MELO3C027277 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027277
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Polygalacturonase
Location	chr06: 27395244 .. 27395756 (+)
RNA-Seq Expression	MELO3C027277
Synteny	MELO3C027277

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTTCATACAACAACTTCTTTTCTTCTCTCATCACTACTACTACTACCCATTATGTTCTTCAATTTAACTGCTTTTGCCGATCCGATAACATTCGACATTCTCAATTTTGGAGACAAACTTGAATCCTTTGCCGCTCCGATAACATTCAACGTTGTCGATTTCGGGGCAAAACCTAACAACATAAAAATCGACTCATCCAAGGCCTTCGAATCCGCATGGAAGCAGGCTTGTAGCTCTTCTAGAGCAGCTACCATTTATGTGCCTAAGGCCAAATTCTACATTTATAGTGCAACTTTTAAAGGGCCATGCAAAAATAATGTCATTACTTTACAAATGGATGGCACTCTGGTGGCTCCCCCAAATTTCCATCTCACTGCCCAATCTAAAACTTGGATCATTTTTCGTCAGGTTAATGGAGTTACTGTGTTGGGCGGTGTTATTGATGGTCAAGGAAGTGAACTTTGGGCTTGCAAACACTCTGGCAAGACATGCCCTCGTGGAACCACA

mRNA sequence

ATGGCTCTTCATACAACAACTTCTTTTCTTCTCTCATCACTACTACTACTACCCATTATGTTCTTCAATTTAACTGCTTTTGCCGATCCGATAACATTCGACATTCTCAATTTTGGAGACAAACTTGAATCCTTTGCCGCTCCGATAACATTCAACGTTGTCGATTTCGGGGCAAAACCTAACAACATAAAAATCGACTCATCCAAGGCCTTCGAATCCGCATGGAAGCAGGCTTGTAGCTCTTCTAGAGCAGCTACCATTTATGTGCCTAAGGCCAAATTCTACATTTATAGTGCAACTTTTAAAGGGCCATGCAAAAATAATGTCATTACTTTACAAATGGATGGCACTCTGGTGGCTCCCCCAAATTTCCATCTCACTGCCCAATCTAAAACTTGGATCATTTTTCGTCAGGTTAATGGAGTTACTGTGTTGGGCGGTGTTATTGATGGTCAAGGAAGTGAACTTTGGGCTTGCAAACACTCTGGCAAGACATGCCCTCGTGGAACCACA

Coding sequence (CDS)

ATGGCTCTTCATACAACAACTTCTTTTCTTCTCTCATCACTACTACTACTACCCATTATGTTCTTCAATTTAACTGCTTTTGCCGATCCGATAACATTCGACATTCTCAATTTTGGAGACAAACTTGAATCCTTTGCCGCTCCGATAACATTCAACGTTGTCGATTTCGGGGCAAAACCTAACAACATAAAAATCGACTCATCCAAGGCCTTCGAATCCGCATGGAAGCAGGCTTGTAGCTCTTCTAGAGCAGCTACCATTTATGTGCCTAAGGCCAAATTCTACATTTATAGTGCAACTTTTAAAGGGCCATGCAAAAATAATGTCATTACTTTACAAATGGATGGCACTCTGGTGGCTCCCCCAAATTTCCATCTCACTGCCCAATCTAAAACTTGGATCATTTTTCGTCAGGTTAATGGAGTTACTGTGTTGGGCGGTGTTATTGATGGTCAAGGAAGTGAACTTTGGGCTTGCAAACACTCTGGCAAGACATGCCCTCGTGGAACCACA

Protein sequence

MALHTTTSFLLSSLLLLPIMFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKPNNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPRGTT

Homology

[Close]

BLAST of MELO3C027277 vs. NCBI nr
Match: NP_001284460.1 (polygalacturonase-like precursor [Cucumis melo] >AAC26511.1 polygalacturonase precursor [Cucumis melo])

HSP 1 Score: 347.1 bits (889), Expect = 9.0e-92
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MALHTTTSFLLSSLLLLPIMFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKP 60
           MALHTTTSFLLSSLLLLPIMFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKP
Sbjct: 1   MALHTTTSFLLSSLLLLPIMFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKP 60

Query: 61  NNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVA 120
           NNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVA
Sbjct: 61  NNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVA 120

Query: 121 PPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 172
           PPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPRGTT
Sbjct: 121 PPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 171

[Close]

