MELO3C024084 (gene) Melon (DHL92) v4

Overview
NameMELO3C024084
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionZf-CCHC domain-containing protein/UBN2 domain-containing protein
Locationchr04: 19834549 .. 19835744 (+)
RNA-Seq ExpressionMELO3C024084
SyntenyMELO3C024084
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTGAAGGGTATTGGTAAAGTCTATACAACTTCCAAAAATGTTGGATACGTTCCAAGGTCTCTGTCTACCTAAGACTTGGGAAGCTAAGGTGATGGAAATTCTAAAAAGCAAAGGATCTTACCTAACTTCCACTGGAGGAGCTCATTATGAAGGAGCACTTGGAGGATGAGTCCAAAAAGAAAAGCATTACATTGAAGAGCATCCCTTTGGAAGTTAATCCTAAAGATGATGATTGACCTTGATGAAGATGACATTGCTTATTTTTCATGTAAGTACAAAAATTACATAAAAAAAGAAGTATTTCAAGAAACACCTATCAACCCAAAACAAGTGATCAAAATGTGAGAAAAGCATAAAGGATGAGGTGATTTGTTATGAATGTAAAAAATCGAGTCACATGAGAACATATTGCCCACTCCTCAAATCATTTAAGAAGTCCAAGAAGAAGACAATGAAGGCTACTTGGGATGATAATAGTGAAAGTGGAAGTGAAATTGAAGAAATGGCACACCTTGGTCTCATGGCTTATAGTGACAAAGAAGATAAACATGATGATGAGGTAACTCTAGAACCTCCTTTTATTGATGAATTGTTTGAAAATTTTGAAAGTAGGCAAAATGACCTAGAAAAACTTAGTTCTAAAGTATGTTGTGTTTAAGAAGAAATACAATGTTTATTAACTAGTGAAAATAATTCTTTACTCCATATAAAATTGTTTGATTTAAAGAAAATGAAAATGTTGTGTAAATTGAAGAATTAAATGCCTCTTGTGATAAGCATGTTTGTGATTGTAATGAGAAAGATGCTTTGCTTGATAAAGTTAGATTTCTTAAGCATGATGGTTGTGAAGAAAATAACTTGATTAAAATGCTTAAAGAAAATGAACTAAATGTTTTACAAGATCTTGATAGAGCTAAGAAGACTATTAAAAAGTTGACAATAGGTATTCAAAGATTGGACAAAATTATCGAAGTAGGAAAGTCATATGGTGATAAGAGAGGTTTAGATTATATTGATGAATCATCTACTCCTTCAAGTTCTAAAACTAAATTTGCTAAAGCTAAGCATCTCCTATTGTGCCTAAGCTTAATATGCCTAATGATGTGTCTAATCATGTTAGATCTAGCTTTGTACCGACATGTCATAATTGTGGTGTTGAATGTCACATTAGACCTAAATGCTTTAAATTGA

mRNA sequence

ATGCTTTGAAGGGTATTGGTAAAGTCTATACAACTTCCAAAAATGTTGGATACGTTCCAAGGTCTCTGTCTACCTAAGACTTGGGAAGCTAAGGTGATGGAAATTCTAAAAAGCAAAGGATCTTACCTAACTTCCACTGGAGGAGCTCATTATGAAGGAGCACTTGGAGGATGAGTCCAAAAAGAAAAGCATTACATTGAAGAGCATCCCTTTGGAAGTTAATCCTAAAGATGATGATTGACCTTGATGAAGATGACATTGCTTATTTTTCATGTAAGTACAAAAATTACATAAAAAAAGAAGTATTTCAAGAAACACCTATCAACCCAAAACAAGTGATCAAAATGTGAGAAAAGCATAAAGGATGAGGTGATTTGTTATGAATGTAAAAAATCGAGTCACATGAGAACATATTGCCCACTCCTCAAATCATTTAAGAAGTCCAAGAAGAAGACAATGAAGGCTACTTGGGATGATAATAGTGAAAGTGGAAGTGAAATTGAAGAAATGGCACACCTTGGTCTCATGGCTTATAGTGACAAAGAAGATAAACATGATGATGAGGTAACTCTAGAACCTCCTTTTATTGATGAATTGTTTGAAAATTTTGAAAGTAGGCAAAATGACCTAGAAAAACTTAGTTCTAAAGTATGTTGTGTTTAAGAAGAAATACAATGTTTATTAACTAGTGAAAATAATTCTTTACTCCATATAAAATTGTTTGATTTAAAGAAAATGAAAATGTTGTGTAAATTGAAGAATTAAATGCCTCTTGTGATAAGCATGTTTGTGATTGTAATGAGAAAGATGCTTTGCTTGATAAAGTTAGATTTCTTAAGCATGATGGTTGTGAAGAAAATAACTTGATTAAAATGCTTAAAGAAAATGAACTAAATGTTTTACAAGATCTTGATAGAGCTAAGAAGACTATTAAAAAGTTGACAATAGGTATTCAAAGATTGGACAAAATTATCGAAGTAGGAAAGTCATATGGTGATAAGAGAGGTTTAGATTATATTGATGAATCATCTACTCCTTCAAGTTCTAAAACTAAATTTGCTAAAGCTAAGCATCTCCTATTGTGCCTAAGCTTAATATGCCTAATGATGTGTCTAATCATGTTAGATCTAGCTTTGTACCGACATGTCATAATTGTGGTGTTGAATGTCACATTAGACCTAAATGCTTTAAATTGA

