MELO3C025868 (gene) Melon (DHL92) v4

Overview


Name	MELO3C025868
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Peptidyl-prolyl cis-trans isomerase
Location	chr11: 20446546 .. 20446856 (-)
RNA-Seq Expression	MELO3C025868
Synteny	MELO3C025868

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACATTGGTATTCTTTTCTTTGCTTTTAGGTACCTCCTTTACAAGAGAAAGTTGCAAACAAGGTGTATTTTGATGTTAGTATTGGTAATCCAGTAGGGAAGCTTGCTGGGAGGATTGTGATTGATGTCCCCAAAACGGCAGAGAATTTCCGTGCTCTTTGCACAGGTATTATATCTAATCTATCATGAGACGACTTTACCTCTTACACATGGAAATTCAAGTCAGCTCTGGATGTTATTAACTTTACTAACCTTATTAGGAGAGAAGGGCTTTGGATTCAAAGGTTCTACACCTTTCATCGTGTAA

mRNA sequence

ATGGCGACATTGGTACCTCCTTTACAAGAGAAAGTTGCAAACAAGGTGTATTTTGATGTTAGTATTGGTAATCCAGTAGGGAAGCTTGCTGGGAGGATTGTGATTGATGTCCCCAAAACGGCAGAGAATTTCCGTGCTCTTTGCACAGGAGAGAAGGGCTTTGGATTCAAAGGTTCTACACCTTTCATCGTGTAA

Coding sequence (CDS)

ATGGCGACATTGGTACCTCCTTTACAAGAGAAAGTTGCAAACAAGGTGTATTTTGATGTTAGTATTGGTAATCCAGTAGGGAAGCTTGCTGGGAGGATTGTGATTGATGTCCCCAAAACGGCAGAGAATTTCCGTGCTCTTTGCACAGGAGAGAAGGGCTTTGGATTCAAAGGTTCTACACCTTTCATCGTGTAA

Protein sequence

MATLVPPLQEKVANKVYFDVSIGNPVGKLAGRIVIDVPKTAENFRALCTGEKGFGFKGSTPFIV

Homology

[Close]

BLAST of MELO3C025868 vs. ExPASy Swiss-Prot
Match: Q9ASS6 (Photosynthetic NDH subunit of lumenal location 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL5 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.1e-19
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 2   ATLVPPLQEKVANKVYFDVSIGNPVGKLAGRIVI-----DVPKTAENFRALCTGEKGFGF 61
           A +V   Q K+ +KVYFD+S+GNPVGKLAGRIVI     DVP+T ENFRALCTGEKGFG+
Sbjct: 78  AEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGY 137

[Close]

BLAST of MELO3C025868 vs. ExPASy Swiss-Prot
Match: P34791 (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-12
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 9   QEKVANKVYFDVSIGNPVGKLAGRIVID-----VPKTAENFRALCTGEKGFGFKGST 61
           Q KV NKVYFDV IG   G++AGRIV+      VPKT ENFRALCTGEK +G+KGS+
Sbjct: 90  QAKVTNKVYFDVEIG---GEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSS 143

[Close]

BLAST of MELO3C025868 vs. ExPASy Swiss-Prot
Match: P14088 (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus OX=6210 GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 3.9e-11
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 15 KVYFDVSIGNPVGKLAGRIVI----DVPKTAENFRALCTGEKGFGFKGS 60
          K +FD+SIG   GK AGRIV     DVPKT ENFRALCTGEKGFG+KGS
Sbjct: 4  KCFFDISIG---GKPAGRIVFALFDDVPKTVENFRALCTGEKGFGYKGS 49

[Close]

BLAST of MELO3C025868 vs. ExPASy Swiss-Prot
Match: P14832 (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CPR1 PE=1 SV=3)

HSP 1 Score: 63.5 bits (153), Expect = 9.7e-10
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 14 NKVYFDVSI-GNPVGKLAGRIVID-VPKTAENFRALCTGEKGFGFKGSTPF 63
          ++VYFDV   G P+G++  ++  D VPKTAENFRALCTGEKGFG+ GS PF
Sbjct: 2  SQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGS-PF 51

[Close]

BLAST of MELO3C025868 vs. ExPASy Swiss-Prot
Match: P54985 (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica OX=6973 GN=CYPA PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.7e-10
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 15 KVYFDVSI-GNPVGKLAGRIVID-VPKTAENFRALCTGEKGFGFKGS 60
          +V+FD+S  G PVG++   +  D VPKTAENFRALCTGEKGFG+KGS
Sbjct: 5  RVFFDMSADGQPVGRIVMELRSDVVPKTAENFRALCTGEKGFGYKGS 51

[Close]

BLAST of MELO3C025868 vs. NCBI nr
Match: KAA0061849.1 (photosynthetic NDH subunit of lumenal location 5 [Cucumis melo var. makuwa] >TYK15407.1 photosynthetic NDH subunit of lumenal location 5 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 5   VPPLQEKVANKVYFDVSIGNPVGKLAGRIVIDVPKTAENFRALCTGEKGFGFKGSTPFIV 64
           VPPLQEKVANKVYFDVSIGNPVGKLAGRIVIDVPKTAENFRALCTGEKGFGFKGSTPFIV
Sbjct: 71  VPPLQEKVANKVYFDVSIGNPVGKLAGRIVIDVPKTAENFRALCTGEKGFGFKGSTPFIV 130

[Close]

BLAST of MELO3C025868 vs. NCBI nr
Match: XP_004140542.1 (photosynthetic NDH subunit of lumenal location 5, chloroplastic [Cucumis sativus] >KGN46438.1 hypothetical protein Csa_005347 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 53/60 (88.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 5   VPPLQEKVANKVYFDVSIGNPVGKLAGRIVI-----DVPKTAENFRALCTGEKGFGFKGS 60
           VPPLQ KV NKVYFDVSIGNPVGKLAGRIVI     DVPKTAENFRALCTGEKGFGFKGS
Sbjct: 74  VPPLQAKVTNKVYFDVSIGNPVGKLAGRIVIGLFGDDVPKTAENFRALCTGEKGFGFKGS 133

[Close]

BLAST of MELO3C025868 vs. NCBI nr
Match: XP_008459881.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic [Cucumis melo] >KAA0039834.1 photosynthetic NDH subunit of lumenal location 5 [Cucumis melo var. makuwa] >TYK24665.1 photosynthetic NDH subunit of lumenal location 5 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 53/60 (88.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 5   VPPLQEKVANKVYFDVSIGNPVGKLAGRIVI-----DVPKTAENFRALCTGEKGFGFKGS 60
           VPPLQ KV NKVYFDVSIGNPVGKLAGRIVI     DVPKTAENFRALCTGEKGFGFKGS
Sbjct: 74  VPPLQAKVTNKVYFDVSIGNPVGKLAGRIVIGLFGDDVPKTAENFRALCTGEKGFGFKGS 133

[Close]

BLAST of MELO3C025868 vs. NCBI nr
Match: XP_038875935.1 (photosynthetic NDH subunit of lumenal location 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 53/60 (88.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 5   VPPLQEKVANKVYFDVSIGNPVGKLAGRIVI-----DVPKTAENFRALCTGEKGFGFKGS 60
           VPPLQ KV NKVYFDVSIGNPVGKLAGRIVI     DVPKTAENFRALCTGEKGFGFKGS
Sbjct: 82  VPPLQAKVTNKVYFDVSIGNPVGKLAGRIVIGLFGDDVPKTAENFRALCTGEKGFGFKGS 141

[Close]

BLAST of MELO3C025868 vs. NCBI nr
Match: XP_010090669.1 (photosynthetic NDH subunit of lumenal location 5, chloroplastic [Morus notabilis] >EXB40333.1 Peptidyl-prolyl cis-trans isomerase CYP20-2 [Morus notabilis])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 5   VPPLQEKVANKVYFDVSIGNPVGKLAGRIVI-----DVPKTAENFRALCTGEKGFGFKGS 61
           V PLQ KV NKVYFD+SIGNPVGKLAGRIVI     DVP+TAENFRALCTGEKGFG+KGS
Sbjct: 85  VAPLQSKVTNKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGS 144

[Close]

