MELO3C024264 (gene) Melon (DHL92) v4

Overview


Name	MELO3C024264
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	photosynthetic NDH subunit of subcomplex B 3, chloroplastic
Location	chr01: 34411955 .. 34413669 (-)
RNA-Seq Expression	MELO3C024264
Synteny	MELO3C024264

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGGAACCCTTCATATCTGTCGATTTCACTTCAGCTTTGTAGAACCTTACCCATAACGATCGACGGCGACATCAGATAAGGCCACAAAGAACCACACAAACACAGCCATAATGATTTATCTTTCACTGAAACACTTCATTTCTTCAACCTTCAATTCCCCAAAATGGAGACTCTCCATCTGGGTTCATACCATTTATCATCTTCATCCTCCTTTCGTTCCTTCAACTACATTACGAATTCCTCCCACACCCTTAAACGCTTTCGCTCTCTTACTTTCCGTAGAACCCAAGTCAGAGCTGTTGGCACTGTTTCCCAGAGTCAATCTGAAGCCACTGACCCTGAGGAGCCTCCGATTGTGGATTTGGCTTTCGTTAATGTAAGTTGTAAACTTGCAATGTCAAATTTTGAGGGTTTGTTTTGGATTACTGAGTATGGTTTTGTGTGTGTGTGTGTGTGTGTTTTTTTTTTTTGTTTTCAGTCTGTGTTGCTTCCTGATGGAACTCCAGATGTGCACTTTCGTCGAGCTTGTGGCGGGCAAAAGCTTAGAAACATAATGTTGGATTCTAATATTGACTTGTATGGACCTTATGTGAGTTTCCCCGATCATTAACTTGTTGAGGAACCTGGGGTTTCAATTAGTTTTGATTATCGTATTATGGTTTTGATGTTGTTTTACAGTCGAGATTTCTGTTGAACTGTGCTGGTGGAGGAACCTGTGGGACTTGTATGGTGGAGGTGATTTTTCTGCATGATCATGTTCTAAACAGGATTTAATCACTGCCCTTTTCATTTCTACTATCTGAATCATTGTTTATTTGATCATTATGGTAAAGTTGTTCAATTCATGACTTGGATAGACCGACTTAGAAGGTAGAGGAGTTTAAAAGTTGGTGCTGTGGCCATTGGAAAATGAAAGAAATGAAGAAGAAATTCAATCCTAATGTTCTGCAACAAGTCTTCTGACTGAAAAATTTACCGTTTCAGATTGTTGAAGGGAAAGAGCTACTGAATCCTCGTACAGACATAGAGAAAGACAAACTCAAAAGGGTAAAAACACTGATACCATTGACACTATAAACTGAGAAATCAAAACGAATCAATAACTATGGACACCGTCATGTAGATGTTAAGTTCATTCGAATTTTTCATTCGAATCCTTTTAACATCATTTTGTGGCTGAATCAAAACAATGATAGAAGTATAATGATTTTGTTTTCATGTACAGAAACCTAAAAACTGGAGACTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGGTAAATAGTTGAAGCTTGATTGATGATGTTCTTGAGCAGAATAGTCTCACAGCCTTCTCTTTTTCAAAAAAGTTGATGAGTTTTAATTGTTTGTTTTCTTTGGATGCAGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGCTATGAAGAAGTAGATCTTTCAGAGTTATCTGAGTCTGCATAATTTAACTCTTCTACTCTTTTTTGACCTATCGGAGTCAGCTGTGAAGATTGAGCTATGGATATTAACTACTCATCCACTTTGGAGCCTACAAAGACAAGCTCCCTGCCTCAGTATCATCAATGTAATTATTCCTTGTCTATATTCAACAGTTCCATTCTTTTGTTGGGCAATAAATGGTTAAGTGGTGCTTTCCTTCTCGTTAATATAGTGTTTGTTTGTTTGCCTATGA

