MELO3C027670 (gene) Melon (DHL92) v4

Overview
NameMELO3C027670
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase domain-containing protein
Locationchr01: 21866101 .. 21867060 (-)
RNA-Seq ExpressionMELO3C027670
SyntenyMELO3C027670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCATGTGACTTCACGGAGCTTTCCATTGATTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACGGGTTATATTTCTGTTGTCGACGTTGAGTGTACTCTGTGACAACGATGCTTTCGTGAGTGCTAGGCGGGCCCCACTATGACAAAGACGATGAGAGTGTCGGGGGGGCCCCACTACATCGTAGGACTAGTAAACGTTTGTTGTATTGGGCGTGTCCTACACCAGTAGATCGGTCATGTTAGTTAAAACGTTTAATGTACTTGTCATGCTTTGTTAGATTTTTTTTATGATGAACTTGGAAAATATTTTAGAAAGCTTTATTTATTACACGTTTATGTTAAATGCTTTGTTTGAACATATTTATACATCTAAAGGTTTATCACATGTTTCGACGTCCGTATTTAGAGTTTTAAATTTAGTCACTCACTGGGCCTTGTAGCTCATTCTTTTCAAAATGTTTCCCACTTTTCAGGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCGAATCAAACTCCAGTACGTGGTTGGAGTTGTATTTTGAGTTTTTTCATATTGAAATGTTTTGTAAGGTTTAAATAATATCGTCCTGGAGGTCGTAGTCATAAAACTCTAGTTGTATAGGTTTTGGTCCTGATGTTTATATCAGGTTATTTTACAAACCAAGTGATGTCAGGGCTGCATCTTATGTATGTTGGGAAGGTTTTCATGGTTTCCTCTGTGTGGTGTTCCATGTTGAATATTCTATATCTAAGATTGGTATGTTTATCGGGCTTAACGTTCAGTAGGGTCAGCAGGGATCGTTAGAGGAGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGACAGTAGGTGTTCGGGGAGGGGTGTGACATGAAATATGCTTTGAACCTTTGTTTTGGATTTGGATAG

mRNA sequence

ATGTTTTCATGTGACTTCACGGAGCTTTCCATTGATTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACGGGTTATATTTCTGTTGTCGACGTTGAGTGTACTCTGTGACAACGATGCTTTCGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCGAATCAAACTCCAGTACGTGGTTGGAGTTGTTATTTTACAAACCAAGTGATGTCAGGGCTGCATCTTATGGTCAGCAGGGATCGTTAGAGGAGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGACAGTAGGTGTTCGGGGAGGGGTGTGACATGAAATATGCTTTGAACCTTTGTTTTGGATTTGGATAG

Coding sequence (CDS)

ATGTTTTCATGTGACTTCACGGAGCTTTCCATTGATTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACGGGTTATATTTCTGTTGTCGACGTTGAGTGTACTCTGTGACAACGATGCTTTCGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCGAATCAAACTCCAGTACGTGGTTGGAGTTGTTATTTTACAAACCAAGTGATGTCAGGGCTGCATCTTATGGTCAGCAGGGATCGTTAGAGGAGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGACAGTAG

Protein sequence

MFSCDFTELSIDYMTEILSLRLYGTVCTRVIFLLSTLSVLCDNDAFVEIELPVPDTLPTSAESSESNSSTWLELLFYKPSDVRAASYGQQGSLEETMSVGFTPSFGLRQ
Homology
[Close]
BLAST of MELO3C027670 vs. NCBI nr
Match: KAA0041121.1 (hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 90/143 (62.94%), Postives = 91/143 (63.64%), Query Frame = 0 

Query: 9   LSIDYMTEILSLRLYGTVCTRVIFLLSTLSVLCDNDAFVEIELPVPDTLPTSAESSESNS 68
           +SIDYMTEILSLRLYGTVCT VIF LSTLSVL DND  VEIELPVPD LPTSAESS SNS
Sbjct: 91  ISIDYMTEILSLRLYGTVCTHVIFQLSTLSVLRDNDVVVEIELPVPDRLPTSAESSASNS 150

Query: 69  STWLEL---------LFYKPSDVRAAS--------------------------------- 110
           STWLEL         LFYKPSDVR  S                                 
Sbjct: 151 STWLELYFESVHVEMLFYKPSDVRIVSRVCWEGFRGFLCVVFHVEYSISKIGMFIGFNVQ 210

[Close]
BLAST of MELO3C027670 vs. NCBI nr
Match: TYK27997.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 9.0e-29
Identity = 81/116 (69.83%), Postives = 86/116 (74.14%), Query Frame = 0 

