|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. TCAGCCTTCTCCTTTTACTTACCTTTCCCTTTTCGTCTCTTTTTGTGCTATCTCATTTTTTAATTGAGGCCTAAAAAATAAACAATGGCTAGCATTTCTTCAGAGCTCTTTCAATCCAATCTCAAGAACAGTCATGGAGATTGCGGCCGCAGTGGTAAGAACTATCTCGACCCGCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCAACCCCATATTGATATCGGCGGAGGCGGAAGTATAGTTGCAGATTACGACTTTGCTCCGGCAGCATGAATAAAGTGATCAAATACATGATTACAAGATAACATAATTTCTTTTGCTGATAAATTTGAAGTAAGAGCGGTAATAAATATTTTTTTATCTTCTGAGTTATGTTTAGATTGACTGTCAATATACTGTATTAGATATATTATAAC mRNA sequence TCAGCCTTCTCCTTTTACTTACCTTTCCCTTTTCGTCTCTTTTTGTGCTATCTCATTTTTTAATTGAGGCCTAAAAAATAAACAATGGCTAGCATTTCTTCAGAGCTCTTTCAATCCAATCTCAAGAACAGTCATGGAGATTGCGGCCGCAGTGGTAAGAACTATCTCGACCCGCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCAACCCCATATTGATATCGGCGGAGGCGGAAGTATAGTTGCAGATTACGACTTTGCTCCGGCAGCATGAATAAAGTGATCAAATACATGATTACAAGATAACATAATTTCTTTTGCTGATAAATTTGAAGTAAGAGCGGTAATAAATATTTTTTTATCTTCTGAGTTATGTTTAGATTGACTGTCAATATACTGTATTAGATATATTATAAC Coding sequence (CDS) ATGGCTAGCATTTCTTCAGAGCTCTTTCAATCCAATCTCAAGAACAGTCATGGAGATTGCGGCCGCAGTGGTAAGAACTATCTCGACCCGCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCAACCCCATATTGATATCGGCGGAGGCGGAAGTATAGTTGCAGATTACGACTTTGCTCCGGCAGCATGA Protein sequence MASISSELFQSNLKNSHGDCGRSGKNYLDPPPPPPLPLPLPLPLPQPHIDIGGGGSIVADYDFAPAA
Homology
BLAST of MELO3C025287 vs. NCBI nr
Match: KGN65403.1 (hypothetical protein Csa_019940 [Cucumis sativus]) HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22 Identity = 59/67 (88.06%), Postives = 59/67 (88.06%), Query Frame = 0 Query: 1 MASISSELFQSNLKNSHGDCGRSGKNYLDPPPPPPLPLPLPLPLPQPHIDIGGGGSIVAD 60 MASISSELFQSNLKNSHGD GKNYLDPPPPP PLPLPLPQPHIDIGGGGSIVAD Sbjct: 1 MASISSELFQSNLKNSHGDRCHGGKNYLDPPPPP----PLPLPLPQPHIDIGGGGSIVAD 60
Query: 61 YDFAPAA 68 YDFAPAA Sbjct: 61 YDFAPAA 63
BLAST of MELO3C025287 vs. ExPASy TrEMBL
Match: A0A0A0LUD7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G409740 PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 8.3e-23 Identity = 59/67 (88.06%), Postives = 59/67 (88.06%), Query Frame = 0 Query: 1 MASISSELFQSNLKNSHGDCGRSGKNYLDPPPPPPLPLPLPLPLPQPHIDIGGGGSIVAD 60 MASISSELFQSNLKNSHGD GKNYLDPPPPP PLPLPLPQPHIDIGGGGSIVAD Sbjct: 1 MASISSELFQSNLKNSHGDRCHGGKNYLDPPPPP----PLPLPLPQPHIDIGGGGSIVAD 60
Query: 61 YDFAPAA 68 YDFAPAA Sbjct: 61 YDFAPAA 63
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN65403.1 | 1.7e-22 | 88.06 | hypothetical protein Csa_019940 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LUD7 | 8.3e-23 | 88.06 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G409740 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 27..46 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..19 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..51 |
Relationships
The following mRNA feature(s) are a part of this gene:
|