MELO3C027522 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027522
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Girdin-like
Location	chr02: 3716927 .. 3717955 (+)
RNA-Seq Expression	MELO3C027522
Synteny	MELO3C027522

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTACAAGAGTATGATTTTTCATACGATCCTGAAGATTGTCAAGGAAAAAAATGTCGAGCAGTATGCGCATGGAAATCTGTGAGGAAGATAAAAGACAAAGGACAGTACGAAGGAGTTACTAGTGGGTACTAGACATATCAGGCAAACATAAGAAAGAATATAATAGTTACCTCAAGGGAGGTAGTTGAAAGGGTAAAAGAGACAAGCATCGAACAACTAAATTAGTGGGTTGAGAAGAGTAAAGAATTAGAAGAGAAAAATCAACTGTTAGAACAAGAGAATGAGAAACTTCGTAAAAAGACAAGTCAATGGATAGATCATGCGACTTATTTGCAGAAAGAACTAAAAAAGACGAAAAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAGAATCTTGAAACGTTAGATAAGGAGATGATGCAAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAGCAGTGGAGTTGTCGGATGAATATATTAAAGATTTAAAAAGTGGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATAAATCAATTGGAAAACGAGAAACAAAAATAATGGATTTGGAAGCACACAATCATTCTCTGCGTCAAACTTTTGATGACCTACATCTGAAGATGACTGAGCGCTCTAAAGAGTATAAGATACTGAAAAATTATGTCGATTCCTTACACCATCAACTTATCGCATTTCAAAATTCAAGTGAGAGGATTGTGTAGGAATATGAGTCATTAAAGACGGATTACGTGTAAATGAAGGTTGATTATGGTCTGCAAATGAAATATTTTCAGGTGCTAGTGGAAAGTGTAGATCAGACGATTGAATTTCTTAGAATGGTGTCTAGAAGAGAAAATGGTTTTGCAGAATGAACAGCTGATTTGAGGGTTAATTTTTTTCTCAATGCAACCTCACGCAGATGATCTAAATAGATTCTTGAAGATGGTATGCAGAGCACTCGAGCATTTTGGTCGTTTTCATTAATTATTCATTTTGCTATTGA

mRNA sequence

TCTACAAGAGTATGATTTTTCATACGATCCTGAAGATTGTCAAGGAAAAAAATGTCGAGCAGTATGCGCATGGAAATCTGTGAGGAAGATAAAAGACAAAGGACAGTACGAAGGAGTTACTAGTGGGTACTAGACATATCAGGCAAACATAAGAAAGAATATAATAGTTACCTCAAGGGAGGTAGTTGAAAGGGTAAAAGAGACAAGCATCGAACAACTAAATTAGTGGGTTGAGAAGAGTAAAGAATTAGAAGAGAAAAATCAACTGTTAGAACAAGAGAATGAGAAACTTCGTAAAAAGACAAGTCAATGGATAGATCATGCGACTTATTTGCAGAAAGAACTAAAAAAGACGAAAAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAGAATCTTGAAACGTTAGATAAGGAGATGATGCAAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAGCAGTGGAGTTGTCGGATGAATATATTAAAGATTTAAAAAGTGGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATAAATCAATTGGAAAACGAGAAACAAAAATAATGGATTTGGAAGCACACAATCATTCTCTGCGTCAAACTTTTGATGACCTACATCTGAAGATGACTGAGCGCTCTAAAGAGTATAAGATACTGAAAAATTATGTCGATTCCTTACACCATCAACTTATCGCATTTCAAAATTCAAGTGAGAGGATTGTGTAGGAATATGAGTCATTAAAGACGGATTACGTGTAAATGAAGGTTGATTATGGTCTGCAAATGAAATATTTTCAGGTGCTAGTGGAAAGTGTAGATCAGACGATTGAATTTCTTAGAATGGTGTCTAGAAGAGAAAATGGTTTTGCAGAATGAACAGCTGATTTGAGGGTTAATTTTTTTCTCAATGCAACCTCACGCAGATGATCTAAATAGATTCTTGAAGATGGTATGCAGAGCACTCGAGCATTTTGGTCGTTTTCATTAATTATTCATTTTGCTATTGA

Coding sequence (CDS)

ATGATGCAAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAGCAGTGGAGTTGTCGGATGAATATATTAAAGATTTAAAAAGTGGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATAAATCAATTGGAAAACGAGAAACAAAAATAATGGATTTGGAAGCACACAATCATTCTCTGCGTCAAACTTTTGATGACCTACATCTGAAGATGACTGAGCGCTCTAAAGAGTATAAGATACTGAAAAATTATGTCGATTCCTTACACCATCAACTTATCGCATTTCAAAATTCAAGTGAGAGGATTGTGTAG

Protein sequence

MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDLEAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERIV

Homology

[Close]

BLAST of MELO3C027522 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
           M +MNKANRSLKNEKTTLQA V   DEYIKDL++GKEYFLELVNDLN SIGKRET+IMDL
Sbjct: 177 MRRMNKANRSLKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDL 236

Query: 61  EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
           EA NHSLRQT D+LHLKM ERS+EY+ILKNYVDSLH+QL A QNSS+RI
Sbjct: 237 EAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRI 285

[Close]

BLAST of MELO3C027522 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 3.7e-38
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
           M +MNKANR LKNEKTTLQA V   DEYIKDL++GKEYFLELVNDLN SIGKRET+IMDL
Sbjct: 129 MRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDL 188

Query: 61  EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
           EA NHSL QT D LHLKM ERS+EY+ILKNYVDSLH+QL A QNSS+RI
Sbjct: 189 EAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRI 237

[Close]

BLAST of MELO3C027522 vs. NCBI nr
Match: TYK23955.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 4.8e-38
Identity = 87/109 (79.82%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
           M +MNKANRSLKNEKTTL+A V   DEYIKDL+SGKEYFLE VNDL+ SIG RET+IMDL
Sbjct: 260 MRRMNKANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDL 319

Query: 61  EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
           EAHNHSLRQ  D LHLKM ERS+EY+ILKNY DSLH+QLIAFQNSS+RI
Sbjct: 320 EAHNHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAFQNSSKRI 368

[Close]

BLAST of MELO3C027522 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 4.8e-38
Identity = 87/109 (79.82%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
           M +MNKANRSLKNEKTTL+A V   DEYIKDL+SGKEYFLE VNDL+ SIG RET+IMDL
Sbjct: 186 MRRMNKANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDL 245

Query: 61  EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
           EAHNHSLRQ  D LHLKM ERS+EY+ILKNY DSLH+QLIAFQNSS+RI
Sbjct: 246 EAHNHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAFQNSSKRI 294

[Close]

BLAST of MELO3C027522 vs. NCBI nr
Match: KAA0037780.1 (girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-37
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
           M +MNKANRSLKNEKTTLQA V   DEYIKDL++GKEYFLELVNDLN SI KRET+IMDL
Sbjct: 136 MRRMNKANRSLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIVKRETQIMDL 195

Query: 61  EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
           EA NHSLRQT D+LHLKM ERS+EY+ILKNY DSLH QL A QNSS+RI
Sbjct: 196 EAQNHSLRQTIDNLHLKMAERSEEYEILKNYADSLHFQLTAHQNSSKRI 244

[Close]

BLAST of MELO3C027522 vs. ExPASy TrEMBL
Match: A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.4e-40
Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
           M +MNKANRSLKNEKTTLQA V   DEYIKDL++GKEYFLELVNDLN SIGKRET+IMDL
Sbjct: 177 MRRMNKANRSLKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDL 236

Query: 61  EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
           EA NHSLRQT D+LHLKM ERS+EY+ILKNYVDSLH+QL A QNSS+RI
Sbjct: 237 EAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRI 285

[Close]

BLAST of MELO3C027522 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.8e-38
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
           M +MNKANR LKNEKTTLQA V   DEYIKDL++GKEYFLELVNDLN SIGKRET+IMDL
Sbjct: 129 MRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDL 188

Query: 61  EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
           EA NHSL QT D LHLKM ERS+EY+ILKNYVDSLH+QL A QNSS+RI
Sbjct: 189 EAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRI 237

[Close]

BLAST of MELO3C027522 vs. ExPASy TrEMBL
Match: A0A5D3DK34 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 87/109 (79.82%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
           M +MNKANRSLKNEKTTL+A V   DEYIKDL+SGKEYFLE VNDL+ SIG RET+IMDL
Sbjct: 260 MRRMNKANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDL 319

Query: 61  EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
           EAHNHSLRQ  D LHLKM ERS+EY+ILKNY DSLH+QLIAFQNSS+RI
Sbjct: 320 EAHNHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAFQNSSKRI 368

[Close]

BLAST of MELO3C027522 vs. ExPASy TrEMBL
Match: A0A1S4DX26 (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 87/109 (79.82%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
           M +MNKANRSLKNEKTTL+A V   DEYIKDL+SGKEYFLE VNDL+ SIG RET+IMDL
Sbjct: 186 MRRMNKANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDL 245

Query: 61  EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
           EAHNHSLRQ  D LHLKM ERS+EY+ILKNY DSLH+QLIAFQNSS+RI
Sbjct: 246 EAHNHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAFQNSSKRI 294

[Close]

BLAST of MELO3C027522 vs. ExPASy TrEMBL
Match: A0A5D3DUG2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.7e-38
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
           M +MNKANRSLKNEKTTLQA V   DEYIKDL++GKEYFLELVNDLN SI KRET+IMDL
Sbjct: 136 MRRMNKANRSLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIVKRETQIMDL 195

Query: 61  EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
           EA NHSLRQT D+LHLKM ERS+EY+ILKNY DSLH QL A QNSS+RI
Sbjct: 196 EAQNHSLRQTIDNLHLKMAERSEEYEILKNYADSLHFQLTAHQNSSKRI 244

The following BLAST results are available for this feature:

BLAST of MELO3C027522 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18656.1	1.9e-39	81.65	girdin-like [Cucumis melo var. makuwa]	[more]
TYK23632.1	3.7e-38	79.82	girdin-like [Cucumis melo var. makuwa]	[more]
TYK23955.1	4.8e-38	79.82	girdin-like [Cucumis melo var. makuwa]	[more]
XP_016900531.1	4.8e-38	79.82	PREDICTED: girdin-like [Cucumis melo]	[more]
KAA0037780.1	1.4e-37	79.82	girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var...	[more]

BLAST of MELO3C027522 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C027522 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D533	9.4e-40	81.65	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE...	[more]
A0A5D3DJ95	1.8e-38	79.82	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P...	[more]
A0A5D3DK34	2.3e-38	79.82	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE...	[more]
A0A1S4DX26	2.3e-38	79.82	girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1	[more]
A0A5D3DUG2	6.7e-38	79.82	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 P...	[more]

BLAST of MELO3C027522 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027522.1	MELO3C027522.1	mRNA