MELO3C026813 (gene) Melon (DHL92) v4

Overview


Name	MELO3C026813
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RNA-dependent RNA polymerase
Location	chr10: 14178975 .. 14179237 (-)
RNA-Seq Expression	MELO3C026813
Synteny	MELO3C026813

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAATGTATTCAACTGAGTTGTCTCCACGTACATCTTCATCTTTGGAGGATCGAAAGATGAAAATCTTTAAACGGATTCTTTCAATTCTAAGAGATGGCATCACCATTGGTGATAAGATGTTTGAGTTTCTAGCTTATTCATCTAGTCAATTACGGGAAAAAGAAGACGGCAGCAGTCGTGTGGATGAGAAGGAGGAAGAAAACGCTGACAAATGGTGGTTGTCCGAGAAGGCGATACGAAAAGCGGGAGAGTTGTCGTGA

mRNA sequence

GTAAAATGTATTCAACTGAGTTGTCTCCACGTACATCTTCATCTTTGGAGGATCGAAAGATGAAAATCTTTAAACGGATTCTTTCAATTCTAAGAGATGGCATCACCATTGGTGATAAGATGTTTGAGTTTCTAGCTTATTCATCTAGTCAATTACGGGAAAAAGAAGACGGCAGCAGTCGTGTGGATGAGAAGGAGGAAGAAAACGCTGACAAATGGTGGTTGTCCGAGAAGGCGATACGAAAAGCGGGAGAGTTGTCGTGA

Coding sequence (CDS)

ATGTATTCAACTGAGTTGTCTCCACGTACATCTTCATCTTTGGAGGATCGAAAGATGAAAATCTTTAAACGGATTCTTTCAATTCTAAGAGATGGCATCACCATTGGTGATAAGATGTTTGAGTTTCTAGCTTATTCATCTAGTCAATTACGGGAAAAAGAAGACGGCAGCAGTCGTGTGGATGAGAAGGAGGAAGAAAACGCTGACAAATGGTGGTTGTCCGAGAAGGCGATACGAAAAGCGGGAGAGTTGTCGTGA

Protein sequence

MYSTELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLREKEDGSSRVDEKEEENADKWWLSEKAIRKAGELS

Homology

[Close]

BLAST of MELO3C026813 vs. NCBI nr
Match: ALM88234.1 (RNA-dependent RNA polymerase 1b [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-15
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MYSTELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLRE 53
           MYSTELSPR SSSLED K KIFKRILS+LRDGITIGDK FEFLAYSSSQLRE
Sbjct: 413 MYSTELSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRE 464

[Close]

BLAST of MELO3C026813 vs. NCBI nr
Match: NP_001267682.1 (RNA-dependent RNA polymerase 1-like [Cucumis sativus] >XP_011654424.1 RNA-dependent RNA polymerase 1-like isoform X1 [Cucumis sativus] >ADU77016.1 RNA-dependent RNA polymerase 1b [Cucumis sativus] >KGN50762.1 hypothetical protein Csa_005874 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-15
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MYSTELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLRE 53
           MYSTELSPR SSSLED K KIFKRILS+LRDGITIGDK FEFLAYSSSQLRE
Sbjct: 413 MYSTELSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRE 464

[Close]

BLAST of MELO3C026813 vs. NCBI nr
Match: XP_038877939.1 (RNA-dependent RNA polymerase 1-like isoform X2 [Benincasa hispida] >XP_038877940.1 RNA-dependent RNA polymerase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-15
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MYSTELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLRE 53
           MYSTELSPR SSSLED K KIFKRILS+LRDGITIGDK FEFLAYSSSQLRE
Sbjct: 214 MYSTELSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRE 265

[Close]

BLAST of MELO3C026813 vs. NCBI nr
Match: XP_038877934.1 (RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877936.1 RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877937.1 RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877938.1 RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-15
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MYSTELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLRE 53
           MYSTELSPR SSSLED K KIFKRILS+LRDGITIGDK FEFLAYSSSQLRE
Sbjct: 413 MYSTELSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRE 464

[Close]

BLAST of MELO3C026813 vs. NCBI nr
Match: XP_022146790.1 (RNA-dependent RNA polymerase 1-like [Momordica charantia] >XP_022146791.1 RNA-dependent RNA polymerase 1-like [Momordica charantia] >XP_022146792.1 RNA-dependent RNA polymerase 1-like [Momordica charantia] >XP_022146793.1 RNA-dependent RNA polymerase 1-like [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 9.8e-15
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MYSTELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLRE 53
           +YSTELSPR SSSLED K KIFKRILS+LRDGITIGDK FEFLAYSSSQLRE
Sbjct: 415 LYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRE 466

[Close]

BLAST of MELO3C026813 vs. ExPASy Swiss-Prot
Match: Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-09
Identity = 29/50 (58.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 3  STELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLRE 53
          +T+LSPR++S  +  +  ++KR+LS+L DGITIG K FEFLA+SSSQLR+
Sbjct: 48 ATDLSPRSASGHDANRTALYKRVLSVLSDGITIGGKNFEFLAFSSSQLRD 97

[Close]

BLAST of MELO3C026813 vs. ExPASy Swiss-Prot
Match: Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-09
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 3   STELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLRE 53
           S +LSPR+S+    R+ K++ RI S+LRDGI IGDK FEFLA+SSSQLRE
Sbjct: 416 SMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRE 462

[Close]

BLAST of MELO3C026813 vs. ExPASy Swiss-Prot
Match: O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.2e-04
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 18  KMKIFKRILSILRDGITIGDKMFEFLAYSSSQLREKEDGSSRVDEKEEENADKWWL 74
           +  I+ R+LSIL +GIT+G K FEFLA+S+SQLR         +EK +    + W+
Sbjct: 447 RTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWM 502

[Close]

BLAST of MELO3C026813 vs. ExPASy TrEMBL
Match: E9NWK7 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239640 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-15
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MYSTELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLRE 53
           MYSTELSPR SSSLED K KIFKRILS+LRDGITIGDK FEFLAYSSSQLRE
Sbjct: 413 MYSTELSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRE 464

[Close]

BLAST of MELO3C026813 vs. ExPASy TrEMBL
Match: A0A0S1YCZ7 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1b PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-15
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MYSTELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLRE 53
           MYSTELSPR SSSLED K KIFKRILS+LRDGITIGDK FEFLAYSSSQLRE
Sbjct: 413 MYSTELSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRE 464

[Close]

BLAST of MELO3C026813 vs. ExPASy TrEMBL
Match: A0A6J1D0F4 (RNA-dependent RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111015912 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.7e-15
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MYSTELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLRE 53
           +YSTELSPR SSSLED K KIFKRILS+LRDGITIGDK FEFLAYSSSQLRE
Sbjct: 415 LYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRE 466

[Close]

BLAST of MELO3C026813 vs. ExPASy TrEMBL
Match: H3K3Y9 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.1e-15
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   MYSTELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLRE 53
           MYSTELSPR SSSLED K KI KRILS+LRDGITIGDK FEFLAYSSSQLRE
Sbjct: 413 MYSTELSPRASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLRE 464

[Close]

BLAST of MELO3C026813 vs. ExPASy TrEMBL
Match: A0A6J1FR02 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111447986 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MYSTELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLRE 53
           +YSTELSPR SSSLED K KIFKRILS+L+DGITIGDK FEFLAYSSSQLRE
Sbjct: 413 LYSTELSPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRE 464

[Close]

BLAST of MELO3C026813 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 )

HSP 1 Score: 62.0 bits (149), Expect = 2.7e-10
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 3   STELSPRTSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLRE 53
           S +LSPR+S+    R+ K++ RI S+LRDGI IGDK FEFLA+SSSQLRE
Sbjct: 416 SMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRE 462

[Close]

BLAST of MELO3C026813 vs. TAIR 10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2 )

HSP 1 Score: 44.7 bits (104), Expect = 4.4e-05
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 18  KMKIFKRILSILRDGITIGDKMFEFLAYSSSQLREKEDGSSRVDEKEEENADKWWL 74
           +  I+ R+LSIL +GIT+G K FEFLA+S+SQLR         +EK +    + W+
Sbjct: 447 RTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWM 502

[Close]

BLAST of MELO3C026813 vs. TAIR 10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6 )

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 10  TSSSLEDRKMKIFKRILSILRDGITIGDKMFEFLAYSSSQLREK------EDGSSRVDE 63
           TSSS   +K  +FKR+ SIL DG  +  + + FLA+S++QLR++      EDG +RV +
Sbjct: 475 TSSSF-SQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSD 532

The following BLAST results are available for this feature:

BLAST of MELO3C026813 vs. NCBI nr


Match Name	E-value	Identity	Description
ALM88234.1	3.4e-15	90.38	RNA-dependent RNA polymerase 1b [Cucumis sativus]	[more]
NP_001267682.1	3.4e-15	90.38	RNA-dependent RNA polymerase 1-like [Cucumis sativus] >XP_011654424.1 RNA-depend...	[more]
XP_038877939.1	3.4e-15	90.38	RNA-dependent RNA polymerase 1-like isoform X2 [Benincasa hispida] >XP_038877940...	[more]
XP_038877934.1	3.4e-15	90.38	RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877936...	[more]
XP_022146790.1	9.8e-15	88.46	RNA-dependent RNA polymerase 1-like [Momordica charantia] >XP_022146791.1 RNA-de...	[more]

BLAST of MELO3C026813 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0DXS3	2.9e-09	58.00	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q9LQV2	3.7e-09	64.00	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1	[more]
O82504	6.2e-04	42.86	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1	[more]

BLAST of MELO3C026813 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E9NWK7	1.6e-15	90.38	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239640 PE=2 SV=...	[more]
A0A0S1YCZ7	1.6e-15	90.38	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1b PE=2 SV=1	[more]
A0A6J1D0F4	4.7e-15	88.46	RNA-dependent RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111015912 PE=3...	[more]
H3K3Y9	8.1e-15	88.46	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1 PE=2 SV=1	[more]
A0A6J1FR02	1.1e-14	86.54	RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111447986 PE=3 ...	[more]

BLAST of MELO3C026813 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14790.1	2.7e-10	64.00	RNA-dependent RNA polymerase 1	[more]
AT4G11130.1	4.4e-05	42.86	RNA-dependent RNA polymerase 2	[more]
AT3G49500.1	1.3e-04	42.37	RNA-dependent RNA polymerase 6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 15..55 e-value: 1.3E-6 score: 27.3
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 1..53
None	No IPR available	PANTHER	PTHR23079:SF38	RNA-DEPENDENT RNA POLYMERASE	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026813.1	MELO3C026813.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003968	RNA-directed 5'-3' RNA polymerase activity