mRNA sequence

CTTTGGAACCCTTCATATCTGTCGATTTCACTTCAGCTTTGTAGAACCTTACCCATAACGATCGACGGCGACATCAGATAAGGCCACAAAGAACCACACAAACACAGCCATAATGATTTATCTTTCACTGAAACACTTCATTTCTTCAACCTTCAATTCCCCAAAATGGAGACTCTCCATCTGGGTTCATACCATTTATCATCTTCATCCTCCTTTCGTTCCTTCAACTACATTACGAATTCCTCCCACACCCTTAAACGCTTTCGCTCTCTTACTTTCCGTAGAACCCAAGTCAGAGCTGTTGGCACTGTTTCCCAGAGTCAATCTGAAGCCACTGACCCTGAGGAGCCTCCGATTGTGGATTTGGCTTTCGTTAATTCTGTGTTGCTTCCTGATGGAACTCCAGATGTGCACTTTCGTCGAGCTTGTGGCGGGCAAAAGCTTAGAAACATAATGTTGGATTCTAATATTGACTTGTATGGACCTTATTCGAGATTTCTGTTGAACTGTGCTGGTGGAGGAACCTGTGGGACTTGTATGGTGGAGATTGTTGAAGGGAAAGAGCTACTGAATCCTCGTACAGACATAGAGAAAGACAAACTCAAAAGGAAACCTAAAAACTGGAGACTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGCTATGAAGAAGTAGATCTTTCAGAGTTATCTGAGTCTGCATAATTTAACTCTTCTACTCTTTTTTGACCTATCGGAGTCAGCTGTGAAGATTGAGCTATGGATATTAACTACTCATCCACTTTGGAGCCTACAAAGACAAGCTCCCTGCCTCAGTATCATCAATGTAATTATTCCTTGTCTATATTCAACAGTTCCATTCTTTTGTTGGGCAATAAATGGTTAAGTGGTGCTTTCCTTCTCGTTAATATAGTGTTTGTTTGTTTGCCTATGA

Coding sequence (CDS)

ATGGAGACTCTCCATCTGGGTTCATACCATTTATCATCTTCATCCTCCTTTCGTTCCTTCAACTACATTACGAATTCCTCCCACACCCTTAAACGCTTTCGCTCTCTTACTTTCCGTAGAACCCAAGTCAGAGCTGTTGGCACTGTTTCCCAGAGTCAATCTGAAGCCACTGACCCTGAGGAGCCTCCGATTGTGGATTTGGCTTTCGTTAATTCTGTGTTGCTTCCTGATGGAACTCCAGATGTGCACTTTCGTCGAGCTTGTGGCGGGCAAAAGCTTAGAAACATAATGTTGGATTCTAATATTGACTTGTATGGACCTTATTCGAGATTTCTGTTGAACTGTGCTGGTGGAGGAACCTGTGGGACTTGTATGGTGGAGATTGTTGAAGGGAAAGAGCTACTGAATCCTCGTACAGACATAGAGAAAGACAAACTCAAAAGGAAACCTAAAAACTGGAGACTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGCTATGAAGAAGTAGATCTTTCAGAGTTATCTGAGTCTGCATAA

Protein sequence

METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPEEPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKAHEWGYEEVDLSELSESA

Homology

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BLAST of MELO3C024264 vs. NCBI nr
Match: XP_008462178.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis melo])

HSP 1 Score: 402.5 bits (1033), Expect = 2.1e-108
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60
           METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEEVDLSELSESA 198
           HEWGYEEVDLSELSESA
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of MELO3C024264 vs. NCBI nr
Match: KAA0059320.1 (photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK04007.1 photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa])

HSP 1 Score: 398.3 bits (1022), Expect = 3.9e-107
Identity = 195/197 (98.98%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60
           METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTV QSQSEA DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEEVDLSELSESA 198
           HEWGYEEVDLSELSESA
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of MELO3C024264 vs. NCBI nr
Match: XP_004141758.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >KGN45396.1 hypothetical protein Csa_016364 [Cucumis sativus])

