MELO3C026956 (gene) Melon (DHL92) v4

Overview


Name	MELO3C026956
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr11: 26685879 .. 26688012 (-)
RNA-Seq Expression	MELO3C026956
Synteny	MELO3C026956

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGCTGAACCCCTTGGATCAACAATTTTCATTTTTCCGTATCAGTTCCCATTGTTTTCTCTTTCAAGAACCTCCTCTTCACTTCATTCGCTTATCACTCTCAACCTCGATTCCTTCGGTAACCTCCGCATCTTCTTCTACTTTTCATCTACGGTTTTCTTTCTACTTTACGTTTTTTTTATTCATTCTCGATTCCTTTGGTGTTGCTTTAATTGCCATTTGTTTCATTCGATTTTAATGTTTTTTCGCCCCATGGATAGATTTTATACCTGCTAAATGTATGAATTTCATGATCAATTATGTGGACAAACTAGGCAAATATTTGTAATTTGCGTTAGTTAGCGGAACAAATTGCTGCTTTGTGTTCGAACATCTGTTCTTTTGTATCTGGATTTGCGTATGTGTCCATGGAGATTGAGGCTTAAGTTTCTCAGTTTAAGATTAGCTGCTGAAGTGCTATGATTTTCTAGTACTTGTAGGTTCTTATTTAGCTTTCTTGGTCATTAATTGAGAATGTATCAGGATTTCAGAAGTTGTCATTTCACATAATCCCATCTCATGTTGGGTAGATTAATTATGGAATTTGTTCATTATGATATCCTCGTTGTGTTCACAATATTCTCGAAGTTAGAGTATCTGACACGCTTGTTTCAAATCATTCATATTGAGGTGTGTGGGCGAGAAATTTTGGTTTGATTTCTGTAAAGCATTTCCTGCTTCTTGTCAACTCAAGGTGGTTGGTGGTTCTTGTATGATAAAGTTCTTTGTAGGTTAAGTTTACAGAATATCAATTGCTATCTGCCTTTCCAGTTATACATCTAAATGTTTCTATTCTTTTTCCTTACTGTCTTGGCTCCTGTGTTTTGTTCTTTCCCTTTTCTTTTTAGCTGATGATATGCACTTGAGGCCTTTTTGTTGAACTTTTCAAAATCAAAATAACTGTTATTTATTAAAGCAAAAAAGAGGTAAGCAATCTAGTAAATTTGCCAATTTATTTGTTTTGTTAACTTGCCCATTGTAGAGTTAGGGTCTGTTTGAATCAACTTTTTAATCGCTTAAAAATACTTCTTTTGTATCAACTTTTTAATCGCCTAAACATACTTCCTTTGCACTTATCAACACTTTTTTTTTAGTACCTAAAAACTCAATCCAAATAGACCTTTATATTGCTATTAGTTTTTGACTCCTTGGTATGCAATCAAATCATCTTTTTGGATGCACTCCTGTAGGGGAATATTTAGTAATTCCTGAACTATTTCTTCTGTATCGAGGATTATTCAAACAAGCAAGAACACTATTTCAATGATTAGGGCCATTTATGTGTAGGGGTGGTAGCTCTTTTTCTCTTTCTTGAAGTTATCCAAATTGAATGATGAATTCATTTCTTTGCCTCTTTGGCCAATAAATTAGAATTACCGTGAAAAGTGAGATTAGATTGGATTACTTGGAAATTGTTACTCATTCTGTAGATTTCTTTTCAGTTCTCTCATAGAAAACTTGATGACACGGCGTCGGAATTTGATTGTTGCCGTTGGGCTGATAGCCTTTGCATCTGCTGGATTAGCATTTCCCTTTTACATGGCGTAAGTAAATGACAGTTTCATTCCTTTAATGAATGGATGAATTTGGAGAAGTTAACATTGAAAAGGATTACGATTCAGGTCTTCAAAAAAACCAGTTATAGATCCGACAAAGCCGCTTCCACCACAGGCCACTTTTCGAGGTCCTTATATCAACACTGGCTCCCGAGACGTTGGACCCGACCATCAAACTTACACCAAGAAGTGATTTCTTTTGAATCTTTGCTTCGTTTCCCAAATGTATCTGTTGTTTTATTTCAATGTAGAAGAAGACTGCGTGAATTCTTGTTCTTCTCATTTATGGAGAAACAATAGAGTAGTTCACTTGATATACAAATCAAATCTTTGTAGATTATAGAAATATTGGTGTCTTATAGAGGCATTGGGGTTTTATTTTCATGGATATATATCAATAAACTTAGGATATTAATGTAAATTAATAATATTATTAGATTAACAATTTTTTTTTTACTTTTTATGAAAGTTAGAGATTTGTCAATTGGACAATGGAAACCAAAAGGTTGGTGAATCATATCAAAATAGAGTTTTTCTGA

mRNA sequence

AGGGCTGAACCCCTTGGATCAACAATTTTCATTTTTCCGTATCAGTTCCCATTGTTTTCTCTTTCAAGAACCTCCTCTTCACTTCATTCGCTTATCACTCTCAACCTCGATTCCTTCGTTCTCTCATAGAAAACTTGATGACACGGCGTCGGAATTTGATTGTTGCCGTTGGGCTGATAGCCTTTGCATCTGCTGGATTAGCATTTCCCTTTTACATGGCGTCTTCAAAAAAACCAGTTATAGATCCGACAAAGCCGCTTCCACCACAGGCCACTTTTCGAGGTCCTTATATCAACACTGGCTCCCGAGACGTTGGACCCGACCATCAAACTTACACCAAGAAGTGATTTCTTTTGAATCTTTGCTTCGTTTCCCAAATGTATCTGTTGTTTTATTTCAATGTAGAAGAAGACTGCGTGAATTCTTGTTCTTCTCATTTATGGAGAAACAATAGAGTAGTTCACTTGATATACAAATCAAATCTTTGTAGATTATAGAAATATTGGTGTCTTATAGAGGCATTGGGGTTTTATTTTCATGGATATATATCAATAAACTTAGGATATTAATGTAAATTAATAATATTATTAGATTAACAATTTTTTTTTTACTTTTTATGAAAGTTAGAGATTTGTCAATTGGACAATGGAAACCAAAAGGTTGGTGAATCATATCAAAATAGAGTTTTTCTGA

Coding sequence (CDS)

GGGCTGAACCCCTTGGATCAACAATTTTCATTTTTCCGTATCAGTTCCCATTGTTTTCTCTTTCAAGAACCTCCTCTTCACTTCATTCGCTTATCACTCTCAACCTCGATTCCTTCGTTCTCTCATAGAAAACTTGATGACACGGCGTCGGAATTTGATTGTTGCCGTTGGGCTGATAGCCTTTGCATCTGCTGGATTAGCATTTCCCTTTTACATGGCGTCTTCAAAAAAACCAGTTATAGATCCGACAAAGCCGCTTCCACCACAGGCCACTTTTCGAGGTCCTTATATCAACACTGGCTCCCGAGACGTTGGACCCGACCATCAAACTTACACCAAGAAGTGATTTCTTTTGAATCTTTGCTTCGTTTCCCAAATGTATCTGTTGTTTTATTTCAATGTAGAAGAAGACTGCGTGAATTCTTGTTCTTCTCATTTATGGAGAAACAATAG

Protein sequence

GLNPLDQQFSFFRISSHCFLFQEPPLHFIRLSLSTSIPSFSHRKLDDTASEFDCCRWADSLCICWISISLLHGVFKKTSYRSDKAASTTGHFSRSLYQHWLPRRWTRPSNLHQEVISFESLLRFPNVSVVLFQCRRRLREFLFFSFMEKQ