Coding sequence (CDS)

ATGCTTAAAGAAAATGAACTAAATGTTTTACAAGATCTTGATAGAGCTAAGAAGACTATTAAAAAGTTGACAATAGGTATTCAAAGATTGGACAAAATTATCGAAGTAGGAAAGTCATATGGTGATAAGAGAGGTTTAGATTATATTGATGAATCATCTACTCCTTCAAGTTCTAAAACTAAATTTGCTAAAGCTAAGCATCTCCTATTGTGCCTAAGCTTAATATGCCTAATGATGTGTCTAATCATGTTAGATCTAGCTTTGTACCGACATGTCATAATTGTGGTGTTGAATGTCACATTAGACCTAAATGCTTTAAATTGA

Protein sequence

MLKENELNVLQDLDRAKKTIKKLTIGIQRLDKIIEVGKSYGDKRGLDYIDESSTPSSSKTKFAKAKHLLLCLSLICLMMCLIMLDLALYRHVIIVVLNVTLDLNALN
Homology
BLAST of MELO3C024084 vs. NCBI nr
Match: KAA0046182.1 (zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa] >TYK00208.1 zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 76/107 (71.03%), Postives = 84/107 (78.50%), Query Frame = 0

Query: 1   MLKENELNVLQDLDRAKKTIKKLTIGIQRLDKIIEVGKSYGDKRGLDYIDESSTPSSSKT 60
           +LKENELNVLQDLD+AK+TIKKLTIG QRLDKIIEVGKSYGDKR L YIDESST  SSKT
Sbjct: 281 VLKENELNVLQDLDKAKETIKKLTIGAQRLDKIIEVGKSYGDKRSLGYIDESST-LSSKT 340

Query: 61  KFAKAKHLLLCLSLICLMMCLIMLDLALYRHVIIVVLNVTLDLNALN 108
            F KA  ++   +     MCL M +L L  +VIIVVL VTLDLNALN
Sbjct: 341 TFVKASPIVPKFN-----MCLTMFNLVLCLYVIIVVLKVTLDLNALN 381

BLAST of MELO3C024084 vs. NCBI nr
Match: XP_031741720.1 (uncharacterized protein LOC116403915 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 1   MLKENELNVLQDLDRAKKTIKKLTIGIQRLDKIIEVGKSYGDKRGLDYIDESSTPSSSKT 60
           +LKENEL+VLQ+LD+AK+TIKKLTIG QRLDKIIEVGKSYGDKRGL YIDESSTPSSSKT
Sbjct: 454 VLKENELSVLQELDKAKETIKKLTIGAQRLDKIIEVGKSYGDKRGLGYIDESSTPSSSKT 513

Query: 61  KFAKAKHLL 70
            F KA  ++
Sbjct: 514 TFVKASPIV 522

BLAST of MELO3C024084 vs. NCBI nr
Match: KAA0051650.1 (zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa] >TYJ97960.1 zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 0

Query: 1   MLKENELNVLQDLDRAKKTIKKLTIGIQRLDKIIEVGKSYGDKRGLDYIDESSTPSSSKT 60
           +LKENELNVLQDLD+AK+TIKKLTI  QRL +IIEVGKSYGDKRGL YIDE STPSSSKT
Sbjct: 213 VLKENELNVLQDLDKAKETIKKLTISAQRLGRIIEVGKSYGDKRGLGYIDELSTPSSSKT 272

Query: 61  KFAKAKHLLLCLSL 75
            F KA  ++  L++
Sbjct: 273 TFVKASPIVPNLNM 286

BLAST of MELO3C024084 vs. NCBI nr
Match: XP_022156978.1 (uncharacterized protein LOC111023806 [Momordica charantia])

HSP 1 Score: 87.8 bits (216), Expect = 6.1e-14
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 0

Query: 1   MLKENELNVLQDLDRAKKTIKKLTIGIQRLDKIIEVGKSYGDKRGLDYIDESSTPSSSKT 60
           +LK+NE + L +LD+AK  IK+LTIG QRLDKIIE GK YGDKRGL YI+E +TPSSSKT
Sbjct: 231 LLKKNESDALVELDKAKDFIKQLTIGAQRLDKIIEXGKPYGDKRGLGYINECATPSSSKT 290

Query: 61  KFAKA 66
            F KA
Sbjct: 291 IFVKA 295

BLAST of MELO3C024084 vs. NCBI nr
Match: XP_022158792.1 (uncharacterized protein LOC111025259 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-13
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 4   ENELNVLQDLDRAKKTIKKLTIGIQRLDKIIEVGKSYGDKRGLDYIDESSTPSSSKTKFA 63
           +N+L  L +LD+AK +IKKLTIG QRLDKIIE+GK YGDKRGL YIDE STPSSSK  F 
Sbjct: 202 QNDLEKLVELDKAKDSIKKLTIGAQRLDKIIELGKPYGDKRGLGYIDECSTPSSSKIIFV 261

