MELO3C025802 (gene) Melon (DHL92) v4

Overview


Name	MELO3C025802
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Glutamate--tRNA ligase
Location	chr04: 18186131 .. 18186475 (+)
RNA-Seq Expression	MELO3C025802
Synteny	MELO3C025802

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGTAACTACTGCGCTTACGTGAACCAGAACTCGTCTCTGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGCGCTCTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGACTTATAATTGCCATTAAGACATCATCATGTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTGATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

mRNA sequence

ATGGATAGTAACTACTGCGCTTACGTGAACCAGAACTCGTCTCTGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGCGCTCTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGACTTATAATTGCCATTAAGACATCATCATGTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTGATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

Coding sequence (CDS)

ATGGATAGTAACTACTGCGCTTACGTGAACCAGAACTCGTCTCTGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGCGCTCTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGACTTATAATTGCCATTAAGACATCATCATGTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTGATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

Protein sequence

MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTSSCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR

Homology

[Close]

BLAST of MELO3C025802 vs. NCBI nr
Match: KAA0058525.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYK07220.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60
           MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS
Sbjct: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60

Query: 61  SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of MELO3C025802 vs. NCBI nr
Match: KAE8637311.1 (hypothetical protein CSA_023553, partial [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 4.3e-50
Identity = 107/114 (93.86%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60
           MDSNY AY NQNSS RPLAI LALASAV LSPLRSYETSWSSGFVVPLVLLGLI+AIKTS
Sbjct: 4   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 63

Query: 61  SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           S CSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 64  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 117

[Close]

BLAST of MELO3C025802 vs. NCBI nr
Match: KAG6581812.1 (hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.6 bits (436), Expect = 2.0e-39
Identity = 97/119 (81.51%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60
           MDSNY AY NQ SS RPLAIVLALASAV LSPLR YE+ WSSGFV+PLVLL LIIAIKTS
Sbjct: 1   MDSNYGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60

Query: 61  SCCSSTS-----RDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           S CSS S     RDSAIL SD PSWVLKIGSSSWGLAG+LMMLI GLSWQSSV+EFLWR
Sbjct: 61  SSCSSMSTDRRERDSAILSSD-PSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118

[Close]

BLAST of MELO3C025802 vs. NCBI nr
Match: XP_030969466.1 (uncharacterized protein LOC115989757 [Quercus lobata])

HSP 1 Score: 138.3 bits (347), Expect = 4.2e-29
Identity = 76/118 (64.41%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 8   YVNQNSSLRPLAIVLALASAVALSPL--------RSYETSWSSGFVVPLVLLGLIIAIKT 67
           Y +Q SS R +A+VLAL SA+ LSPL        R YET WSSGFV+P+VL GLIIAIKT
Sbjct: 6   YTSQYSSQRSVAMVLALVSAIVLSPLYVTRKNDTRYYETKWSSGFVLPMVLAGLIIAIKT 65

Query: 68  SSCCSSTSRD---SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           +S CSS S     ++I+PS  PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 66  TSSCSSMSAQGGRASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQESVQEFFWR 123

[Close]

BLAST of MELO3C025802 vs. NCBI nr
Match: KAF7814039.1 (hypothetical protein G2W53_028008 [Senna tora])

HSP 1 Score: 137.1 bits (344), Expect = 9.4e-29
Identity = 76/121 (62.81%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 5   YCAYVNQNSSLRPLAIVLALASAVALSPL-----------RSYETSWSSGFVVPLVLLGL 64
           Y AY +Q SS R LA+VLALASAV LSPL           R YE+ WS GFV+P++L GL
Sbjct: 8   YAAYSSQGSSQRSLAMVLALASAVVLSPLYNVKPKSEGIGRYYESKWSFGFVLPMLLAGL 67

Query: 65  IIAIKTSSCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLW 115
           IIAI+TSS  SST R +++LPS  PSWVL+IGSSSWGLAG+L+ML+L L WQ+SVQEF W
Sbjct: 68  IIAIRTSSSSSSTPR-ASLLPSPEPSWVLRIGSSSWGLAGVLLMLMLVLHWQASVQEFFW 127

[Close]

BLAST of MELO3C025802 vs. ExPASy TrEMBL
Match: A0A5A7UY99 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001090 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.8e-55
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60
           MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS
Sbjct: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60