Homology

[Close]

BLAST of MELO3C026956 vs. NCBI nr
Match: XP_023534104.1 (uncharacterized protein LOC111795764 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-09
Identity = 34/62 (54.84%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 55  CRWADSLCICWISISLLHGVFKKTSYRSDKAASTTGHFSRSLYQHWLPRRWTRPSNLHQE 114
           C W DSLCICW+SISL HG F+K S    K             +HW PRRWTRPSNL +E
Sbjct: 43  CHWIDSLCICWLSISLEHGFFQKASIDPAKPLPPQA-------KHWFPRRWTRPSNLLKE 97

Query: 115 VI 117
           VI
Sbjct: 103 VI 97

[Close]

BLAST of MELO3C026956 vs. NCBI nr
Match: XP_023534103.1 (uncharacterized protein LOC111795764 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-07
Identity = 34/68 (50.00%), Postives = 38/68 (55.88%), Query Frame = 0


Query: 55  CRWADSLCICWISISLLHG------VFKKTSYRSDKAASTTGHFSRSLYQHWLPRRWTRP 114
           C W DSLCICW+SISL HG       F+K S    K             +HW PRRWTRP
Sbjct: 43  CHWIDSLCICWLSISLEHGERFIIQFFQKASIDPAKPLPPQA-------KHWFPRRWTRP 102

Query: 115 SNLHQEVI 117
           SNL +EVI
Sbjct: 103 SNLLKEVI 103

[Close]

BLAST of MELO3C026956 vs. NCBI nr
Match: KCW87453.1 (hypothetical protein EUGRSUZ_B03922 [Eucalyptus grandis])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-05
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 41  SHRKLDDTASEFDCCRWADSLCICWISISLLHGVFKKTSYRSD---KAASTTGHFSRSLY 100
           S   L+D ++++ CC W+ S C C + IS+LHGV   +S   D   KAA T+G+FSR+L+
Sbjct: 48  SSHNLNDPSTQYHCCIWSSSFCCCRLGISILHGVQVVSSESCDRCIKAAPTSGNFSRALH 107

[Close]

BLAST of MELO3C026956 vs. ExPASy TrEMBL
Match: A0A0A0KDG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148310 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 37 IPSFSHRKLDDTASEFDCCRWADSLCICWISISLLHGVFKKTSYRSDK 85
          IPSF+HRKLDDTASEFDCCRWADSLCICWISISLLHGV  +  +RS K
Sbjct: 49 IPSFTHRKLDDTASEFDCCRWADSLCICWISISLLHGV--RLRFRSSK 94

[Close]

BLAST of MELO3C026956 vs. ExPASy TrEMBL
Match: A0A059D9R9 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03922 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 41  SHRKLDDTASEFDCCRWADSLCICWISISLLHGVFKKTSYRSD---KAASTTGHFSRSLY 100
           S   L+D ++++ CC W+ S C C + IS+LHGV   +S   D   KAA T+G+FSR+L+
Sbjct: 48  SSHNLNDPSTQYHCCIWSSSFCCCRLGISILHGVQVVSSESCDRCIKAAPTSGNFSRALH 107

The following BLAST results are available for this feature:

BLAST of MELO3C026956 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C026956 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534104.1	3.7e-09	54.84	uncharacterized protein LOC111795764 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023534103.1	3.5e-07	50.00	uncharacterized protein LOC111795764 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KCW87453.1	5.6e-05	43.55	hypothetical protein EUGRSUZ_B03922 [Eucalyptus grandis]	[more]

BLAST of MELO3C026956 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDG0	2.4e-14	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148310 PE=4 SV=1	[more]
A0A059D9R9	2.7e-05	43.55	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03922 PE=4 SV...	[more]

BLAST of MELO3C026956 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026956.1	MELO3C026956.1	mRNA