MELO3C025865 (gene) Melon (DHL92) v4

Overview


Name	MELO3C025865
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Thylakoid soluble phosphoprotein TSP
Location	chr11: 20452476 .. 20453182 (-)
RNA-Seq Expression	MELO3C025865
Synteny	MELO3C025865

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGGACTTTGAATCAAAGGGATAAGGCGCCTGTGGTGAGCTCGCGCTTCACATCACTCCATCGCCTCTTATTTTACCCAAATATCCTCTTCCCAATTTCATTCCATTTTTCCAATTAAAAAAACAACATTATGGCCTCTCTTCCAATTGCATTCTCTCCCGCCGCCGGACGCGTATTCGCAGCCACCGCGGCCAAAGGCGCCGGCGAAAGCAAGAAAGAAAAGGGCCTTCTTGATTGGATCATCGGCAGCTTGAATAAGGATCAGCTTCTTGAAACCGACCCTGTTCTTCAAAAAGTCGAAGGCAAGGACGGTACCTCCGGTAACGGCACCGGCACCGTCCGCGGCCGAAAGAATTCCGTCCAAATCCCCCCCAAGAAGAACGGCGGCGTCTTTGGTGGTCTCTTTGCCAAGAAAGACTGACACTGGCGGCGGGGCGGCGGCGCCATTTCAACTCATATATAATTTCTTTGTTCTGTTGCCTTTTTTCTTTTCTCATGTTGCTCTGATTGATTATTTTTCAATACTATCTATGGTTACATTATTAATTATTGTTGGTAATTACTTTATTTTATTTATCATTATTATGTTCAATTAATTGATACGACAAAGATCTAGCTGCTAATATGATGTCGATTTTCTTAGGAGAAAGTGTGGGAATTGTGATGGAATATGAATTAATCCAACTAGAAAATAACAAATTTTTTT

mRNA sequence

TGAGGACTTTGAATCAAAGGGATAAGGCGCCTGTGGTGAGCTCGCGCTTCACATCACTCCATCGCCTCTTATTTTACCCAAATATCCTCTTCCCAATTTCATTCCATTTTTCCAATTAAAAAAACAACATTATGGCCTCTCTTCCAATTGCATTCTCTCCCGCCGCCGGACGCGTATTCGCAGCCACCGCGGCCAAAGGCGCCGGCGAAAGCAAGAAAGAAAAGGGCCTTCTTGATTGGATCATCGGCAGCTTGAATAAGGATCAGCTTCTTGAAACCGACCCTGTTCTTCAAAAAGTCGAAGGCAAGGACGGTACCTCCGGTAACGGCACCGGCACCGTCCGCGGCCGAAAGAATTCCGTCCAAATCCCCCCCAAGAAGAACGGCGGCGTCTTTGGTGGTCTCTTTGCCAAGAAAGACTGACACTGGCGGCGGGGCGGCGGCGCCATTTCAACTCATATATAATTTCTTTGTTCTGTTGCCTTTTTTCTTTTCTCATGTTGCTCTGATTGATTATTTTTCAATACTATCTATGGTTACATTATTAATTATTGTTGGTAATTACTTTATTTTATTTATCATTATTATGTTCAATTAATTGATACGACAAAGATCTAGCTGCTAATATGATGTCGATTTTCTTAGGAGAAAGTGTGGGAATTGTGATGGAATATGAATTAATCCAACTAGAAAATAACAAATTTTTTT

Coding sequence (CDS)

ATGGCCTCTCTTCCAATTGCATTCTCTCCCGCCGCCGGACGCGTATTCGCAGCCACCGCGGCCAAAGGCGCCGGCGAAAGCAAGAAAGAAAAGGGCCTTCTTGATTGGATCATCGGCAGCTTGAATAAGGATCAGCTTCTTGAAACCGACCCTGTTCTTCAAAAAGTCGAAGGCAAGGACGGTACCTCCGGTAACGGCACCGGCACCGTCCGCGGCCGAAAGAATTCCGTCCAAATCCCCCCCAAGAAGAACGGCGGCGTCTTTGGTGGTCTCTTTGCCAAGAAAGACTGA

Protein sequence

MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDGTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD

Homology

[Close]

