Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptide exon CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAGGGGTCGGGAAGCAAGCAAGATAATCTAATAACTTCGAAAAAGAGGGGGAGGATTGAACCGCAAAAAGAAGACGTCACTGTACAAAAGAAACAACGGATAAAAAGCT TGGTAAACTACAAATTTATTTTCTAATGAGTTGTGGTCTGTGTAGATTTCAAAAAGTCGAGTTTACAGAAGGAAACTTGAAGAAAAGAAACAAAAAGAGGTTGAAGAAAAAGTATGTGTTTTACATTTTGTTGTACTTCAATTATGTATTATATAAATTGATTATAACTTTGCAAACAG GAAAATACTGAAAGCAAAAGTGAAGAAGAGGAACAAGGAGAAGAAGATGAA CAACGAGAAGAAGATGAAAAAGTAGAAGAAGATAATGATGAAGAAGTGGAGGAATAGACAGAGGTAGATGAAGA mRNA sequence
ATGGTGGAGGGGTCGGGAAGCAAGCAAGATAATCTAATAACTTCGAAAAAGAGGGGGAGGATTGAACCGCAAAAAGAAGACGTCACTGTACAAAAGAAACAACGGATAAAAAGCTAGGAAAATACTGAAAGCAAAAGTGAAGAAGAGGAACAAGGAGAAGAAGATGAATAGAAGAAGATAATGATGAAGAAGTGGAGGAATAGACAGAGGTAGATGAAGA Coding sequence (CDS)
ATGGTGGAGGGGTCGGGAAGCAAGCAAGATAATCTAATAACTTCGAAAAAGAGGGGGAGGATTGAACCGCAAAAAGAAGACGTCACTGTACAAAAGAAACAACGGATAAAAAGCTAG Protein sequence
MVEGSGSKQDNLITSKKRGRIEPQKEDVTVQKKQRIKS
Homology
BLAST of MELO3C027518 vs. NCBI nr
Match:
KAA0067216.1 (TPRXL isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 57.8 bits (138), Expect = 2.4e-05
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0
Query: 1 MVEGSGSKQDNLITSKKRGRIEPQKEDVTVQKKQRIKS 39 MVEG GSKQD+ ITSKKRGR E KEDVTVQKKQRIKS Sbjct: 31 MVEGLGSKQDSPITSKKRGRTEAPKEDVTVQKKQRIKS 68
BLAST of MELO3C027518 vs. NCBI nr
Match:
KAA0048427.1 (hypothetical protein E6C27_scaffold61G00010 [Cucumis melo var. makuwa] >TYK28223.1 hypothetical protein E5676_scaffold600G00010 [Cucumis melo var. makuwa])
HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 0
Query: 2 VEGSGSKQDNLITSKKRGRIEPQKEDVTVQKKQRIKS 39 VEG G+K+D+ +TSKKRGR EP KEDVTVQKKQ+IKS Sbjct: 71 VEGLGNKRDSPVTSKKRGRTEPPKEDVTVQKKQKIKS 107
BLAST of MELO3C027518 vs. ExPASy TrEMBL
Match:
A0A5A7VL86 (TPRXL isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00210 PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0
Query: 1 MVEGSGSKQDNLITSKKRGRIEPQKEDVTVQKKQRIKS 39 MVEG GSKQD+ ITSKKRGR E KEDVTVQKKQRIKS Sbjct: 31 MVEGLGSKQDSPITSKKRGRTEAPKEDVTVQKKQRIKS 68
BLAST of MELO3C027518 vs. ExPASy TrEMBL
Match:
A0A5D3DX05 (DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00010 PE=4 SV=1)
HSP 1 Score: 54.7 bits (130), Expect = 9.9e-05
Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 0
Query: 2 VEGSGSKQDNLITSKKRGRIEPQKEDVTVQKKQRIKS 39 VEG G+K+D+ +TSKKRGR EP KEDVTVQKKQ+IKS Sbjct: 71 VEGLGNKRDSPVTSKKRGRTEPPKEDVTVQKKQKIKS 107
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0067216.1 2.4e-05 84.21 TPRXL isoform X1 [Cucumis melo var. makuwa] [more]
KAA0048427.1 2.0e-04 75.68 hypothetical protein E6C27_scaffold61G00010 [Cucumis melo var. makuwa] >TYK28223... [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7VL86 1.2e-05 84.21 TPRXL isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G002... [more]
A0A5D3DX05 9.9e-05 75.68 DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
A T G G T G G A G G G G T C G G G A A G C A A G C A A G A T A A T C T A A T A A C T T C G A A A A A G A G G G G G A G G A T T G A A C C G C A A A A A G A A G A C G T C A C T G T A C A A A A G A A A C A A C G G A T A A A A A G C T A G G A A A A T A C T G A A A G C A A A A G T G A A G A A G A G G A A C A A G G A G A A G A A G A T G A A T A G A A G A A G A T A A T G A T G A A G A A G T G G A G G A A T A G A C A G A G G T A G A T G A A G A 20 40 60 80 100 120 140 160 180 200 220 Score = Score = Sequence mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..38
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 13..38
Relationships
The following mRNA feature(s) are a part of this gene: