MELO3C027564 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027564
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	U4/U6 small nuclear ribonucleoprotein Prp3
Location	chr10: 5637433 .. 5638158 (-)
RNA-Seq Expression	MELO3C027564
Synteny	MELO3C027564

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCAAGATTTTTTTTTTGATTATGTTATGCTAATTAAGTCACCAAAATGGATTTTGTAAGTTTAAGCTTTATGGTGATTGTATTCTGTTTTGAACAATTTATGTCCAAGTCAGGACATTTATTCATTCTTTGTTATATTAATCATCTTGGCAATTTTCTAGCCATTAGTTTTGAAGTGGGAGTGAGTTTGAGTGTTATTTGACATTTGTTGGATGTAAGAGCTGACATATTTTGTAATTTTGTAAACTGTTTGGTTTATAACGGCCTGTCTAGTTCAAGGTTCCTTATAGTGATTCGTACCTTCTTTGCATCTGTATTTTTAATCTGTATACATGGGTTAATTCTATAATATCGAGGAAACTCTTCCATGATTATGATGCCTTTGGGTAGTGGTAGACTGCTAGTAATGAACTAAAGTCATAATCATGCAGGGATCTATGGTGGAACCTACCGATATACCATCAGCAAGTGTGCCCCAGAATTTGTTACATCCTAGTCCTTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGATGCAGAAAGAATTAGCGGAGAAGTTGAAGAAAATTCCCCTGGTAAGTTAG

mRNA sequence

GCTCAAGATTTTTTTTTTGATTATGTTATGCTAATTAAGTCACCAAAATGGTATCTTCAATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGATGCAGAAAGAATTAGCGGAGAAGTTGAAGAAAATTCCCCTGGTAAGTTAG

Coding sequence (CDS)

ATGGTATCTTCAATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGATGCAGAAAGAATTAGCGGAGAAGTTGAAGAAAATTCCCCTGGTAAGTTAG

Protein sequence

MVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKLKKIPLVS

Homology

[Close]

BLAST of MELO3C027564 vs. NCBI nr
Match: XP_008461606.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo] >KAA0034019.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 2   VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 61
           VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE
Sbjct: 299 VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 358

Query: 62  KLKKIPLV 70
           KLKKIPL+
Sbjct: 359 KLKKIPLM 366

[Close]

BLAST of MELO3C027564 vs. NCBI nr
Match: XP_022978585.1 (protein RDM16-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 2   VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 61
           VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE
Sbjct: 275 VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 334

Query: 62  KLKKIPLV 70
           KLKKIPL+
Sbjct: 335 KLKKIPLM 342

[Close]

BLAST of MELO3C027564 vs. NCBI nr
Match: XP_038893249.1 (protein RDM16 isoform X1 [Benincasa hispida])

HSP 1 Score: 117.5 bits (293), Expect = 4.7e-23
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 2   VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 61
           VSSISTTNENKGVSITRSHEVHGKSSTDGTS+TAGKSGNLSLDALAKAKKALQMQKELAE
Sbjct: 299 VSSISTTNENKGVSITRSHEVHGKSSTDGTSATAGKSGNLSLDALAKAKKALQMQKELAE 358

Query: 62  KLKKIPLV 70
           KLKKIPL+
Sbjct: 359 KLKKIPLM 366

[Close]

BLAST of MELO3C027564 vs. NCBI nr
Match: KAG6601028.1 (Protein RDM16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 6.2e-23
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 2   VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 61
           VSSISTTNENKGVSITRSHEVHGKSSTDGTSS+AGKSGNLSLDALAKAKKALQMQKELAE
Sbjct: 282 VSSISTTNENKGVSITRSHEVHGKSSTDGTSSSAGKSGNLSLDALAKAKKALQMQKELAE 341

Query: 62  KLKKIPLV 70
           KLKKIPL+
Sbjct: 342 KLKKIPLM 349

[Close]

BLAST of MELO3C027564 vs. NCBI nr
Match: KAG7031831.1 (Protein RDM16 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.1 bits (292), Expect = 6.2e-23
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 2   VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 61
           VSSISTTNENKGVSITRSHEVHGKSSTDGTSS+AGKSGNLSLDALAKAKKALQMQKELAE
Sbjct: 282 VSSISTTNENKGVSITRSHEVHGKSSTDGTSSSAGKSGNLSLDALAKAKKALQMQKELAE 341

Query: 62  KLKKIPLV 70
           KLKKIPL+
Sbjct: 342 KLKKIPLM 349

[Close]

BLAST of MELO3C027564 vs. ExPASy Swiss-Prot
Match: Q9C7E7 (Protein RDM16 OS=Arabidopsis thaliana OX=3702 GN=RDM16 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-10
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 2   VSSISTTNENKGVSITRSHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAKAKKALQMQ 61
           VSSISTT+ENK  S+ RSHEV GKSSTDG   STAGK S NL LD+    AKA+KALQ+Q
Sbjct: 183 VSSISTTDENK-ASVVRSHEVPGKSSTDGRPLSTAGKSSANLPLDSSALAAKARKALQLQ 242

