MELO3C026442.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C026442.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr10: 24576262 .. 24576414 (+)
RNA-Seq ExpressionMELO3C026442.jh1
SyntenyMELO3C026442.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGCCCGTGCAAAGACTTTTGCTGATATCGAGTCGAATGTGCTAGACAAAAGCGATAGAGTTCAAGCAGAAGATGGGCTGGATATCGAGTTCCCCACTATGTGCAGCCCAATGACCAGTTTAGGGTCATCGCGAAATGACCGACGATAG

mRNA sequence

ATGGGGGCCCGTGCAAAGACTTTTGCTGATATCGAGTCGAATGTGCTAGACAAAAGCGATAGAGTTCAAGCAGAAGATGGGCTGGATATCGAGTTCCCCACTATGTGCAGCCCAATGACCAGTTTAGGGTCATCGCGAAATGACCGACGATAG

Coding sequence (CDS)

ATGGGGGCCCGTGCAAAGACTTTTGCTGATATCGAGTCGAATGTGCTAGACAAAAGCGATAGAGTTCAAGCAGAAGATGGGCTGGATATCGAGTTCCCCACTATGTGCAGCCCAATGACCAGTTTAGGGTCATCGCGAAATGACCGACGATAG

Protein sequence

MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
Homology
[Close]
BLAST of MELO3C026442.jh1 vs. NCBI nr
Match: KAA0040975.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 3.26e-25
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1   MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR 50
           MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
Sbjct: 157 MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR 206

[Close]
BLAST of MELO3C026442.jh1 vs. NCBI nr
Match: TYK20324.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 6.85e-25
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1   MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR 50
           MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
Sbjct: 190 MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR 239

[Close]
BLAST of MELO3C026442.jh1 vs. NCBI nr
Match: KAA0037992.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 8.66e-08
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 2   GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCS 37
           GA A+TFADIESNVL  S  +Q EDGLD+EFPTMCS
Sbjct: 160 GAHAETFADIESNVLGGSKGIQLEDGLDMEFPTMCS 195

[Close]
BLAST of MELO3C026442.jh1 vs. NCBI nr
Match: KAA0037842.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK27221.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.4 bits (124), Expect = 2.01e-06
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 2   GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSL 42
           GARA+TFADI  NV   +D + AEDG+  EFPTMCSP  ++
Sbjct: 63  GARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPRMNM 103

[Close]
BLAST of MELO3C026442.jh1 vs. NCBI nr
Match: TYK23236.1 (hypothetical protein E5676_scaffold142G002800 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 3.69e-06
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 2   GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSL 42
           GA A TFADI  N+   SD VQ +DGLD+EFP MCSP  S+
Sbjct: 60  GAHAVTFADIGLNMSGLSDDVQPKDGLDMEFPNMCSPEMSM 100

[Close]
BLAST of MELO3C026442.jh1 vs. ExPASy TrEMBL
Match: A0A5A7THV4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G001780 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 1.58e-25
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1   MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR 50
           MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
Sbjct: 157 MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR 206

[Close]
BLAST of MELO3C026442.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D9Y6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold228G00060 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 3.31e-25
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1   MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR 50
           MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
Sbjct: 190 MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR 239

[Close]
BLAST of MELO3C026442.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T3D0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001790 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.20e-08
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 2   GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCS 37
           GA A+TFADIESNVL  S  +Q EDGLD+EFPTMCS
Sbjct: 160 GAHAETFADIESNVLGGSKGIQLEDGLDMEFPTMCS 195

[Close]
BLAST of MELO3C026442.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T2Z5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00970 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.73e-07
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 2   GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSL 42
           GARA+TFADI  NV   +D + AEDG+  EFPTMCSP  ++
Sbjct: 63  GARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPRMNM 103

[Close]
BLAST of MELO3C026442.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DHY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002800 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.79e-06
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 2   GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSL 42
           GA A TFADI  N+   SD VQ +DGLD+EFP MCSP  S+
Sbjct: 60  GAHAVTFADIGLNMSGLSDDVQPKDGLDMEFPNMCSPEMSM 100

The following BLAST results are available for this feature:
BLAST of MELO3C026442.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040975.13.26e-25100.00retrotransposon protein [Cucumis melo var. makuwa][more]
TYK20324.16.85e-25100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0037992.18.66e-0875.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0037842.12.01e-0658.54retrotransposon protein [Cucumis melo var. makuwa] >TYK27221.1 retrotransposon p... [more]
TYK23236.13.69e-0660.98hypothetical protein E5676_scaffold142G002800 [Cucumis melo var. makuwa][more]
BLAST of MELO3C026442.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C026442.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7THV41.58e-25100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D9Y63.31e-25100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T3D04.20e-0875.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T2Z59.73e-0758.54Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DHY01.79e-0660.98Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C026442.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026442.jh1.t1MELO3C026442.jh1.t1mRNA