MELO3C025653 (gene) Melon (DHL92) v4

Overview
NameMELO3C025653
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPrecursor of CEP13
Locationchr07: 4393408 .. 4393677 (+)
RNA-Seq ExpressionMELO3C025653
SyntenyMELO3C025653
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGCAGAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTCGGTGCTATGCCAAGCACACATGAGCTTGGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATGGGGGTTGATGTTAATTATATGCTTCTCGGCGCTCTTCCGAAAGGCCCAACGCCCCCATCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTTAGTGATGGTGATCGAGTCTTGGTATCTGCTCCGAGTCCCGGAATTGGTCATCGTTAA

mRNA sequence

ATGGGTAGCAGAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTCGGTGCTATGCCAAGCACACATGAGCTTGGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATGGGGGTTGATGTTAATTATATGCTTCTCGGCGCTCTTCCGAAAGGCCCAACGCCCCCATCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTTAGTGATGGTGATCGAGTCTTGGTATCTGCTCCGAGTCCCGGAATTGGTCATCGTTAA

Coding sequence (CDS)

ATGGGTAGCAGAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTCGGTGCTATGCCAAGCACACATGAGCTTGGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATGGGGGTTGATGTTAATTATATGCTTCTCGGCGCTCTTCCGAAAGGCCCAACGCCCCCATCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTTAGTGATGGTGATCGAGTCTTGGTATCTGCTCCGAGTCCCGGAATTGGTCATCGTTAA

Protein sequence

MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPSAPSERGNPAPFSDGDRVLVSAPSPGIGHR
Homology
BLAST of MELO3C025653 vs. NCBI nr
Match: KAA0066754.1 (hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK27901.1 hypothetical protein E5676_scaffold384G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 1  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 60
          MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS
Sbjct: 2  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90
          APSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90

BLAST of MELO3C025653 vs. NCBI nr
Match: KGN55050.1 (hypothetical protein Csa_012928 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 2.5e-37
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0

Query: 1  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 60
          MGS+K IMVALLVVA VL QAHMSLGIRKLSNKEMKMVP+GVDVNYMLLGALPKGPTPPS
Sbjct: 2  MGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90
          APSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90

BLAST of MELO3C025653 vs. NCBI nr
Match: KAG6607932.1 (hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 60
          M ++KF M A L +A +LCQ H +L IR   +K+ K+  MGV    MLLG+LP+GP PPS
Sbjct: 1  MCTKKFTMAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPS 60

Query: 61 APSERGNPAPFSDG 75
          APS R NPAPFS G
Sbjct: 61 APSNRENPAPFSGG 74

BLAST of MELO3C025653 vs. ExPASy Swiss-Prot
Match: Q9FZ54 (Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.7e-05
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 0

Query: 16 SVLCQAHMSLGIRKLSNKEMK-MVPMGVDVNYMLLGALPKGPTPPSAPSERGNPAPFSDG 75
          S++C   + +G    S++  K +VP G     + L ALPKG  PPS PS++G+ +P  D 
Sbjct: 9  SMICLLILIVGFVLQSSQARKVLVPYGTSKG-LFLSALPKGNVPPSGPSDKGHTSPPDDT 68

Query: 76 D------------RVLVSAPSPGIGH 89
          D            R L S PSPG+GH
Sbjct: 69 DQRMVPENSPEIYRRLESVPSPGVGH 93

BLAST of MELO3C025653 vs. ExPASy TrEMBL
Match: A0A5A7VHE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00860 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.3e-41
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 1  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 60
          MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS
Sbjct: 2  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90
          APSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90

BLAST of MELO3C025653 vs. ExPASy TrEMBL
Match: A0A0A0KZH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-37
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0

Query: 1  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 60
          MGS+K IMVALLVVA VL QAHMSLGIRKLSNKEMKMVP+GVDVNYMLLGALPKGPTPPS
Sbjct: 2  MGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90
          APSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90

BLAST of MELO3C025653 vs. ExPASy TrEMBL
Match: A0A5B7APD8 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_027968 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-04
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 0

Query: 9   VALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPSAPSERGNP 68
           ++L+ +  ++C A  SL  RKL + E KM    ++ + ++L A+PKG TPPS+PS +G+ 
Sbjct: 42  LSLIFILVLICVAPPSLEARKLLSME-KMKAPSLEDSSLVLSAIPKGATPPSSPSGKGHK 101

Query: 69  APFSDG---------DRVLVSAPSPGIGH 89
              ++          DR+L S PSPGIGH
Sbjct: 102 MVINERLFTLHLAHIDRILQSVPSPGIGH 129

BLAST of MELO3C025653 vs. TAIR 10
Match: AT1G16950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 5.4e-06
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 0

Query: 16 SVLCQAHMSLGIRKLSNKEMK-MVPMGVDVNYMLLGALPKGPTPPSAPSERGNPAPFSDG 75
          S++C   + +G    S++  K +VP G     + L ALPKG  PPS PS++G+ +P  D 
Sbjct: 9  SMICLLILIVGFVLQSSQARKVLVPYGTSKG-LFLSALPKGNVPPSGPSDKGHTSPPDDT 68

Query: 76 D------------RVLVSAPSPGIGH 89
          D            R L S PSPG+GH
Sbjct: 69 DQRMVPENSPEIYRRLESVPSPGVGH 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0066754.11.1e-40100.00hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK2790... [more]
KGN55050.12.5e-3794.38hypothetical protein Csa_012928 [Cucumis sativus][more]
KAG6607932.11.2e-1055.41hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Q9FZ547.7e-0537.21Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A5A7VHE05.3e-41100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KZH31.2e-3794.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1[more]
A0A5B7APD81.8e-0438.20Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_027968... [more]
Match NameE-valueIdentityDescription
AT1G16950.15.4e-0637.21unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025653.1MELO3C025653.1mRNA