCTTTCTTTATGGAGTCTCCCTTTGCTGACTTGGGATTCGATCTCACCAGTATCACGCAAGTTACCTGGACTATCCAACAATGTCTCACCATATTCACATTCTTAGAGTTGGGAGTTACACTCTACCAGCATCTCATCAACATCGTTCCTACAACGAGTGCTACAATGCTATACGTTGGAATCAGTTTGCGACAATTAACCCAAATTCGACACGTGGTCTATTCGTCAACGACGATTGAACTTTTTCCTCTGGATGAACACCTTATCTCTTTGGAAAGTCAAACTCTTAAATCGCCTGACCCTCCTATCTTATCGAGAAACAATAGACATTTACTTCCTCTCAACGAGTGGTCAAGTATTCTTGACAAGAAACTTCCTCGCCTCCTTCCTTAG

Coding sequence (CDS)

ATGGAGTCTCCCTTTGCTGACTTGGGATTCGATCTCACCAGTATCACGCAAGTTACCTGGACTATCCAACAATGTCTCACCATATTCACATTCTTAGAGTTGGGAGTTACACTCTACCAGCATCTCATCAACATCGTTCCTACAACGAGTGCTACAATGCTATACGTTGGAATCAGTTTGCGACAATTAACCCAAATTCGACACGTGGTCTATTCGTCAACGACGATTGAACTTTTTCCTCTGGATGAACACCTTATCTCTTTGGAAAGTCAAACTCTTAAATCGCCTGACCCTCCTATCTTATCGAGAAACAATAGACATTTACTTCCTCTCAACGAGTGGTCAAGTATTCTTGACAAGAAACTTCCTCGCCTCCTTCCTTAG

Protein sequence

MESPFADLGFDLTSITQVTWTIQQCLTIFTFLELGVTLYQHLINIVPTTSATMLYVGISLRQLTQIRHVVYSSTTIELFPLDEHLISLESQTLKSPDPPILSRNNRHLLPLNEWSSILDKKLPRLLP
Homology
[Close]
BLAST of MELO3C027680.jh1 vs. NCBI nr
Match: KAA0062984.1 (hypothetical protein E6C27_scaffold468G00840 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 7.12e-09
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 9   GFDLTSITQVTWTIQQCLTIFTFLELGVTLYQHLINIVPTTSATMLYVGISLRQL 63
           GFDL SITQV W IQQ L  FTFL+LGVTL+Q LI I  TTS+   Y GI  +Q+
Sbjct: 166 GFDLASITQVPWDIQQRLATFTFLDLGVTLHQRLIKIFLTTSSITPYAGIISQQI 220

[Close]
BLAST of MELO3C027680.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V6Y4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00840 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.45e-09
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 9   GFDLTSITQVTWTIQQCLTIFTFLELGVTLYQHLINIVPTTSATMLYVGISLRQL 63
           GFDL SITQV W IQQ L  FTFL+LGVTL+Q LI I  TTS+   Y GI  +Q+
Sbjct: 166 GFDLASITQVPWDIQQRLATFTFLDLGVTLHQRLIKIFLTTSSITPYAGIISQQI 220

The following BLAST results are available for this feature:
BLAST of MELO3C027680.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062984.17.12e-0961.82hypothetical protein E6C27_scaffold468G00840 [Cucumis melo var. makuwa][more]
BLAST of MELO3C027680.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C027680.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V6Y43.45e-0961.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C027680.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027680.jh1.t1MELO3C027680.jh1.t1mRNA