BLAST of MELO3C027277 vs. NCBI nr
Match: KAA0060589.1 (polygalacturonase-like precursor [Cucumis melo var. makuwa] >TYK02282.1 polygalacturonase-like precursor [Cucumis melo var. makuwa])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 20  MFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKPNNIKIDSSKAFESAWKQAC 79
           MFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKPNNIKIDSSKAFESAWKQAC
Sbjct: 1   MFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKPNNIKIDSSKAFESAWKQAC 60

Query: 80  SSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQV 139
           SSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQV
Sbjct: 61  SSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQV 120

Query: 140 NGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 172
           NGVTVLGGVIDGQGSELWACKHSGKTCPRGTT
Sbjct: 121 NGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 152

[Close]

BLAST of MELO3C027277 vs. NCBI nr
Match: XP_004133718.1 (polygalacturonase [Cucumis sativus] >KAE8650186.1 hypothetical protein Csa_011530 [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 1.7e-66
Identity = 136/172 (79.07%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MALHTTTSFLLSSLLLLPIMFFNLTAFADPITFDILNFGDKLE-SFAAPITFNVVDFGAK 60
           M LH TT FLLSS LLLPIMFF+LTAFAD +TF+ILN G K + S AA +TFNVVD+GAK
Sbjct: 1   MTLH-TTYFLLSS-LLLPIMFFSLTAFADTLTFNILNCGAKPDGSIAASLTFNVVDYGAK 60

Query: 61  PNNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLV 120
           P+N K DS+KAF+SAW  ACSSS+AATIYVPKAKFYI SATF GPCKNN ITL+MDGTLV
Sbjct: 61  PDNTKFDSAKAFQSAWTHACSSSKAATIYVPKAKFYISSATFNGPCKNNAITLKMDGTLV 120

Query: 121 APPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 172
           AP NF LTAQSK WI+FRQVNGVTV GGVIDGQGS LWACK SGKTCPRGTT
Sbjct: 121 APSNFQLTAQSKNWILFRQVNGVTVSGGVIDGQGSGLWACKQSGKTCPRGTT 170

[Close]

BLAST of MELO3C027277 vs. NCBI nr
Match: XP_008448091.1 (PREDICTED: polygalacturonase-like [Cucumis melo])

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-50
Identity = 103/171 (60.23%), Postives = 124/171 (72.51%), Query Frame = 0


Query: 1   MALHTTTSFLLSSLLLLPIMFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKP 60
           MALH  TSFLL S L + ++F NL A                  F  P+TFNVVDFG KP
Sbjct: 1   MALHAITSFLLFSTLTVLMLFNNLAA------------------FPTPLTFNVVDFGTKP 60

Query: 61  NNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVA 120
           NN + DSSKA + AW  ACSSS+ ATIYVPKAKFY+ SATF GPCKNN IT+++DG L+A
Sbjct: 61  NNAETDSSKALQLAWMHACSSSKPATIYVPKAKFYVRSATFNGPCKNNHITIRIDGALMA 120

Query: 121 PPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 172
           P +FHLT+ S+ WI+F  VNGVTVLGG++DGQG++LWACK+S  TCPRGTT
Sbjct: 121 PSDFHLTSNSENWILFHNVNGVTVLGGILDGQGTQLWACKNSANTCPRGTT 153

[Close]

BLAST of MELO3C027277 vs. NCBI nr
Match: XP_038888717.1 (polygalacturonase-like [Benincasa hispida])

HSP 1 Score: 206.1 bits (523), Expect = 2.5e-49
Identity = 109/171 (63.74%), Postives = 122/171 (71.35%), Query Frame = 0


Query: 1   MALHTTTSFLLSSLLLLPIMFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKP 60
           MA HT +  LL  LLLL IM FNL A                  FAAP+TFNVVDFGAKP
Sbjct: 1   MAFHTNSFLLL--LLLLVIMSFNLAA------------------FAAPLTFNVVDFGAKP 60

Query: 61  NNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVA 120
           +N K DSSKAF  AW +ACSSS   +IYVPKAKFY+ SATF GPCKNN IT+++DGTLVA
Sbjct: 61  DNAKTDSSKAFLLAWTRACSSSIPTSIYVPKAKFYVRSATFNGPCKNNAITIRIDGTLVA 120

Query: 121 PPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 172
             +FHL  +S+ WIIF  VNGV VLGGVIDGQGS LWACK+SGK CPRG T
Sbjct: 121 SSDFHLNVKSEHWIIFHNVNGVNVLGGVIDGQGSGLWACKNSGKVCPRGAT 151