Query: 61  SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of MELO3C025802 vs. ExPASy TrEMBL
Match: A0A0A0LEN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 107/114 (93.86%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60
           MDSNY AY NQNSS RPLAI LALASAV LSPLRSYETSWSSGFVVPLVLLGLI+AIKTS
Sbjct: 1   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60

Query: 61  SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           S CSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of MELO3C025802 vs. ExPASy TrEMBL
Match: A0A7N2LMQ6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.0e-29
Identity = 76/118 (64.41%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 8   YVNQNSSLRPLAIVLALASAVALSPL--------RSYETSWSSGFVVPLVLLGLIIAIKT 67
           Y +Q SS R +A+VLAL SA+ LSPL        R YET WSSGFV+P+VL GLIIAIKT
Sbjct: 6   YTSQYSSQRSVAMVLALVSAIVLSPLYVTRKNDTRYYETKWSSGFVLPMVLAGLIIAIKT 65

Query: 68  SSCCSSTSRD---SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           +S CSS S     ++I+PS  PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 66  TSSCSSMSAQGGRASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQESVQEFFWR 123

[Close]

BLAST of MELO3C025802 vs. ExPASy TrEMBL
Match: A0A2N9IBH6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49527 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.3e-28
Identity = 73/119 (61.34%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 8   YVNQNSSLRPLAIVLALASAVALSPLRS--------YETSWSSGFVVPLVLLGLIIAIKT 67
           Y  Q SS R +A+VL+L SA+ LSPL +        YET WSSGFV+P+VL+GLIIAI+T
Sbjct: 6   YTGQYSSQRSVAMVLSLVSAIVLSPLYARRKNDTSYYETKWSSGFVLPMVLVGLIIAIRT 65

Query: 68  SSCCSSTSRD----SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           +S CSS S      ++I+PS  PSWVL+IGSSSWGLAGIL+ML+L LSWQ+SVQEF WR
Sbjct: 66  TSSCSSMSAQGGARASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQASVQEFFWR 124

[Close]

BLAST of MELO3C025802 vs. ExPASy TrEMBL
Match: A0A067KX22 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24696 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.9e-28
Identity = 76/119 (63.87%), Postives = 88/119 (73.95%), Query Frame = 0


Query: 5   YCAYVNQNSSLRPLAIVLALASAVALSP---------LRSYETSWSSGFVVPLVLLGLII 64
           Y  Y +QNSS R LA+VLAL SAV LSP         LR YET WSSGFV+P+VL GLII
Sbjct: 4   YNNYSSQNSSQRGLALVLALVSAVVLSPLYVNRKTDSLRFYETKWSSGFVLPMVLGGLII 63

Query: 65  AIKTSSCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           AI+T+S  SS  R  +++P   PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 64  AIRTTS-TSSVQRRESLIPCPDPSWVLRIGSSSWGLAGILVMLMLVLSWQESVQEFFWR 121

The following BLAST results are available for this feature:

BLAST of MELO3C025802 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058525.1	1.0e-54	100.00	putative transmembrane protein [Cucumis melo var. makuwa] >TYK07220.1 putative t...	[more]
KAE8637311.1	4.3e-50	93.86	hypothetical protein CSA_023553, partial [Cucumis sativus]	[more]
KAG6581812.1	2.0e-39	81.51	hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_030969466.1	4.2e-29	64.41	uncharacterized protein LOC115989757 [Quercus lobata]	[more]
KAF7814039.1	9.4e-29	62.81	hypothetical protein G2W53_028008 [Senna tora]	[more]

BLAST of MELO3C025802 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C025802 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UY99	4.8e-55	100.00	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0LEN3	2.1e-50	93.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1	[more]
A0A7N2LMQ6	2.0e-29	64.41	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2N9IBH6	2.3e-28	61.34	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49527 PE=4 SV=1	[more]
A0A067KX22	2.9e-28	63.87	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24696 PE=4 SV=1	[more]

BLAST of MELO3C025802 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758	TRANSMEMBRANE PROTEIN	coord: 1..114
None	No IPR available	PANTHER	PTHR35758:SF1	SERINE RICH PROTEIN	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025802.1	MELO3C025802.1	mRNA