HSP 1 Score: 385.6 bits (989), Expect = 2.6e-103
Identity = 188/196 (95.92%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60
           ME LHLGSYHL SSSSFRSFNYITNSSHTLKRFR LTFRRTQVRAVGTV QSQSEATDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEEVDLSELSES 197
           HEWGYEEV+LS+ SES
Sbjct: 181 HEWGYEEVELSDSSES 196

[Close]

BLAST of MELO3C024264 vs. NCBI nr
Match: XP_022145222.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia])

HSP 1 Score: 369.0 bits (946), Expect = 2.5e-98
Identity = 178/197 (90.36%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60
           ME  HLGSY LSSSSS RSFNYITNS+HTLKR R L FRR ++RAVGTV QSQSE TDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEEVDLSELSESA 198
           HEWGYE+V+LSE SES+
Sbjct: 181 HEWGYEKVELSESSESS 197

[Close]

BLAST of MELO3C024264 vs. NCBI nr
Match: XP_038899995.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 367.1 bits (941), Expect = 9.6e-98
Identity = 176/197 (89.34%), Postives = 186/197 (94.42%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60
           ME LHLGSY LSSSSSFRSFNYIT+SS TLKRFR L+FRR  +RAVGTV Q+QSE TDPE
Sbjct: 1   MEALHLGSYRLSSSSSFRSFNYITSSSQTLKRFRPLSFRRAHIRAVGTVPQNQSETTDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPP+VD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPVVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLN RTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIIEGKELLNSRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEEVDLSELSESA 198
           HEWGYE+V++SE SESA
Sbjct: 181 HEWGYEKVEISESSESA 197

[Close]

BLAST of MELO3C024264 vs. ExPASy Swiss-Prot
Match: Q9LU21 (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB3 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.6e-61
Identity = 123/188 (65.43%), Postives = 137/188 (72.87%), Query Frame = 0


Query: 6   LGSYHLSSSSSFRSFNYITNSSHTLK---------RFRSLTFRRTQVRAVGTVSQSQSEA 65
           +GS  LS S    S     + SH  K         R +    R   VRA+ T   SQ  A
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 66  TD-PEEPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNC 125
            D P+EPP VD AFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNI+LYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 126 AGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQL 184
           AG GTC TCMVEIV GKELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

[Close]

BLAST of MELO3C024264 vs. ExPASy TrEMBL
Match: A0A1S3CGA8 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500602 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.0e-108
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60
           METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEEVDLSELSESA 198
           HEWGYEEVDLSELSESA
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of MELO3C024264 vs. ExPASy TrEMBL
Match: A0A5A7UW39 (Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002050 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.9e-107
Identity = 195/197 (98.98%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60
           METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTV QSQSEA DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEEVDLSELSESA 198
           HEWGYEEVDLSELSESA
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of MELO3C024264 vs. ExPASy TrEMBL
Match: A0A0A0KC78 (2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447110 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.3e-103
Identity = 188/196 (95.92%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60
           ME LHLGSYHL SSSSFRSFNYITNSSHTLKRFR LTFRRTQVRAVGTV QSQSEATDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEEVDLSELSES 197
           HEWGYEEV+LS+ SES
Sbjct: 181 HEWGYEEVELSDSSES 196

[Close]

BLAST of MELO3C024264 vs. ExPASy TrEMBL
Match: A0A6J1CVZ7 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014722 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.2e-98
Identity = 178/197 (90.36%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60
           ME  HLGSY LSSSSS RSFNYITNS+HTLKR R L FRR ++RAVGTV QSQSE TDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEEVDLSELSESA 198
           HEWGYE+V+LSE SES+
Sbjct: 181 HEWGYEKVELSESSESS 197

[Close]

BLAST of MELO3C024264 vs. ExPASy TrEMBL
Match: A0A6J1KDJ1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494655 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.3e-92
Identity = 166/197 (84.26%), Postives = 182/197 (92.39%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60
           ME LHLG      SSSFRSFNYITNS+HTL RFR LTFRR+++RAVGTV QSQS+ ++P+
Sbjct: 1   MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQ 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPP+VD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN++LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 180