[Close]

BLAST of MELO3C027277 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.4e-33
Identity = 64/129 (49.61%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 44  SFAAPITFNVVDFGAKPNNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKG 103
           + A+P+T+NV   GAK +  K DS+KAF SAW +AC+S     IYVP   F++    F G
Sbjct: 21  AIASPLTYNVASLGAKADG-KTDSTKAFLSAWAKACASMNPGVIYVPAGTFFLRDVVFSG 80

Query: 104 PCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKH-S 163
           PCKNN IT ++ GTLVAP ++ +   +  WI F  VNGVT+ GG++DGQG+ LWACK   
Sbjct: 81  PCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISGGILDGQGTALWACKACH 140

Query: 164 GKTCPRGTT 172
           G++CP G T
Sbjct: 141 GESCPSGAT 148

[Close]

BLAST of MELO3C027277 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-26
Identity = 65/154 (42.21%), Postives = 95/154 (61.69%), Query Frame = 0


Query: 20  MFFNLTAFADPITFDILNFGDKLESFAAPI--TFNVVDFGAKPNNIKIDSSKAFESAWKQ 79
           M +N +    P+   IL+F   + S A PI  T NV+ +GAKP+  K DS+KAF +AW  
Sbjct: 1   MVYNTSCLILPLALIILDF-TLISSLAHPIPSTLNVLSYGAKPDGSK-DSTKAFLAAWDV 60

Query: 80  ACSSSRAATIYVPKAKFYIYSATFKG-PCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIF 139
           AC+S+   TI VPK +F + +  F G  CK   I++++ G++VAP +F + A SK WI F
Sbjct: 61  ACASANPTTIIVPKGRFLVGNLVFHGNECKQAPISIRIAGSIVAPEDFRIIASSKHWIWF 120

Query: 140 RQVNGVTVLGGVIDGQGSELWACKHS-GKTCPRG 170
             V  V++ GG++D QG+ LW CK++ G  CP G
Sbjct: 121 EDVTDVSIYGGILDAQGTSLWKCKNNGGHNCPTG 152

[Close]

BLAST of MELO3C027277 vs. ExPASy Swiss-Prot
Match: Q8RY29 (Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-16
Identity = 54/135 (40.00%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 44  SFAAPITFNVVDFGAKPNNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIY-SATFK 103
           S   P T +V DFGAK +  K D ++AF +AWK+ACSS+ A  + VPK   Y+  S    
Sbjct: 61  SLRTPTTVSVSDFGAKGDG-KTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLT 120

Query: 104 GPCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQVNGVTVLG---GVIDGQGSELW-- 163
           GPC N+++T+Q+ GTL A            WI+F  VN ++V G   GV+DG G   W  
Sbjct: 121 GPC-NSILTVQIFGTLSASQKRSDYKDISKWIMFDGVNNLSVDGGDTGVVDGNGETWWQN 180

Query: 164 ACK-HSGKTCPRGTT 172
           +CK +  K C +  T
Sbjct: 181 SCKRNKAKPCTKAPT 193

[Close]

BLAST of MELO3C027277 vs. ExPASy Swiss-Prot
Match: Q9SFB7 (Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-15
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 46  AAPITFNVVDFGAKPNNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSA-TFKGP 105
           ++P +FNV  FGAK N    D SKAF  AW+ ACSS+    I  PK + Y+  A TF GP
Sbjct: 66  SSPRSFNVNTFGAKANG--NDDSKAFMKAWEAACSSTGIVYIVAPKNRDYMLKAVTFSGP 125

Query: 106 CKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQVNGVTVL-GGVIDGQGSELW--ACK 161
           CK+++I  ++ G + A  N     + + WI+F  VN + V  GG IDG G   W  +CK
Sbjct: 126 CKSSLIIFKIYGRIEAWENPSDYKERRHWIVFENVNNLRVEGGGRIDGNGHIWWPKSCK 182

[Close]

BLAST of MELO3C027277 vs. ExPASy Swiss-Prot
Match: P48978 (Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.0e-15
Identity = 50/126 (39.68%), Postives = 70/126 (55.56%), Query Frame = 0


Query: 44  SFAAPITFNVVDFGAKPNNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKG 103
           S A   T +V DFGAK N    D ++AF  AWK ACSSS A  + VP+  + +    F G
Sbjct: 92  SSAPAKTISVDDFGAKGNG--ADDTQAFVKAWKAACSSSGAMVLVVPQKNYLVRPIEFSG 151