BLAST of MELO3C025868 vs. ExPASy TrEMBL
Match: A0A5D3CTY6 (Photosynthetic NDH subunit of lumenal location 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00500 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 5   VPPLQEKVANKVYFDVSIGNPVGKLAGRIVIDVPKTAENFRALCTGEKGFGFKGSTPFIV 64
           VPPLQEKVANKVYFDVSIGNPVGKLAGRIVIDVPKTAENFRALCTGEKGFGFKGSTPFIV
Sbjct: 71  VPPLQEKVANKVYFDVSIGNPVGKLAGRIVIDVPKTAENFRALCTGEKGFGFKGSTPFIV 130

[Close]

BLAST of MELO3C025868 vs. ExPASy TrEMBL
Match: A0A5D3DM20 (Peptidyl-prolyl cis-trans isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002150 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.7e-20
Identity = 53/60 (88.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 5   VPPLQEKVANKVYFDVSIGNPVGKLAGRIVI-----DVPKTAENFRALCTGEKGFGFKGS 60
           VPPLQ KV NKVYFDVSIGNPVGKLAGRIVI     DVPKTAENFRALCTGEKGFGFKGS
Sbjct: 74  VPPLQAKVTNKVYFDVSIGNPVGKLAGRIVIGLFGDDVPKTAENFRALCTGEKGFGFKGS 133

[Close]

BLAST of MELO3C025868 vs. ExPASy TrEMBL
Match: A0A0A0KAE0 (Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus OX=3659 GN=Csa_6G093090 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.7e-20
Identity = 53/60 (88.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 5   VPPLQEKVANKVYFDVSIGNPVGKLAGRIVI-----DVPKTAENFRALCTGEKGFGFKGS 60
           VPPLQ KV NKVYFDVSIGNPVGKLAGRIVI     DVPKTAENFRALCTGEKGFGFKGS
Sbjct: 74  VPPLQAKVTNKVYFDVSIGNPVGKLAGRIVIGLFGDDVPKTAENFRALCTGEKGFGFKGS 133

[Close]

BLAST of MELO3C025868 vs. ExPASy TrEMBL
Match: A0A1S3CBN7 (Peptidyl-prolyl cis-trans isomerase OS=Cucumis melo OX=3656 GN=LOC103498867 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.7e-20
Identity = 53/60 (88.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 5   VPPLQEKVANKVYFDVSIGNPVGKLAGRIVI-----DVPKTAENFRALCTGEKGFGFKGS 60
           VPPLQ KV NKVYFDVSIGNPVGKLAGRIVI     DVPKTAENFRALCTGEKGFGFKGS
Sbjct: 74  VPPLQAKVTNKVYFDVSIGNPVGKLAGRIVIGLFGDDVPKTAENFRALCTGEKGFGFKGS 133

[Close]

BLAST of MELO3C025868 vs. ExPASy TrEMBL
Match: W9QW97 (Peptidyl-prolyl cis-trans isomerase OS=Morus notabilis OX=981085 GN=L484_017475 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.3e-19
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 5   VPPLQEKVANKVYFDVSIGNPVGKLAGRIVI-----DVPKTAENFRALCTGEKGFGFKGS 61
           V PLQ KV NKVYFD+SIGNPVGKLAGRIVI     DVP+TAENFRALCTGEKGFG+KGS
Sbjct: 85  VAPLQSKVTNKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGS 144

[Close]

BLAST of MELO3C025868 vs. TAIR 10
Match: AT5G13120.1 (cyclophilin 20-2 )

HSP 1 Score: 94.4 bits (233), Expect = 3.6e-20
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 2   ATLVPPLQEKVANKVYFDVSIGNPVGKLAGRIVI-----DVPKTAENFRALCTGEKGFGF 61
           A +V   Q K+ +KVYFD+S+GNPVGKLAGRIVI     DVP+T ENFRALCTGEKGFG+
Sbjct: 78  AEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGY 137

[Close]

BLAST of MELO3C025868 vs. TAIR 10
Match: AT5G13120.2 (cyclophilin 20-2 )

HSP 1 Score: 94.4 bits (233), Expect = 3.6e-20
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 2   ATLVPPLQEKVANKVYFDVSIGNPVGKLAGRIVI-----DVPKTAENFRALCTGEKGFGF 61
           A +V   Q K+ +KVYFD+S+GNPVGKLAGRIVI     DVP+T ENFRALCTGEKGFG+
Sbjct: 74  AEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGY 133

[Close]

BLAST of MELO3C025868 vs. TAIR 10
Match: AT3G62030.1 (rotamase CYP 4 )

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-13
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 9   QEKVANKVYFDVSIGNPVGKLAGRIVID-----VPKTAENFRALCTGEKGFGFKGST 61
           Q KV NKVYFDV IG   G++AGRIV+      VPKT ENFRALCTGEK +G+KGS+
Sbjct: 90  QAKVTNKVYFDVEIG---GEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSS 143

[Close]

BLAST of MELO3C025868 vs. TAIR 10
Match: AT3G62030.2 (rotamase CYP 4 )

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-13
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 9   QEKVANKVYFDVSIGNPVGKLAGRIVID-----VPKTAENFRALCTGEKGFGFKGST 61
           Q KV NKVYFDV IG   G++AGRIV+      VPKT ENFRALCTGEK +G+KGS+
Sbjct: 143 QAKVTNKVYFDVEIG---GEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSS 196

[Close]

BLAST of MELO3C025868 vs. TAIR 10
Match: AT3G62030.3 (rotamase CYP 4 )

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-13
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 9   QEKVANKVYFDVSIGNPVGKLAGRIVID-----VPKTAENFRALCTGEKGFGFKGST 61
           Q KV NKVYFDV IG   G++AGRIV+      VPKT ENFRALCTGEK +G+KGS+
Sbjct: 89  QAKVTNKVYFDVEIG---GEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSS 142

The following BLAST results are available for this feature:

BLAST of MELO3C025868 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ASS6	5.1e-19	70.31	Photosynthetic NDH subunit of lumenal location 5, chloroplastic OS=Arabidopsis t...	[more]
P34791	2.7e-12	64.91	Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thalia...	[more]
P14088	3.9e-11	71.43	Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus OX=6210 GN=CYP-1 ...	[more]
P14832	9.7e-10	62.75	Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae (strain ATCC 204...	[more]
P54985	9.7e-10	65.96	Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica OX=6973 GN=CYPA PE=2 ...	[more]

BLAST of MELO3C025868 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061849.1	5.4e-26	100.00	photosynthetic NDH subunit of lumenal location 5 [Cucumis melo var. makuwa] >TYK...	[more]
XP_004140542.1	7.6e-20	88.33	photosynthetic NDH subunit of lumenal location 5, chloroplastic [Cucumis sativus...	[more]
XP_008459881.1	7.6e-20	88.33	PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic [Cucu...	[more]
XP_038875935.1	7.6e-20	88.33	photosynthetic NDH subunit of lumenal location 5, chloroplastic [Benincasa hispi...	[more]
XP_010090669.1	1.1e-18	81.97	photosynthetic NDH subunit of lumenal location 5, chloroplastic [Morus notabilis...	[more]

BLAST of MELO3C025868 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTY6	2.6e-26	100.00	Photosynthetic NDH subunit of lumenal location 5 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3DM20	3.7e-20	88.33	Peptidyl-prolyl cis-trans isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0KAE0	3.7e-20	88.33	Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus OX=3659 GN=Csa_6G093090 P...	[more]
A0A1S3CBN7	3.7e-20	88.33	Peptidyl-prolyl cis-trans isomerase OS=Cucumis melo OX=3656 GN=LOC103498867 PE=3...	[more]
W9QW97	5.3e-19	81.97	Peptidyl-prolyl cis-trans isomerase OS=Morus notabilis OX=981085 GN=L484_017475 ...	[more]

BLAST of MELO3C025868 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13120.1	3.6e-20	70.31	cyclophilin 20-2	[more]
AT5G13120.2	3.6e-20	70.31	cyclophilin 20-2	[more]
AT3G62030.1	1.9e-13	64.91	rotamase CYP 4	[more]
AT3G62030.2	1.9e-13	64.91	rotamase CYP 4	[more]
AT3G62030.3	1.9e-13	64.91	rotamase CYP 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029000	Cyclophilin-like domain superfamily	GENE3D	2.40.100.10		coord: 5..63 e-value: 7.8E-11 score: 43.9
IPR029000	Cyclophilin-like domain superfamily	SUPERFAMILY	50891	Cyclophilin-like	coord: 4..58
None	No IPR available	PANTHER	PTHR11071	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 8..60
None	No IPR available	PANTHER	PTHR11071:SF420	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC	coord: 8..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025868.1	MELO3C025868.1	mRNA