MELO3C027473 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027473
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Girdin-like
Location	chr05: 24026436 .. 24026845 (-)
RNA-Seq Expression	MELO3C027473
Synteny	MELO3C027473

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTTTGGGATCCAACATATCCAAGGAAGGAAGCTTGGTTGTTTTTCTTTGCAAAACCAACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCGGTGATATATAGATGCAGAGATTTTCATGGTGTGTCTTTGTTGGGACCATGGGGAGGTGTTAACTATACACCATTGTTAGCTTTTTGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATATGCAAGAGTCTGACTTTTCATACCATCCTGAAGATTGCCAAGGAAAAAAACGTCAAGCAGTATGCGCATGGAAATCTGTAAGGAAGATAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGGCATGGCAGACAAACAAAAAGAAGAATATAATAGATATCTCA

mRNA sequence

ATGACAGTTTGGGATCCAACATATCCAAGGAAGGAAGCTTGGTTGTTTTTCTTTGCAAAACCAACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCGGTGATATATAGATGCAGAGATTTTCATGGTGTGTCTTTGTTGGGACCATGGGGAGGTGTTAACTATACACCATTGTTAGCTTTTTGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATATGCAAGAGTCTGACTTTTCATACCATCCTGAAGATTGCCAAGGAAAAAAACGTCAAGCAGTATGCGCATGGAAATCTGTAAGGAAGATAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGGCATGGCAGACAAACAAAAAGAAGAATATAATAGATATCTCA

Coding sequence (CDS)

ATGACAGTTTGGGATCCAACATATCCAAGGAAGGAAGCTTGGTTGTTTTTCTTTGCAAAACCAACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCGGTGATATATAGATGCAGAGATTTTCATGGTGTGTCTTTGTTGGGACCATGGGGAGGTGTTAACTATACACCATTGTTAGCTTTTTGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATATGCAAGAGTCTGACTTTTCATACCATCCTGAAGATTGCCAAGGAAAAAAACGTCAAGCAGTATGCGCATGGAAATCTGTAAGGAAGATAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGGCATGGCAGACAAACAAAAAGAAGAATATAA

Protein sequence

MTVWDPTYPRKEAWLFFFAKPTSENVIWKAQWMPLKAVIYRCRDFHGVSLLGPWGGVNYTPLLAFCQVWLKQFIPPTHNMQESDFSYHPEDCQGKKRQAVCAWKSVRKIKTKDITKELLVGTRHGRQTKRRI

Homology

[Close]

BLAST of MELO3C027473 vs. NCBI nr
Match: KAA0036941.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 2.0e-54
Identity = 99/112 (88.39%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MTVWDPTYPRKEAWLFFFAKPTSENVIWKAQWMPLKAVIYRCRDFHGVSLLGPWGGVNYT 60
           M VWDPTYPRKEAWL FFAK TSENVIWKAQWMPLKAVIYRC DFH V LLGPWGGVNYT
Sbjct: 266 MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 325

Query: 61  PLLAFCQVWLKQFIPPTHNMQESDFSYHPEDCQGKKRQAVCAWKSVRKIKTK 113
           PLL   QVWLKQFIPPTHN+QESDFSY PEDCQGKKRQAVCAWKS+RKIK K
Sbjct: 326 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDK 377

[Close]

BLAST of MELO3C027473 vs. NCBI nr
Match: KAA0056623.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 2.6e-54
Identity = 101/131 (77.10%), Postives = 108/131 (82.44%), Query Frame = 0


Query: 1   MTVWDPTYPRKEAWLFFFAKPTSENVIWKAQWMPLKAVIYRCRDFHGVSLLGPWGGVNYT 60
           MTVWDPTYPRKEAWL FFAK TSENVIWKAQWMPLKA IYRC DFH V LLGPWGGVNYT
Sbjct: 287 MTVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAAIYRCEDFHSVPLLGPWGGVNYT 346