Query: 9   LSIDYMTEILSLRLYGTVCTRVIFLLSTLSVLCDNDAFVEIELPVPDTLPTSAESSESNS 68
           LSIDYMTEILSLR YGTVCT+VIF LSTLSVL DNDA VEIELPVPDTLP+S ES ESNS
Sbjct: 204 LSIDYMTEILSLRPYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPSSTESFESNS 263

Query: 69  STWLELLF---------YKPSDVRAASY------GQQGSLEETMSVGFTPSFGLRQ 110
           STWLEL F         Y  + V +  +       QQGSLEETMSVGFT SFGLRQ
Sbjct: 264 STWLELYFEFVHVEMFCYFTNQVMSGLHLMYVGKDQQGSLEETMSVGFTSSFGLRQ 319

[Close]
BLAST of MELO3C027670 vs. NCBI nr
Match: KAA0066850.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 9.0e-29
Identity = 81/116 (69.83%), Postives = 86/116 (74.14%), Query Frame = 0 

Query: 9   LSIDYMTEILSLRLYGTVCTRVIFLLSTLSVLCDNDAFVEIELPVPDTLPTSAESSESNS 68
           LSIDYMTEILSLR YGTVCT+VIF LSTLSVL DNDA VEIELPVPDTLP+S ES ESNS
Sbjct: 218 LSIDYMTEILSLRPYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPSSTESFESNS 277

Query: 69  STWLELLF---------YKPSDVRAASY------GQQGSLEETMSVGFTPSFGLRQ 110
           STWLEL F         Y  + V +  +       QQGSLEETMSVGFT SFGLRQ
Sbjct: 278 STWLELYFEFVHVEMFCYFTNQVMSGLHLMYVGKDQQGSLEETMSVGFTSSFGLRQ 333

[Close]
BLAST of MELO3C027670 vs. NCBI nr
Match: TYK21916.1 (hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.9e-27
Identity = 78/107 (72.90%), Postives = 81/107 (75.70%), Query Frame = 0 

Query: 9   LSIDYMTEILSLRLYGTVCTRVIFLLSTLSVLCDNDAFVEIELPVPDTLPTSAESSESNS 68
           +SIDYMTEILSLRLYGTVCT VIF LSTLSVL DNDA VEIELPVPD LPTSAESS SNS
Sbjct: 91  ISIDYMTEILSLRLYGTVCTHVIFSLSTLSVLRDNDAVVEIELPVPDRLPTSAESSASNS 150

Query: 69  STWLELLFYKPSDVRAASY------GQQGSLEETMSVGFTPSFGLRQ 110
           S       Y  + V +  Y      GQQGSLEETMSV FTPSFGLRQ
Sbjct: 151 S-------YFTNQVMSGLYLVYVGKGQQGSLEETMSVSFTPSFGLRQ 190

[Close]
BLAST of MELO3C027670 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 6.0e-25
Identity = 71/88 (80.68%), Postives = 73/88 (82.95%), Query Frame = 0 

Query: 9    LSIDYMTEILSLRLYGTVCTRVIFLLSTLSVLCDNDAFVEIELPVPDTLPTSAESSESNS 68
            LSIDYMTEILSLRL GTVCT+VIF LSTLSVL DN+A VEIELPVPDTLPTSAE  ESNS
Sbjct: 1281 LSIDYMTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNS 1340

Query: 69   STWLEL---------LFYKPSDVRAASY 88
            STWLEL         LFYKPSDVRAASY
Sbjct: 1341 STWLELYLESVHVEMLFYKPSDVRAASY 1368

[Close]
BLAST of MELO3C027670 vs. ExPASy TrEMBL
Match: A0A5A7THH5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00290 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32
Identity = 90/143 (62.94%), Postives = 91/143 (63.64%), Query Frame = 0 

Query: 9   LSIDYMTEILSLRLYGTVCTRVIFLLSTLSVLCDNDAFVEIELPVPDTLPTSAESSESNS 68
           +SIDYMTEILSLRLYGTVCT VIF LSTLSVL DND  VEIELPVPD LPTSAESS SNS
Sbjct: 91  ISIDYMTEILSLRLYGTVCTHVIFQLSTLSVLRDNDVVVEIELPVPDRLPTSAESSASNS 150

Query: 69  STWLEL---------LFYKPSDVRAAS--------------------------------- 110
           STWLEL         LFYKPSDVR  S                                 
Sbjct: 151 STWLELYFESVHVEMLFYKPSDVRIVSRVCWEGFRGFLCVVFHVEYSISKIGMFIGFNVQ 210

[Close]
BLAST of MELO3C027670 vs. ExPASy TrEMBL
Match: A0A5A7VI26 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002210 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.3e-29
Identity = 81/116 (69.83%), Postives = 86/116 (74.14%), Query Frame = 0 

Query: 9   LSIDYMTEILSLRLYGTVCTRVIFLLSTLSVLCDNDAFVEIELPVPDTLPTSAESSESNS 68
           LSIDYMTEILSLR YGTVCT+VIF LSTLSVL DNDA VEIELPVPDTLP+S ES ESNS
Sbjct: 218 LSIDYMTEILSLRPYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPSSTESFESNS 277

Query: 69  STWLELLF---------YKPSDVRAASY------GQQGSLEETMSVGFTPSFGLRQ 110
           STWLEL F         Y  + V +  +       QQGSLEETMSVGFT SFGLRQ
Sbjct: 278 STWLELYFEFVHVEMFCYFTNQVMSGLHLMYVGKDQQGSLEETMSVGFTSSFGLRQ 333

[Close]
BLAST of MELO3C027670 vs. ExPASy TrEMBL
Match: A0A5D3DW05 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002130 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.3e-29
Identity = 81/116 (69.83%), Postives = 86/116 (74.14%), Query Frame = 0 

Query: 9   LSIDYMTEILSLRLYGTVCTRVIFLLSTLSVLCDNDAFVEIELPVPDTLPTSAESSESNS 68
           LSIDYMTEILSLR YGTVCT+VIF LSTLSVL DNDA VEIELPVPDTLP+S ES ESNS
Sbjct: 204 LSIDYMTEILSLRPYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPSSTESFESNS 263

Query: 69  STWLELLF---------YKPSDVRAASY------GQQGSLEETMSVGFTPSFGLRQ 110
           STWLEL F         Y  + V +  +       QQGSLEETMSVGFT SFGLRQ
Sbjct: 264 STWLELYFEFVHVEMFCYFTNQVMSGLHLMYVGKDQQGSLEETMSVGFTSSFGLRQ 319

[Close]
BLAST of MELO3C027670 vs. ExPASy TrEMBL
Match: A0A5D3DE96 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00570 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 78/107 (72.90%), Postives = 81/107 (75.70%), Query Frame = 0 

Query: 9   LSIDYMTEILSLRLYGTVCTRVIFLLSTLSVLCDNDAFVEIELPVPDTLPTSAESSESNS 68
           +SIDYMTEILSLRLYGTVCT VIF LSTLSVL DNDA VEIELPVPD LPTSAESS SNS
Sbjct: 91  ISIDYMTEILSLRLYGTVCTHVIFSLSTLSVLRDNDAVVEIELPVPDRLPTSAESSASNS 150

Query: 69  STWLELLFYKPSDVRAASY------GQQGSLEETMSVGFTPSFGLRQ 110
           S       Y  + V +  Y      GQQGSLEETMSV FTPSFGLRQ
Sbjct: 151 S-------YFTNQVMSGLYLVYVGKGQQGSLEETMSVSFTPSFGLRQ 190

[Close]
BLAST of MELO3C027670 vs. ExPASy TrEMBL
Match: A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.9e-25
Identity = 71/88 (80.68%), Postives = 73/88 (82.95%), Query Frame = 0 

Query: 9    LSIDYMTEILSLRLYGTVCTRVIFLLSTLSVLCDNDAFVEIELPVPDTLPTSAESSESNS 68
            LSIDYMTEILSLRL GTVCT+VIF LSTLSVL DN+A VEIELPVPDTLPTSAE  ESNS
Sbjct: 1281 LSIDYMTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNS 1340

Query: 69   STWLEL---------LFYKPSDVRAASY 88
            STWLEL         LFYKPSDVRAASY
Sbjct: 1341 STWLELYLESVHVEMLFYKPSDVRAASY 1368

The following BLAST results are available for this feature:
BLAST of MELO3C027670 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041121.13.0e-3262.94hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa][more]
TYK27997.19.0e-2969.83putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0066850.19.0e-2969.83putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK21916.12.9e-2772.90hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa][more]
TYK08952.16.0e-2580.68DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C027670 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C027670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7THH51.4e-3262.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VI264.3e-2969.83Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3DW054.3e-2969.83Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3DE961.4e-2772.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CCC72.9e-2580.68DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of MELO3C027670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027670.1MELO3C027670.1mRNA