MELO3C026864 (gene) Melon (DHL92) v4

Overview


Name	MELO3C026864
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	glycine-rich cell wall structural protein 1.0-like
Location	chr08: 14644895 .. 14645170 (+)
RNA-Seq Expression	MELO3C026864
Synteny	MELO3C026864

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGCGGAGGAAAGAGTGGAGGAGGAGGCGGTGGTGGAAGTAAAGCCGCAGGAGTTGGTGGTGGCGGTGGCGGTGGCGGTAGCGGTAGCGGTGGAGGTGGCAAAGGTGGTAGCGGTGGAGGAAGTTGTGGAAAAGGAGGTGGTGGTGGTGGTCATGGAACTATGGTCGCTCCGGGAACTGGCGGAGCCGTACATATCTCACGTGATGCATTTGAGAGCAATTCAAGAGGTTACTTTCAAGATTTTCGTGCAGCTGAGAAGGGCGGGAAGTAG

mRNA sequence

ATGGCTGGCGGAGGAAAGAGTGGAGGAGGAGGCGGTGGTGGAAGTAAAGCCGCAGGAGTTGGTGGTGGCGGTGGCGGTGGCGGTAGCGGTAGCGGTGGAGGTGGCAAAGGTGGTAGCGGTGGAGGAAGTTGTGGAAAAGGAGGTGGTGGTGGTGGTCATGGAACTATGGTCGCTCCGGGAACTGGCGGAGCCGTACATATCTCACGTGATGCATTTGAGAGCAATTCAAGAGGTTACTTTCAAGATTTTCGTGCAGCTGAGAAGGGCGGGAAGTAG

Coding sequence (CDS)

ATGGCTGGCGGAGGAAAGAGTGGAGGAGGAGGCGGTGGTGGAAGTAAAGCCGCAGGAGTTGGTGGTGGCGGTGGCGGTGGCGGTAGCGGTAGCGGTGGAGGTGGCAAAGGTGGTAGCGGTGGAGGAAGTTGTGGAAAAGGAGGTGGTGGTGGTGGTCATGGAACTATGGTCGCTCCGGGAACTGGCGGAGCCGTACATATCTCACGTGATGCATTTGAGAGCAATTCAAGAGGTTACTTTCAAGATTTTCGTGCAGCTGAGAAGGGCGGGAAGTAG

Protein sequence

MAGGGKSGGGGGGGSKAAGVGGGGGGGGSGSGGGGKGGSGGGSCGKGGGGGGHGTMVAPGTGGAVHISRDAFESNSRGYFQDFRAAEKGGK

Homology

[Close]

BLAST of MELO3C026864 vs. NCBI nr
Match: XP_008465297.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 7.7e-26
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MAGGGKSGGGGGGGSKAAGVGGGGGGGGSGSGGGGKGGSGGGSCGKGGGGGGHGTMVAPG 60
          MAGGGKSGGGGGGGSKAAGVGGGGGGGGSGSGGGGKGGSGGGSCGKGGGGGGHGTMVAPG
Sbjct: 1  MAGGGKSGGGGGGGSKAAGVGGGGGGGGSGSGGGGKGGSGGGSCGKGGGGGGHGTMVAPG 60

Query: 61 TGGAVHISRDAFESNSRGYFQDFRAAEKGGK 92
          TGGAVHISRDAFESNSRGYFQDFRAAEKGGK
Sbjct: 61 TGGAVHISRDAFESNSRGYFQDFRAAEKGGK 91

[Close]

BLAST of MELO3C026864 vs. NCBI nr
Match: XP_021734048.1 (glycine-rich cell wall structural protein 1.0 [Chenopodium quinoa])

HSP 1 Score: 58.9 bits (141), Expect = 2.6e-05
Identity = 63/89 (70.79%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 3  GGGKSGGGGGGGSKAAGVGGGGGGGGSGSGGGGKGGSGGGSCGKGGGGGGHGTMVAPGTG 62
          GGGK GGGGGGG    G GGGGGGGG   GGGGKGGSGGGS  KGGGG G G MVAPG+G
Sbjct: 16 GGGKGGGGGGGG---GGKGGGGGGGGRSGGGGGKGGSGGGS--KGGGGSGGGYMVAPGSG 75

Query: 63 GAVHISRDAFESNSRGYFQDFRAAEKGGK 92
          G+ +ISR AFESN  GYF  F+A EKG K
Sbjct: 76 GSSYISRGAFESNPGGYFSGFQAGEKGSK 99

[Close]

BLAST of MELO3C026864 vs. ExPASy TrEMBL
Match: A0A1S3CQ14 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103502951 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MAGGGKSGGGGGGGSKAAGVGGGGGGGGSGSGGGGKGGSGGGSCGKGGGGGGHGTMVAPG 60
          MAGGGKSGGGGGGGSKAAGVGGGGGGGGSGSGGGGKGGSGGGSCGKGGGGGGHGTMVAPG
Sbjct: 1  MAGGGKSGGGGGGGSKAAGVGGGGGGGGSGSGGGGKGGSGGGSCGKGGGGGGHGTMVAPG 60

Query: 61 TGGAVHISRDAFESNSRGYFQDFRAAEKGGK 92
          TGGAVHISRDAFESNSRGYFQDFRAAEKGGK
Sbjct: 61 TGGAVHISRDAFESNSRGYFQDFRAAEKGGK 91

The following BLAST results are available for this feature:

BLAST of MELO3C026864 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465297.1	7.7e-26	100.00	PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo]	[more]
XP_021734048.1	2.6e-05	70.79	glycine-rich cell wall structural protein 1.0 [Chenopodium quinoa]	[more]

BLAST of MELO3C026864 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C026864 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CQ14	3.8e-26	100.00	glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of MELO3C026864 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026864.1	MELO3C026864.1	mRNA