Query: 64  KAK---HLLLCLSLICL 78
           KA      L+   ++CL
Sbjct: 262 KASPNMPKLVAPKVVCL 278

BLAST of MELO3C024084 vs. ExPASy TrEMBL
Match: A0A5A7TRZ7 (Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1333G00310 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-24
Identity = 76/107 (71.03%), Postives = 84/107 (78.50%), Query Frame = 0

Query: 1   MLKENELNVLQDLDRAKKTIKKLTIGIQRLDKIIEVGKSYGDKRGLDYIDESSTPSSSKT 60
           +LKENELNVLQDLD+AK+TIKKLTIG QRLDKIIEVGKSYGDKR L YIDESST  SSKT
Sbjct: 281 VLKENELNVLQDLDKAKETIKKLTIGAQRLDKIIEVGKSYGDKRSLGYIDESST-LSSKT 340

Query: 61  KFAKAKHLLLCLSLICLMMCLIMLDLALYRHVIIVVLNVTLDLNALN 108
            F KA  ++   +     MCL M +L L  +VIIVVL VTLDLNALN
Sbjct: 341 TFVKASPIVPKFN-----MCLTMFNLVLCLYVIIVVLKVTLDLNALN 381

BLAST of MELO3C024084 vs. ExPASy TrEMBL
Match: A0A5A7U923 (Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00640 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.2e-19
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 0

Query: 1   MLKENELNVLQDLDRAKKTIKKLTIGIQRLDKIIEVGKSYGDKRGLDYIDESSTPSSSKT 60
           +LKENELNVLQDLD+AK+TIKKLTI  QRL +IIEVGKSYGDKRGL YIDE STPSSSKT
Sbjct: 213 VLKENELNVLQDLDKAKETIKKLTISAQRLGRIIEVGKSYGDKRGLGYIDELSTPSSSKT 272

Query: 61  KFAKAKHLLLCLSL 75
            F KA  ++  L++
Sbjct: 273 TFVKASPIVPNLNM 286

BLAST of MELO3C024084 vs. ExPASy TrEMBL
Match: A0A6J1DS74 (uncharacterized protein LOC111023806 OS=Momordica charantia OX=3673 GN=LOC111023806 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.0e-14
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 0

Query: 1   MLKENELNVLQDLDRAKKTIKKLTIGIQRLDKIIEVGKSYGDKRGLDYIDESSTPSSSKT 60
           +LK+NE + L +LD+AK  IK+LTIG QRLDKIIE GK YGDKRGL YI+E +TPSSSKT
Sbjct: 231 LLKKNESDALVELDKAKDFIKQLTIGAQRLDKIIEXGKPYGDKRGLGYINECATPSSSKT 290

Query: 61  KFAKA 66
            F KA
Sbjct: 291 IFVKA 295

BLAST of MELO3C024084 vs. ExPASy TrEMBL
Match: A0A6J1DY46 (uncharacterized protein LOC111025259 OS=Momordica charantia OX=3673 GN=LOC111025259 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 4   ENELNVLQDLDRAKKTIKKLTIGIQRLDKIIEVGKSYGDKRGLDYIDESSTPSSSKTKFA 63
           +N+L  L +LD+AK +IKKLTIG QRLDKIIE+GK YGDKRGL YIDE STPSSSK  F 
Sbjct: 202 QNDLEKLVELDKAKDSIKKLTIGAQRLDKIIELGKPYGDKRGLGYIDECSTPSSSKIIFV 261

Query: 64  KAK---HLLLCLSLICL 78
           KA      L+   ++CL
Sbjct: 262 KASPNMPKLVAPKVVCL 278

BLAST of MELO3C024084 vs. ExPASy TrEMBL
Match: A0A5D3BT46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold755G00110 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.7e-07
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0

Query: 1   MLKENELNVLQDLDRAKKTIKKLTIGIQRLDKIIEV 37
           MLKENELNVLQDLD+AK+TIKKLTIG QRLDKIIEV
Sbjct: 124 MLKENELNVLQDLDKAKETIKKLTIGAQRLDKIIEV 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0046182.15.0e-2471.03zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo v... [more]
XP_031741720.11.5e-2081.16uncharacterized protein LOC116403915 [Cucumis sativus][more]
KAA0051650.11.1e-1874.32zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo v... [more]
XP_022156978.16.1e-1469.23uncharacterized protein LOC111023806 [Momordica charantia][more]
XP_022158792.13.0e-1362.34uncharacterized protein LOC111025259 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TRZ72.4e-2471.03Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo... [more]
A0A5A7U9235.2e-1974.32Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo... [more]
A0A6J1DS743.0e-1469.23uncharacterized protein LOC111023806 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DY461.5e-1362.34uncharacterized protein LOC111025259 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5D3BT462.7e-0791.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024084.1MELO3C024084.1mRNA