Query: 62  KELAEKLKKIPLV 70
           K LA++LK +PL+
Sbjct: 243 KGLADRLKNLPLL 254

[Close]

BLAST of MELO3C027564 vs. ExPASy TrEMBL
Match: A0A6J1IQJ7 (protein RDM16-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478519 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-23
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 2   VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 61
           VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE
Sbjct: 275 VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 334

Query: 62  KLKKIPLV 70
           KLKKIPL+
Sbjct: 335 KLKKIPLM 342

[Close]

BLAST of MELO3C027564 vs. ExPASy TrEMBL
Match: A0A5A7SXX5 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00020 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-23
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 2   VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 61
           VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE
Sbjct: 299 VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 358

Query: 62  KLKKIPLV 70
           KLKKIPL+
Sbjct: 359 KLKKIPLM 366

[Close]

BLAST of MELO3C027564 vs. ExPASy TrEMBL
Match: A0A1S3CF39 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo OX=3656 GN=LOC103500170 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-23
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 2   VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 61
           VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE
Sbjct: 299 VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 358

Query: 62  KLKKIPLV 70
           KLKKIPL+
Sbjct: 359 KLKKIPLM 366

[Close]

BLAST of MELO3C027564 vs. ExPASy TrEMBL
Match: A0A6J1GYZ9 (protein RDM16-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458515 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-23
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 2   VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 61
           VSSISTTNENKGVSITRSHEVHGKSSTDGTSS+AGKSGNLSLDALAKAKKALQMQKELAE
Sbjct: 275 VSSISTTNENKGVSITRSHEVHGKSSTDGTSSSAGKSGNLSLDALAKAKKALQMQKELAE 334

Query: 62  KLKKIPLV 70
           KLKKIPL+
Sbjct: 335 KLKKIPLM 342

[Close]

BLAST of MELO3C027564 vs. ExPASy TrEMBL
Match: A0A6J1ILJ1 (protein RDM16-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477318 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-23
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 2   VSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 61
           VSSISTTNENKGVSI RSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE
Sbjct: 291 VSSISTTNENKGVSIARSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAE 350

Query: 62  KLKKIPLV 70
           KLKKIPL+
Sbjct: 351 KLKKIPLM 358

[Close]

BLAST of MELO3C027564 vs. TAIR 10
Match: AT1G28060.1 (Pre-mRNA-splicing factor 3 )

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 2   VSSISTTNENKGVSITRSHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAKAKKALQMQ 61
           VSSISTT+ENK  S+ RSHEV GKSSTDG   STAGK S NL LD+    AKA+KALQ+Q
Sbjct: 183 VSSISTTDENK-ASVVRSHEVPGKSSTDGRPLSTAGKSSANLPLDSSALAAKARKALQLQ 242

Query: 62  KELAEKLKKIPLV 70
           K LA++LK +PL+
Sbjct: 243 KGLADRLKNLPLL 254

The following BLAST results are available for this feature:

BLAST of MELO3C027564 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461606.1	2.1e-23	98.53	PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo] >KAA0034019...	[more]
XP_022978585.1	2.1e-23	98.53	protein RDM16-like isoform X1 [Cucurbita maxima]	[more]
XP_038893249.1	4.7e-23	97.06	protein RDM16 isoform X1 [Benincasa hispida]	[more]
KAG6601028.1	6.2e-23	97.06	Protein RDM16, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7031831.1	6.2e-23	97.06	Protein RDM16 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MELO3C027564 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7E7	1.6e-10	65.75	Protein RDM16 OS=Arabidopsis thaliana OX=3702 GN=RDM16 PE=2 SV=1	[more]

BLAST of MELO3C027564 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IQJ7	1.0e-23	98.53	protein RDM16-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478519 PE=4 S...	[more]
A0A5A7SXX5	1.0e-23	98.53	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CF39	1.0e-23	98.53	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo OX=3656 GN=LOC1035001...	[more]
A0A6J1GYZ9	3.0e-23	97.06	protein RDM16-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458515 PE=4...	[more]
A0A6J1ILJ1	3.9e-23	97.06	protein RDM16-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477318 PE=4 S...	[more]

BLAST of MELO3C027564 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28060.1	1.2e-11	65.75	Pre-mRNA-splicing factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 43..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR14212:SF2	SUBFAMILY NOT NAMED	coord: 2..69
IPR027104	U4/U6 small nuclear ribonucleoprotein Prp3	PANTHER	PTHR14212	U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED	coord: 2..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027564.1	MELO3C027564.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex