MELO3C027666 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027666
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Ribosomal protein s12
Location	chr05: 21549546 .. 21549850 (-)
RNA-Seq Expression	MELO3C027666
Synteny	MELO3C027666

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGAGTTATATCCCTTCCCTTGCCCCCATCGAGAAATAGAACTGACTAATCCTAAGGCAAAGGGTCGAGAAACTCAACGCCACTATTCTTGA

mRNA sequence

gcataacttgtatccatgcgcttcatattcgcctggagttcgctcccagaaatatagccatccccaccccctcacgtcaatcccacgagcctcttatccattctcattcgatcacggcgggggagcaagtcaaaatagaaaaactcacattgggtttagggataatcaggctcgaactgatgacttccgccacgtcaaggcgacactctaccgctgagttatatcccttcccttgcccccatcgagaaatagaactgactaatcctaaggcaaagggtcgagaaactcaacgccactattcttga

Coding sequence (CDS)

ATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGAGTTATATCCCTTCCCTTGCCCCCATCGAGAAATAGAACTGACTAATCCTAAGGCAAAGGGTCGAGAAACTCAACGCCACTATTCTTGA

Protein sequence

ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSATSRRHSTAELYPFPCPHREIELTNPKAKGRETQRHYS

Homology

[Close]

BLAST of MELO3C027666 vs. NCBI nr
Match: KAF4359988.1 (hypothetical protein F8388_004495 [Cannabis sativa])

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-26
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 60
          ITCIHALHIRLEFAPRNIAIPTPSRQSH+PLIHSHSITAGEQVKIEKLTLGLGIIRLELM
Sbjct: 29 ITCIHALHIRLEFAPRNIAIPTPSRQSHKPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 88

Query: 61 TSATSR 67
          TS TSR
Sbjct: 89 TSTTSR 94

[Close]

BLAST of MELO3C027666 vs. NCBI nr
Match: ERM97518.1 (hypothetical protein AMTR_s05231p00006790, partial [Amborella trichopoda])

HSP 1 Score: 128.6 bits (322), Expect = 2.9e-26
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 60
          ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM
Sbjct: 13 ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 72

Query: 61 TSATS 66
          TS TS
Sbjct: 73 TSTTS 77

[Close]

BLAST of MELO3C027666 vs. NCBI nr
Match: KAG9438526.1 (hypothetical protein H6P81_021526 [Aristolochia fimbriata])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 65/79 (82.28%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1   ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 60
           ITCIHALHI LEFAP NIAIPT SRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM
Sbjct: 177 ITCIHALHISLEFAPSNIAIPTLSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 236

Query: 61  TSATSRRHSTAELYPFPCP 80
           TS TSR  S    +  P P
Sbjct: 237 TSTTSRLTSLLLSWYNPIP 255

[Close]

BLAST of MELO3C027666 vs. NCBI nr
Match: TYJ97094.1 (hypothetical protein E5676_scaffold23G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1   ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 60
           ITCIHA H+RL+FAPR+IAIPTPSRQSHEPLIHSHSI   EQVKIEKLTLGL IIRLELM
Sbjct: 115 ITCIHAFHVRLDFAPRDIAIPTPSRQSHEPLIHSHSIMTEEQVKIEKLTLGLEIIRLELM 174

Query: 61  TSAT 65
            SAT
Sbjct: 175 NSAT 178

[Close]

BLAST of MELO3C027666 vs. NCBI nr
Match: KAF4360038.1 (hypothetical protein G4B88_025799, partial [Cannabis sativa])

HSP 1 Score: 106.7 bits (265), Expect = 1.2e-19
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 13  FAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSATSRR 68
           FAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTS TSR+
Sbjct: 50  FAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSTTSRQ 104

[Close]

BLAST of MELO3C027666 vs. ExPASy TrEMBL
Match: A0A7J6ENJ8 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_004495 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.1e-26
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 60
          ITCIHALHIRLEFAPRNIAIPTPSRQSH+PLIHSHSITAGEQVKIEKLTLGLGIIRLELM
Sbjct: 29 ITCIHALHIRLEFAPRNIAIPTPSRQSHKPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 88

Query: 61 TSATSR 67
          TS TSR
Sbjct: 89 TSTTSR 94

[Close]

BLAST of MELO3C027666 vs. ExPASy TrEMBL
Match: U5CXB4 (Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s05231p00006790 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-26
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 60
          ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM
Sbjct: 13 ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 72

Query: 61 TSATS 66
          TS TS
Sbjct: 73 TSTTS 77

[Close]

BLAST of MELO3C027666 vs. ExPASy TrEMBL
Match: A0A6N2KRR2 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS86348 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-25
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1   ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITA-GEQVKIEKLTLGLGIIRLEL 60
           + CIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITA GEQVKIEKLTLGLGIIRLEL
Sbjct: 242 LACIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAEGEQVKIEKLTLGLGIIRLEL 301

Query: 61  MTSATSRRHSTA 72
           MTS TSR+  T+
Sbjct: 302 MTSTTSRQRFTS 313

[Close]

BLAST of MELO3C027666 vs. ExPASy TrEMBL
Match: A0A6N2K9N9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS53288 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-25
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1   ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITA-GEQVKIEKLTLGLGIIRLEL 60
           + CIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITA GEQVKIEKLTLGLGIIRLEL
Sbjct: 251 LACIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAEGEQVKIEKLTLGLGIIRLEL 310

Query: 61  MTSATSRRHSTA 72
           MTS TSR+  T+
Sbjct: 311 MTSTTSRQRFTS 322

[Close]

BLAST of MELO3C027666 vs. ExPASy TrEMBL
Match: A0A6N2LAQ4 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS200687 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-25
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1   ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITA-GEQVKIEKLTLGLGIIRLEL 60
           + CIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITA GEQVKIEKLTLGLGIIRLEL
Sbjct: 147 LACIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAEGEQVKIEKLTLGLGIIRLEL 206

Query: 61  MTSATSRRHSTA 72
           MTS TSR+  T+
Sbjct: 207 MTSTTSRQRFTS 218

The following BLAST results are available for this feature:

BLAST of MELO3C027666 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4359988.1	2.2e-26	96.97	hypothetical protein F8388_004495 [Cannabis sativa]	[more]
ERM97518.1	2.9e-26	98.46	hypothetical protein AMTR_s05231p00006790, partial [Amborella trichopoda]	[more]
KAG9438526.1	1.2e-24	82.28	hypothetical protein H6P81_021526 [Aristolochia fimbriata]	[more]
TYJ97094.1	3.7e-21	85.94	hypothetical protein E5676_scaffold23G00250 [Cucumis melo var. makuwa]	[more]
KAF4360038.1	1.2e-19	96.36	hypothetical protein G4B88_025799, partial [Cannabis sativa]	[more]

BLAST of MELO3C027666 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C027666 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6ENJ8	1.1e-26	96.97	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_004495 PE=4 SV=1	[more]
U5CXB4	1.4e-26	98.46	Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s052...	[more]
A0A6N2KRR2	1.2e-25	88.89	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS86348 PE=3 SV=1	[more]
A0A6N2K9N9	1.2e-25	88.89	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS53288 PE=3 SV=1	[more]
A0A6N2LAQ4	1.2e-25	88.89	Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS2006...	[more]

BLAST of MELO3C027666 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027666.1	MELO3C027666.1	mRNA