MELO3C027578 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027578
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Reverse transcriptase
Location	chr02: 5774617 .. 5775042 (+)
RNA-Seq Expression	MELO3C027578
Synteny	MELO3C027578

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGCCATCCGCACGTTTTCGTCGACCGCCCATTCCTGCATTCGGACACCGAATCGGCATCCAACCGTCTGCAGCCGACATCTCTCCCTCTCCTTTCGTCTCCGCCACCGTCGACGGTTCCTCTCTCCTCATTCCGTGTTCCCGACGTAGCTCAGAACACCGAGGGGAGCTACTCACTTCTGTCGTCGACGTCTCTCACTCGAACGTTGTCGGGTGGAGCAAAAATCCAGACCCGAGCCACGAATCCAGACCAAGACGAGCCGCGTGTTGAGCCAAGCCGCGAGCCGCGAGCCGCAAGCCGAGCCATGATTTGAGACGAGTCGAGGACCGAGCCAAGCCGAGCTGAGGACCGAGCCAAGCCGAGCCGAGGACCGAGCCGAGCCGAGCCGAGCCGAGGACCGAGCCGCGAGCTGGCCAACCCAAGCCA

mRNA sequence

ACGCCATCCGCACGTTTTCGTCGACCGCCCATTCCTGCATTCGGACACCGAATCGGCATCCAACCGTCTGCAGCCGACATCTCTCCCTCTCCTTTCGTCTCCGCCACCGTCGACGGTTCCTCTCTCCTCATTCCGTGTTCCCGACGTAGCTCAGAACACCGAGGGGAGCTACTCACTTCTGTCGTCGACGTCTCTCACTCGAACGTTGTCGGGTGGAGCAAAAATCCAGACCCGAGCCACGAATCCAGACCAAGACGAGCCGCGTGTTGAGCCAAGCCGCGAGCCGCGAGCCGAGCCGAGCCGAGCCGAGGACCGAGCCGCGAGCTGGCCAACCCAAGCCA

Coding sequence (CDS)

CGCCATCCGCACGTTTTCGTCGACCGCCCATTCCTGCATTCGGACACCGAATCGGCATCCAACCGTCTGCAGCCGACATCTCTCCCTCTCCTTTCGTCTCCGCCACCGTCGACGGTTCCTCTCTCCTCATTCCGTGTTCCCGACGTAGCTCAGAACACCGAGGGGAGCTACTCACTTCTGTCGTCGACGTCTCTCACTCGAACGTTGTCGGGTGGAGCAAAAATCCAGACCCGAGCCACGAATCCAGACCAAGACGAGCCGCGTGTTGAGCCAAGCCGCGAGCCGCGAGCCGAGCCGAGCCGAGCCGAGGACCGAGCCGCGAGCTGGCCAACCCAAGCC

Protein sequence

RHPHVFVDRPFLHSDTESASNRLQPTSLPLLSSPPPSTVPLSSFRVPDVAQNTEGSYSLLSSTSLTRTLSGGAKIQTRATNPDQDEPRVEPSREPRAEPSRAEDRAASWPTQA

Homology

[Close]

BLAST of MELO3C027578 vs. NCBI nr
Match: KAA0035574.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 55/70 (78.57%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 1    RHPHVFVDRPFLHSDTESASNRLQPTSLPLLSSPPPSTVPLSSFRVPDVAQNTEGSYSLL 60
            RHP  FV RPF H  TESASNRLQPTSLPL  SPP STV LSSF VPD AQNTEGS SL 
Sbjct: 1276 RHPRAFVVRPFPHPHTESASNRLQPTSLPLPLSPPQSTVLLSSFCVPDAAQNTEGSDSLP 1335

Query: 61   SSTSLTRTLS 71
             STSLTRTLS
Sbjct: 1336 PSTSLTRTLS 1345

[Close]

BLAST of MELO3C027578 vs. NCBI nr
Match: TYK30962.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 55/70 (78.57%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 1   RHPHVFVDRPFLHSDTESASNRLQPTSLPLLSSPPPSTVPLSSFRVPDVAQNTEGSYSLL 60
           RHP  FV RPF H  TESASNRLQPTSLPL  SPP STV LSSF VPD AQNTEGS SL 
Sbjct: 879 RHPRAFVVRPFPHPHTESASNRLQPTSLPLPLSPPQSTVLLSSFCVPDAAQNTEGSDSLP 938

Query: 61  SSTSLTRTLS 71
            STSLTRTLS
Sbjct: 939 PSTSLTRTLS 948

[Close]

BLAST of MELO3C027578 vs. NCBI nr
Match: KAA0035365.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-05
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 19   ASNRLQPTSLPLLSSPPPSTVPLSSFRVPDVAQNTEGSYSLLSSTSLTRTLSGGAKIQTR 78
            +S+RLQPT L   SSP P T+ LSS RV D  QNT+GS SL SSTSL + LS G KI+ R
Sbjct: 1488 SSDRLQPTPLSPSSSPSPPTISLSSSRVLDAGQNTQGSCSLPSSTSLIQPLSRGTKIRIR 1547

[Close]

BLAST of MELO3C027578 vs. ExPASy TrEMBL
Match: A0A5D3E4V0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001880 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.7e-17
Identity = 55/70 (78.57%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 1   RHPHVFVDRPFLHSDTESASNRLQPTSLPLLSSPPPSTVPLSSFRVPDVAQNTEGSYSLL 60
           RHP  FV RPF H  TESASNRLQPTSLPL  SPP STV LSSF VPD AQNTEGS SL 
Sbjct: 879 RHPRAFVVRPFPHPHTESASNRLQPTSLPLPLSPPQSTVLLSSFCVPDAAQNTEGSDSLP 938

Query: 61  SSTSLTRTLS 71
            STSLTRTLS
Sbjct: 939 PSTSLTRTLS 948

[Close]

BLAST of MELO3C027578 vs. ExPASy TrEMBL
Match: A0A5A7SW90 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G002460 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.7e-17
Identity = 55/70 (78.57%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 1    RHPHVFVDRPFLHSDTESASNRLQPTSLPLLSSPPPSTVPLSSFRVPDVAQNTEGSYSLL 60
            RHP  FV RPF H  TESASNRLQPTSLPL  SPP STV LSSF VPD AQNTEGS SL 
Sbjct: 1276 RHPRAFVVRPFPHPHTESASNRLQPTSLPLPLSPPQSTVLLSSFCVPDAAQNTEGSDSLP 1335

Query: 61   SSTSLTRTLS 71
             STSLTRTLS
Sbjct: 1336 PSTSLTRTLS 1345

[Close]

BLAST of MELO3C027578 vs. ExPASy TrEMBL
Match: A0A5A7T1P4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold597G00010 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 19   ASNRLQPTSLPLLSSPPPSTVPLSSFRVPDVAQNTEGSYSLLSSTSLTRTLSGGAKIQTR 78
            +S+RLQPT L   SSP P T+ LSS RV D  QNT+GS SL SSTSL + LS G KI+ R
Sbjct: 1488 SSDRLQPTPLSPSSSPSPPTISLSSSRVLDAGQNTQGSCSLPSSTSLIQPLSRGTKIRIR 1547

The following BLAST results are available for this feature:

BLAST of MELO3C027578 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035574.1	1.4e-16	78.57	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK30962.1	1.4e-16	78.57	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035365.1	2.5e-05	60.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C027578 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C027578 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E4V0	6.7e-17	78.57	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7SW90	6.7e-17	78.57	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28...	[more]
A0A5A7T1P4	1.2e-05	60.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold59...	[more]

BLAST of MELO3C027578 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027578.1	MELO3C027578.1	mRNA