Query: 61  PLLAFCQVWLKQFIPPTHNMQESDFSYHPEDCQGKKRQAVCAWKSVRKIKTKDITKELLV 120
           PLL   QVWLKQFIPPT N+QESDFSY+PEDCQGKKRQAVCAWKS+RKIK K   + +  
Sbjct: 347 PLLVLRQVWLKQFIPPTQNLQESDFSYNPEDCQGKKRQAVCAWKSIRKIKDKGHCEGVTS 406

Query: 121 GTRHGRQTKRR 132
           G    +  KR+
Sbjct: 407 GYEAWKANKRK 417

[Close]

BLAST of MELO3C027473 vs. NCBI nr
Match: TYK16558.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 98/112 (87.50%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MTVWDPTYPRKEAWLFFFAKPTSENVIWKAQWMPLKAVIYRCRDFHGVSLLGPWGGVNYT 60
           M VWD TYPRKEAWL FFAK TSENVIWKAQWMPLKAVIYRC DFH V LLGPWGGVNYT
Sbjct: 1   MAVWDQTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 60

Query: 61  PLLAFCQVWLKQFIPPTHNMQESDFSYHPEDCQGKKRQAVCAWKSVRKIKTK 113
           PLL   QVWLKQFIPPTHN+QESDFSY PEDCQGKKRQAVCAWKS+RKIK K
Sbjct: 61  PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDK 112

[Close]

BLAST of MELO3C027473 vs. NCBI nr
Match: KAA0044912.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 98/112 (87.50%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MTVWDPTYPRKEAWLFFFAKPTSENVIWKAQWMPLKAVIYRCRDFHGVSLLGPWGGVNYT 60
           M VWD TYPRKEAWL FFAK TSENVIWKAQWMPLKAVIYRC DFH V LLGPWGGVNYT
Sbjct: 110 MAVWDQTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 169

Query: 61  PLLAFCQVWLKQFIPPTHNMQESDFSYHPEDCQGKKRQAVCAWKSVRKIKTK 113
           PLL   QVWLKQFIPPTHN+QESDFSY PEDCQGKKRQAVCAWKS+RKIK K
Sbjct: 170 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDK 221

[Close]

BLAST of MELO3C027473 vs. NCBI nr
Match: KAA0046902.1 (girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 4.8e-53
Identity = 97/112 (86.61%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MTVWDPTYPRKEAWLFFFAKPTSENVIWKAQWMPLKAVIYRCRDFHGVSLLGPWGGVNYT 60
           M VWDPTYPRKEAWL FFAK TSENVIWKAQWMPLKAVIYRC DFH V LLGPWGGVNYT
Sbjct: 77  MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 136

Query: 61  PLLAFCQVWLKQFIPPTHNMQESDFSYHPEDCQGKKRQAVCAWKSVRKIKTK 113
           PLL   QVWLKQFIPPTHN+QESDFSY PEDCQGKK QAVC WKS+RKIK K
Sbjct: 137 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKCQAVCTWKSIRKIKDK 188

[Close]

BLAST of MELO3C027473 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 9.5e-55
Identity = 99/112 (88.39%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MTVWDPTYPRKEAWLFFFAKPTSENVIWKAQWMPLKAVIYRCRDFHGVSLLGPWGGVNYT 60
           M VWDPTYPRKEAWL FFAK TSENVIWKAQWMPLKAVIYRC DFH V LLGPWGGVNYT
Sbjct: 266 MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 325

Query: 61  PLLAFCQVWLKQFIPPTHNMQESDFSYHPEDCQGKKRQAVCAWKSVRKIKTK 113
           PLL   QVWLKQFIPPTHN+QESDFSY PEDCQGKKRQAVCAWKS+RKIK K
Sbjct: 326 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDK 377

[Close]

BLAST of MELO3C027473 vs. ExPASy TrEMBL
Match: A0A5A7UL51 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001430 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 101/131 (77.10%), Postives = 108/131 (82.44%), Query Frame = 0


Query: 1   MTVWDPTYPRKEAWLFFFAKPTSENVIWKAQWMPLKAVIYRCRDFHGVSLLGPWGGVNYT 60
           MTVWDPTYPRKEAWL FFAK TSENVIWKAQWMPLKA IYRC DFH V LLGPWGGVNYT
Sbjct: 287 MTVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAAIYRCEDFHSVPLLGPWGGVNYT 346