BLAST of MELO3C025865 vs. NCBI nr
Match: XP_008464052.1 (PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 uncharacterized protein E6C27_scaffold89G00830 [Cucumis melo var. makuwa] >TYK15410.1 uncharacterized protein E5676_scaffold571G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD 97
          GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD
Sbjct: 61 GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of MELO3C025865 vs. NCBI nr
Match: XP_004143212.1 (uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical protein Csa_020752 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 2.6e-40
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 97
            SGNGTG+VR GRKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of MELO3C025865 vs. NCBI nr
Match: XP_038901860.1 (uncharacterized protein LOC120088545 [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 1.8e-36
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAA RVFAATAAKGAGESKKE+GLLDWIIGSLNKDQLLETDPVLQKVEGK 
Sbjct: 1  MASLPIAFSPAAVRVFAATAAKGAGESKKEQGLLDWIIGSLNKDQLLETDPVLQKVEGK- 60

Query: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 97
            +GNG+GTVR GRKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGGFGGLFAKKD 96

[Close]

BLAST of MELO3C025865 vs. NCBI nr
Match: KAG7010512.1 (hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.8 bits (390), Expect = 3.7e-34
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSL +DQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKD 60

Query: 61 GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD 97
            SG  +G   GRKNSVQ+PPKKNGG FGGLFAK+D
Sbjct: 61 SNSGTVSG---GRKNSVQVPPKKNGG-FGGLFAKRD 92

[Close]

BLAST of MELO3C025865 vs. NCBI nr
Match: XP_023532336.1 (uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.6 bits (379), Expect = 6.9e-33
Identity = 81/97 (83.51%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASL  AFSPAAGRVFAATAAKGAGESKKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGESKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 97
          G + NG GTVR G+KNSVQ+PPKKN GVFGGLFAKKD
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of MELO3C025865 vs. ExPASy TrEMBL
Match: A0A5A7V5S9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00530 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD 97
          GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD
Sbjct: 61 GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of MELO3C025865 vs. ExPASy TrEMBL
Match: A0A1S3CKK5 (uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD 97
          GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD
Sbjct: 61 GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of MELO3C025865 vs. ExPASy TrEMBL
Match: A0A0A0KC59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 97
            SGNGTG+VR GRKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of MELO3C025865 vs. ExPASy TrEMBL
Match: A0A6J1L2X7 (uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.7e-33
Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 97
          G + NG GTVR G+KNSVQ+PPKKN GVFGGLFAKKD
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of MELO3C025865 vs. ExPASy TrEMBL
Match: A0A6J1G777 (uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC111451452 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.7e-33
Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 97
          G + NG GTVR G+KNSVQ+PPKKN GVFGGLFAKKD
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of MELO3C025865 vs. TAIR 10
Match: AT3G47070.1 (LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 4.8e-16
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNK-DQLLETDPVLQKVEGK 60
          ++SL ++F+PA  RV+A +   G+G  K+EK  +D+++G + K DQ  ET+P+L+KV+ K
Sbjct: 2  VSSLLMSFAPATVRVYATSTKGGSGGPKEEKNPIDFVLGFMTKQDQFYETNPLLKKVDEK 61

Query: 61 DGTSGNGTGTVRGRKNSVQIP-PKKNGGVFGGL 92
          +GT+  G GTVRG KNS   P PKK+ G FGGL
Sbjct: 62 EGTTTGGRGTVRGGKNSAPTPVPKKSEGGFGGL 94

The following BLAST results are available for this feature:

BLAST of MELO3C025865 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C025865 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464052.1	2.3e-44	100.00	PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 unc...	[more]
XP_004143212.1	2.6e-40	93.81	uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical ...	[more]
XP_038901860.1	1.8e-36	89.69	uncharacterized protein LOC120088545 [Benincasa hispida]	[more]
KAG7010512.1	3.7e-34	86.46	hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023532336.1	6.9e-33	83.51	uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C025865 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5S9	1.1e-44	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKK5	1.1e-44	100.00	uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=...	[more]
A0A0A0KC59	1.3e-40	93.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1	[more]
A0A6J1L2X7	9.7e-33	82.47	uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927...	[more]
A0A6J1G777	9.7e-33	82.47	uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]

BLAST of MELO3C025865 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47070.1	4.8e-16	48.39	LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast ...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021584	Thylakoid soluble phosphoprotein TSP9	PFAM	PF11493	TSP9	coord: 20..94 e-value: 2.0E-23 score: 82.8
IPR021584	Thylakoid soluble phosphoprotein TSP9	PANTHER	PTHR36370	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..74
None	No IPR available	PANTHER	PTHR36370:SF1	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..96
IPR037244	Thylakoid soluble phosphoprotein TSP9 superfamily	SUPERFAMILY	144256	TSP9-like	coord: 20..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025865.1	MELO3C025865.1	mRNA