Query: 104 PCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQVNGVTVLG-GVIDGQGSELWACKHS 163
           PCK+  +TLQ+ GT+ A  +  +      W+IF  V  + V+G G I+G G+  W  K+S
Sbjct: 152 PCKSQ-LTLQIYGTIEASEDRSIYKDIDHWLIFDNVQNLLVVGPGTINGNGNIWW--KNS 211

Query: 164 GKTCPR 169
            K  P+
Sbjct: 212 CKIKPQ 212

[Close]

BLAST of MELO3C027277 vs. ExPASy TrEMBL
Match: O81245 (Polygalacturonase OS=Cucumis melo OX=3656 GN=MPG2 PE=2 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.3e-92
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MALHTTTSFLLSSLLLLPIMFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKP 60
           MALHTTTSFLLSSLLLLPIMFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKP
Sbjct: 1   MALHTTTSFLLSSLLLLPIMFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKP 60

Query: 61  NNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVA 120
           NNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVA
Sbjct: 61  NNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVA 120

Query: 121 PPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 172
           PPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPRGTT
Sbjct: 121 PPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 171

[Close]

BLAST of MELO3C027277 vs. ExPASy TrEMBL
Match: A0A5A7V4D4 (Polygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00900 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.3e-83
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 20  MFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKPNNIKIDSSKAFESAWKQAC 79
           MFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKPNNIKIDSSKAFESAWKQAC
Sbjct: 1   MFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKPNNIKIDSSKAFESAWKQAC 60

Query: 80  SSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQV 139
           SSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQV
Sbjct: 61  SSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQV 120

Query: 140 NGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 172
           NGVTVLGGVIDGQGSELWACKHSGKTCPRGTT
Sbjct: 121 NGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 152

[Close]

BLAST of MELO3C027277 vs. ExPASy TrEMBL
Match: A0A0A0L5E5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110070 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.1e-62
Identity = 121/153 (79.08%), Postives = 133/153 (86.93%), Query Frame = 0


Query: 20  MFFNLTAFADPITFDILNFGDKLE-SFAAPITFNVVDFGAKPNNIKIDSSKAFESAWKQA 79
           MFF+LTAFAD +TF+ILN G K + S AA +TFNVVD+GAKP+N K DS+KAF+SAW  A
Sbjct: 1   MFFSLTAFADTLTFNILNCGAKPDGSIAASLTFNVVDYGAKPDNTKFDSAKAFQSAWTHA 60

Query: 80  CSSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQ 139
           CSSS+AATIYVPKAKFYI SATF GPCKNN ITL+MDGTLVAP NF LTAQSK WI+FRQ
Sbjct: 61  CSSSKAATIYVPKAKFYISSATFNGPCKNNAITLKMDGTLVAPSNFQLTAQSKNWILFRQ 120

Query: 140 VNGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 172
           VNGVTV GGVIDGQGS LWACK SGKTCPRGTT
Sbjct: 121 VNGVTVSGGVIDGQGSGLWACKQSGKTCPRGTT 153

[Close]

BLAST of MELO3C027277 vs. ExPASy TrEMBL
Match: A0A1S3BJI1 (polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103490378 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 6.3e-51
Identity = 103/171 (60.23%), Postives = 124/171 (72.51%), Query Frame = 0


Query: 1   MALHTTTSFLLSSLLLLPIMFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKP 60
           MALH  TSFLL S L + ++F NL A                  F  P+TFNVVDFG KP
Sbjct: 1   MALHAITSFLLFSTLTVLMLFNNLAA------------------FPTPLTFNVVDFGTKP 60

Query: 61  NNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVA 120
           NN + DSSKA + AW  ACSSS+ ATIYVPKAKFY+ SATF GPCKNN IT+++DG L+A
Sbjct: 61  NNAETDSSKALQLAWMHACSSSKPATIYVPKAKFYVRSATFNGPCKNNHITIRIDGALMA 120

Query: 121 PPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 172
           P +FHLT+ S+ WI+F  VNGVTVLGG++DGQG++LWACK+S  TCPRGTT
Sbjct: 121 PSDFHLTSNSENWILFHNVNGVTVLGGILDGQGTQLWACKNSANTCPRGTT 153

[Close]

BLAST of MELO3C027277 vs. ExPASy TrEMBL
Match: A0A0A0K6Z5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G145950 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.7e-49
Identity = 101/171 (59.06%), Postives = 122/171 (71.35%), Query Frame = 0


Query: 1   MALHTTTSFLLSSLLLLPIMFFNLTAFADPITFDILNFGDKLESFAAPITFNVVDFGAKP 60
           MALHT  SFL    L + ++F NL A                  FA P+TFNV+DFG KP
Sbjct: 3   MALHTIASFLFFLTLTVLMLFNNLAA------------------FATPLTFNVLDFGTKP 62

Query: 61  NNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVA 120
           NN + DSSKA + AW  ACSSS+ ATIYVPKAKFY+ SATF GPCKNN IT+++DGTLVA
Sbjct: 63  NNAETDSSKALQLAWMHACSSSKPATIYVPKAKFYVRSATFNGPCKNNDITIRIDGTLVA 122

Query: 121 PPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPRGTT 172
           P +F LT+ S+ WI+F  VNGVTV+GG+IDGQG++LWACK+S  TCP GTT
Sbjct: 123 PSDFRLTSNSENWILFHNVNGVTVIGGIIDGQGTQLWACKNSANTCPSGTT 155

[Close]

BLAST of MELO3C027277 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-31
Identity = 60/123 (48.78%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 50  TFNVVDFGAKPNNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKG-PCKNN 109
           ++NV+ FGAKP+  K D++KAF + W+ AC+SSR  TI VPK +F + S TF G  CK  
Sbjct: 20  SYNVLSFGAKPDG-KTDATKAFMAVWQTACASSRPVTIVVPKGRFLLRSVTFDGSKCKPK 79

Query: 110 VITLQMDGTLVAPPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPR 169
            +T ++DGTLVAP ++ +      WI F+ ++G+TV GGV+D +G+ LW CK SGK CP 
Sbjct: 80  PVTFRIDGTLVAPADYRVIGNEDYWIFFQHLDGITVYGGVLDARGASLWDCKKSGKNCPS 139

Query: 170 GTT 172
           G T
Sbjct: 140 GAT 141

[Close]

BLAST of MELO3C027277 vs. TAIR 10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 128.3 bits (321), Expect = 6.1e-30
Identity = 64/145 (44.14%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 25  TAFADPITFDILNFGDKLESFAAPITFNVVDFGAKPNNIKIDSSKAFESAWKQACSSSRA 84
           +A   P+ F +L F D   S +A I FNVV FGAKP+ +  DS+ AF  AW+ AC S+ +
Sbjct: 4   SAITFPLIFTLLTFID--VSSSASIVFNVVSFGAKPDGV-TDSTAAFLKAWQGACGSAAS 63

Query: 85  ATIYVPKAKFYIYSATFKGPCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQVNGVTV 144
           AT+ VP   F +   TF GPCK+  IT Q+ GT+VAP ++     S +WI+F +VN  ++
Sbjct: 64  ATVVVPTGTFLLKVITFGGPCKSK-ITFQVTGTVVAPEDYRTFGNSGSWILFNKVNRFSL 123

Query: 145 LGGVIDGQGSELWACKHSGKTCPRG 170
           +GG  D +GS  W+C+ SG+ CP G
Sbjct: 124 VGGTFDARGSGFWSCRKSGQNCPPG 144

[Close]

BLAST of MELO3C027277 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 127.9 bits (320), Expect = 8.0e-30
Identity = 56/123 (45.53%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 50  TFNVVDFGAKPNNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATFKG-PCKNN 109
           T+N++ +GAKP+  K DS+KAF   W +AC+S +  TI VPK +F + S  F G  CK  
Sbjct: 22  TYNILSYGAKPDG-KTDSTKAFTVLWAKACASVKPVTILVPKGRFLLRSIIFDGSKCKRK 81

Query: 110 VITLQMDGTLVAPPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKHSGKTCPR 169
            +T ++ GTLVAP ++ +  +   WI+F+ ++G++V GGV+D QG+ LW+CK SGK CP 
Sbjct: 82  SVTFRIQGTLVAPSDYRVIGKENYWILFQHLDGISVYGGVLDAQGASLWSCKKSGKNCPS 141

Query: 170 GTT 172
           G T
Sbjct: 142 GAT 143

[Close]

BLAST of MELO3C027277 vs. TAIR 10
Match: AT2G43890.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 6.7e-29
Identity = 56/128 (43.75%), Postives = 85/128 (66.41%), Query Frame = 0