Query: 61  PLLAFCQVWLKQFIPPTHNMQESDFSYHPEDCQGKKRQAVCAWKSVRKIKTKDITKELLV 120
           PLL   QVWLKQFIPPT N+QESDFSY+PEDCQGKKRQAVCAWKS+RKIK K   + +  
Sbjct: 347 PLLVLRQVWLKQFIPPTQNLQESDFSYNPEDCQGKKRQAVCAWKSIRKIKDKGHCEGVTS 406

Query: 121 GTRHGRQTKRR 132
           G    +  KR+
Sbjct: 407 GYEAWKANKRK 417

[Close]

BLAST of MELO3C027473 vs. ExPASy TrEMBL
Match: A0A5D3CZ50 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.1e-54
Identity = 98/112 (87.50%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MTVWDPTYPRKEAWLFFFAKPTSENVIWKAQWMPLKAVIYRCRDFHGVSLLGPWGGVNYT 60
           M VWD TYPRKEAWL FFAK TSENVIWKAQWMPLKAVIYRC DFH V LLGPWGGVNYT
Sbjct: 1   MAVWDQTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 60

Query: 61  PLLAFCQVWLKQFIPPTHNMQESDFSYHPEDCQGKKRQAVCAWKSVRKIKTK 113
           PLL   QVWLKQFIPPTHN+QESDFSY PEDCQGKKRQAVCAWKS+RKIK K
Sbjct: 61  PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDK 112

[Close]

BLAST of MELO3C027473 vs. ExPASy TrEMBL
Match: A0A5A7TNJ1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.1e-54
Identity = 98/112 (87.50%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MTVWDPTYPRKEAWLFFFAKPTSENVIWKAQWMPLKAVIYRCRDFHGVSLLGPWGGVNYT 60
           M VWD TYPRKEAWL FFAK TSENVIWKAQWMPLKAVIYRC DFH V LLGPWGGVNYT
Sbjct: 110 MAVWDQTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 169

Query: 61  PLLAFCQVWLKQFIPPTHNMQESDFSYHPEDCQGKKRQAVCAWKSVRKIKTK 113
           PLL   QVWLKQFIPPTHN+QESDFSY PEDCQGKKRQAVCAWKS+RKIK K
Sbjct: 170 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDK 221

[Close]

BLAST of MELO3C027473 vs. ExPASy TrEMBL
Match: A0A5D3BYI1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.3e-53
Identity = 97/112 (86.61%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MTVWDPTYPRKEAWLFFFAKPTSENVIWKAQWMPLKAVIYRCRDFHGVSLLGPWGGVNYT 60
           M VWDPTYPRKEAWL FFAK TSENVIWKAQWMPLKAVIYRC DFH V LLGPWGGVNYT
Sbjct: 77  MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 136

Query: 61  PLLAFCQVWLKQFIPPTHNMQESDFSYHPEDCQGKKRQAVCAWKSVRKIKTK 113
           PLL   QVWLKQFIPPTHN+QESDFSY PEDCQGKK QAVC WKS+RKIK K
Sbjct: 137 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKCQAVCTWKSIRKIKDK 188

The following BLAST results are available for this feature:

BLAST of MELO3C027473 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036941.1	2.0e-54	88.39	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0056623.1	2.6e-54	77.10	girdin-like [Cucumis melo var. makuwa]	[more]
TYK16558.1	1.7e-53	87.50	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0044912.1	1.7e-53	87.50	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0046902.1	4.8e-53	86.61	girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var...	[more]

BLAST of MELO3C027473 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C027473 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5S7	9.5e-55	88.39	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=...	[more]
A0A5A7UL51	1.2e-54	77.10	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001430 P...	[more]
A0A5D3CZ50	8.1e-54	87.50	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE...	[more]
A0A5A7TNJ1	8.1e-54	87.50	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE...	[more]
A0A5D3BYI1	2.3e-53	86.61	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE...	[more]

BLAST of MELO3C027473 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48200	PROTEIN, PUTATIVE-RELATED	coord: 9..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027473.1	MELO3C027473.1	mRNA