Query: 181 HEWGYEEVDLSELSESA 198
           HEWGYE+V+LSE SES+
Sbjct: 181 HEWGYEKVELSESSESS 191

[Close]

BLAST of MELO3C024264 vs. TAIR 10
Match: AT3G16250.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-62
Identity = 123/188 (65.43%), Postives = 137/188 (72.87%), Query Frame = 0


Query: 6   LGSYHLSSSSSFRSFNYITNSSHTLK---------RFRSLTFRRTQVRAVGTVSQSQSEA 65
           +GS  LS S    S     + SH  K         R +    R   VRA+ T   SQ  A
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 66  TD-PEEPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNC 125
            D P+EPP VD AFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNI+LYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 126 AGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQL 184
           AG GTC TCMVEIV GKELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

[Close]

BLAST of MELO3C024264 vs. TAIR 10
Match: AT4G32590.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 5.4e-30
Identity = 65/146 (44.52%), Postives = 96/146 (65.75%), Query Frame = 0


Query: 40  RTQVRAVGTVSQSQSEATDPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           R +V +  + S S S+A+ P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNW 159
           R+IM D+ I+LY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+KP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 160 RLACQTTVGKPDSRGMLVVQQLPEWK 180
           RLACQT VG  ++ G +VVQ++P+WK
Sbjct: 148 RLACQTIVGNKENSGKVVVQRIPQWK 172

[Close]

BLAST of MELO3C024264 vs. TAIR 10
Match: AT4G32590.3 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-25
Identity = 59/135 (43.70%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 40  RTQVRAVGTVSQSQSEATDPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           R +V +  + S S S+A+ P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNW 159
           R+IM D+ I+LY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+KP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 160 RLACQTTVGKPDSRG 169
           RLACQT VG  ++ G
Sbjct: 148 RLACQTIVGNKENSG 161

[Close]

BLAST of MELO3C024264 vs. TAIR 10
Match: AT4G32590.4 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-16
Identity = 47/115 (40.87%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 40  RTQVRAVGTVSQSQSEATDPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           R +V +  + S S S+A+ P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKR 149
           R+IM D+ I+LY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKK 141

[Close]

BLAST of MELO3C024264 vs. TAIR 10
Match: AT4G32590.2 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-10
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 40  RTQVRAVGTVSQSQSEATDPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           R +V +  + S S S+A+ P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVE 128
           R+IM D+ I+LY  Y + ++NC GGG+CGTC+VE
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVE 120

The following BLAST results are available for this feature:

BLAST of MELO3C024264 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462178.1	2.1e-108	100.00	PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis ...	[more]
KAA0059320.1	3.9e-107	98.98	photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK0400...	[more]
XP_004141758.1	2.6e-103	95.92	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >K...	[more]
XP_022145222.1	2.5e-98	90.36	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia...	[more]
XP_038899995.1	9.6e-98	89.34	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida]	[more]

BLAST of MELO3C024264 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU21	2.6e-61	65.43	Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of MELO3C024264 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CGA8	1.0e-108	100.00	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A5A7UW39	1.9e-107	98.98	Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0KC78	1.3e-103	95.92	2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A6J1CVZ7	1.2e-98	90.36	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charant...	[more]
A0A6J1KDJ1	1.3e-92	84.26	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima ...	[more]

BLAST of MELO3C024264 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16250.1	1.8e-62	65.43	NDH-dependent cyclic electron flow 1	[more]
AT4G32590.1	5.4e-30	44.52	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.3	3.0e-25	43.70	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.4	1.2e-16	40.87	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.2	4.7e-10	38.30	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 113..161 e-value: 2.9E-10 score: 40.0
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 90..161 e-value: 1.22372E-8 score: 48.5452
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 73..181 e-value: 7.0E-19 score: 69.5
None	No IPR available	PANTHER	PTHR23426	FERREDOXIN/ADRENODOXIN	coord: 1..188
None	No IPR available	PANTHER	PTHR23426:SF27	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTIC	coord: 1..188
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 83..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024264.1	MELO3C024264.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0051536	iron-sulfur cluster binding