Query: 42  LESFAAPITFNVVDFGAKPNNIKIDSSKAFESAWKQACSSSRAATIYVPKAKFYIYSATF 101
           ++S  A   +NVV FGAKP+  + DS+KAF  AW+ AC S+ A T+ VP+  F +    F
Sbjct: 20  MKSSTAASNYNVVSFGAKPDG-RTDSTKAFLGAWQAACRSAAAVTVTVPRGSFLLKPVEF 79

Query: 102 KGPCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIFRQVNGVTVLGGVIDGQGSELWACKH 161
           +GPC++  IT Q+ GT+VAP ++     S  WI+F +VN ++++GG +D +G+  WAC+ 
Sbjct: 80  RGPCRSR-ITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISIIGGTLDARGASFWACRK 139

Query: 162 SGKTCPRG 170
           SGK+CP G
Sbjct: 140 SGKSCPVG 145

[Close]

BLAST of MELO3C027277 vs. TAIR 10
Match: AT2G43860.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 121.3 bits (303), Expect = 7.4e-28
Identity = 65/154 (42.21%), Postives = 95/154 (61.69%), Query Frame = 0


Query: 20  MFFNLTAFADPITFDILNFGDKLESFAAPI--TFNVVDFGAKPNNIKIDSSKAFESAWKQ 79
           M +N +    P+   IL+F   + S A PI  T NV+ +GAKP+  K DS+KAF +AW  
Sbjct: 1   MVYNTSCLILPLALIILDF-TLISSLAHPIPSTLNVLSYGAKPDGSK-DSTKAFLAAWDV 60

Query: 80  ACSSSRAATIYVPKAKFYIYSATFKG-PCKNNVITLQMDGTLVAPPNFHLTAQSKTWIIF 139
           AC+S+   TI VPK +F + +  F G  CK   I++++ G++VAP +F + A SK WI F
Sbjct: 61  ACASANPTTIIVPKGRFLVGNLVFHGNECKQAPISIRIAGSIVAPEDFRIIASSKHWIWF 120

Query: 140 RQVNGVTVLGGVIDGQGSELWACKHS-GKTCPRG 170
             V  V++ GG++D QG+ LW CK++ G  CP G
Sbjct: 121 EDVTDVSIYGGILDAQGTSLWKCKNNGGHNCPTG 152

The following BLAST results are available for this feature:

BLAST of MELO3C027277 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001284460.1	9.0e-92	100.00	polygalacturonase-like precursor [Cucumis melo] >AAC26511.1 polygalacturonase pr...	[more]
KAA0060589.1	1.3e-82	100.00	polygalacturonase-like precursor [Cucumis melo var. makuwa] >TYK02282.1 polygala...	[more]
XP_004133718.1	1.7e-66	79.07	polygalacturonase [Cucumis sativus] >KAE8650186.1 hypothetical protein Csa_01153...	[more]
XP_008448091.1	1.3e-50	60.23	PREDICTED: polygalacturonase-like [Cucumis melo]	[more]
XP_038888717.1	2.5e-49	63.74	polygalacturonase-like [Benincasa hispida]	[more]

BLAST of MELO3C027277 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48979	4.4e-33	49.61	Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1	[more]
O22818	1.0e-26	42.21	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
Q8RY29	2.2e-16	40.00	Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2	[more]
Q9SFB7	5.4e-15	42.02	Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2	[more]
P48978	7.0e-15	39.68	Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1	[more]

BLAST of MELO3C027277 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
O81245	4.3e-92	100.00	Polygalacturonase OS=Cucumis melo OX=3656 GN=MPG2 PE=2 SV=1	[more]
A0A5A7V4D4	6.3e-83	100.00	Polygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A0A0L5E5	2.1e-62	79.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110070 PE=3 SV=1	[more]
A0A1S3BJI1	6.3e-51	60.23	polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103490378 PE=3 SV=1	[more]
A0A0A0K6Z5	2.7e-49	59.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G145950 PE=3 SV=1	[more]

BLAST of MELO3C027277 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43870.1	2.5e-31	48.78	Pectin lyase-like superfamily protein	[more]
AT1G05650.1	6.1e-30	44.14	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	8.0e-30	45.53	Pectin lyase-like superfamily protein	[more]
AT2G43890.1	6.7e-29	43.75	Pectin lyase-like superfamily protein	[more]
AT2G43860.1	7.4e-28	42.21	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 39..170 e-value: 2.6E-24 score: 87.9
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 79..162 e-value: 4.0E-9 score: 36.0
None	No IPR available	PANTHER	PTHR31375:SF206	PUTATIVE-RELATED	coord: 47..169
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 47..169
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 44..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027277.1	MELO3C027277.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity