MELO3C023928.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C023928.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTranscription termination factor like
Locationchr04: 24783350 .. 24784065 (+)
RNA-Seq ExpressionMELO3C023928.jh1
SyntenyMELO3C023928.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAGCTCTCTCTCTTACCAACATGGCGGCTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAACCCTCAAAACCTCCATTTTCTGTATCCAATTTCACTCCCATCTTTTTCATCCATCGACTCAACATTTCATCTTAGATTTTTCATCCTCAAATCCTTCACTATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAAAGAGTCGAATCGATCGGATCGAATTGAATTGGTTCCGATTGACATTTTCTGGGTTAGTCATGTAAAGTGAAAAAAGAGTAGGGGGTGATTTATGTTATTTGTTAAAAGTAGAGGGGTTGGTTTGGTGAATTCTGATTATTTGTATTTGTTATTTGAATGATTCTTTTGTTCTTTGGTAATGGTAATGCAAATTATTTGACTTATTCATCCATTTAAAACTATTTTCAATCTTATTATTTTTTCTTAATATTCCAAGTATTATCAATTTCC

mRNA sequence

CAAAGCTCTCTCTCTTACCAACATGGCGGCTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAACCCTCAAAACCTCCATTTTCTGTATCCAATTTCACTCCCATCTTTTTCATCCATCGACTCAACATTTCATCTTAGATTTTTCATCCTCAAATCCTTCACTATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAAAGAGTCGAATCGATCGGATCGAATTGAATTGGTTCCGATTGACATTTTCTGGGTTAGTCATGTAAAGTGAAAAAAGAGTAGGGGGTGATTTATGTTATTTGTTAAAAGTAGAGGGGTTGGTTTGGTGAATTCTGATTATTTGTATTTGTTATTTGAATGATTCTTTTGTTCTTTGGTAATGGTAATGCAAATTATTTGACTTATTCATCCATTTAAAACTATTTTCAATCTTATTATTTTTTCTTAATATTCCAAGTATTATCAATTTCC

Coding sequence (CDS)

ATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAA

Protein sequence

MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
Homology
BLAST of MELO3C023928.jh1 vs. NCBI nr
Match: XP_008461750.1 (PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo] >KAA0052808.1 uncharacterized protein E6C27_scaffold1614G00240 [Cucumis melo var. makuwa] >TYK04160.1 uncharacterized protein E5676_scaffold148G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (424), Expect = 3.95e-52
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88
          AALSDLPPGGELSPSSVRRGRSDDGCKL
Sbjct: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88

BLAST of MELO3C023928.jh1 vs. NCBI nr
Match: XP_011651805.2 (uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 145 bits (367), Expect = 2.42e-43
Identity = 80/95 (84.21%), Postives = 84/95 (88.42%), Query Frame = 0

Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPI +TDAGEMFVRIAMFVF+QLLVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFL
Sbjct: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPS-------SVRRGRSDDGCKL 88
          AALSDLPPGGELSPS       S RR RSDDG +L
Sbjct: 61 AALSDLPPGGELSPSTKVSTPSSARRDRSDDGGRL 95

BLAST of MELO3C023928.jh1 vs. NCBI nr
Match: XP_038905322.1 (uncharacterized protein LOC120091388 [Benincasa hispida])

HSP 1 Score: 134 bits (338), Expect = 6.41e-39
Identity = 75/95 (78.95%), Postives = 79/95 (83.16%), Query Frame = 0

Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPI E+D  EMFV+IAMF FVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPILESDTCEMFVKIAMFAFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSP-------SSVRRGRSDDGCKL 88
          AALSDLPPGGE+SP       SS RR  SDDG + 
Sbjct: 61 AALSDLPPGGEISPTPRVQTPSSFRRDHSDDGGRF 95

BLAST of MELO3C023928.jh1 vs. NCBI nr
Match: KAG7018107.1 (hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122 bits (306), Expect = 4.84e-34
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0

Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          M  I E D   +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 61 AALSDLPPGGELSPSS-------VRRGRSDD 84
          AALSDLPPGGELSPSS       VRR RSDD
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDD 91

BLAST of MELO3C023928.jh1 vs. NCBI nr
Match: KAG6581607.1 (hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122 bits (306), Expect = 1.36e-33
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0

Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          M  I E D   +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1  MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 61 AALSDLPPGGELSPSS-------VRRGRSDD 84
          AALSDLPPGGELSPSS       VRR RSDD
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDD 91

BLAST of MELO3C023928.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UC63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00310 PE=4 SV=1)

HSP 1 Score: 167 bits (424), Expect = 1.91e-52
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88
          AALSDLPPGGELSPSSVRRGRSDDGCKL
Sbjct: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88

BLAST of MELO3C023928.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CFW1 (uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=4 SV=1)

HSP 1 Score: 167 bits (424), Expect = 1.91e-52
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88
          AALSDLPPGGELSPSSVRRGRSDDGCKL
Sbjct: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88

BLAST of MELO3C023928.jh1 vs. ExPASy TrEMBL
Match: A0A4S8IZ19 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb10t12480 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.36e-23
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 0

Query: 4  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 63
          I+     ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA L
Sbjct: 3  IAMDGVSDVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALL 62

Query: 64 SDLPPGGELSPSSVRRGRSDD 84
          SD+PPGGE SPSS  R  +DD
Sbjct: 63 SDMPPGGETSPSSSSRSLADD 83

BLAST of MELO3C023928.jh1 vs. ExPASy TrEMBL
Match: M0RJ50 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.48e-23
Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = 0

Query: 10 GEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPG 69
           ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA LSD+PPG
Sbjct: 5  SDVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALLSDMPPG 64

Query: 70 GELSPSSVRRGRSDD 84
          GE SPSS  R  +DD
Sbjct: 65 GETSPSSSSRSLADD 79

BLAST of MELO3C023928.jh1 vs. ExPASy TrEMBL
Match: A0A426Y8P9 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00022348 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.99e-23
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 0

Query: 15 RIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSP 74
          ++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA LSD+PPGGE SP
Sbjct: 2  KVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALLSDMPPGGETSP 61

Query: 75 SSVRRGRSDD 84
          SS  R  +DD
Sbjct: 62 SSSSRSLADD 71

BLAST of MELO3C023928.jh1 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-13
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 10 GEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPP 69
          G M +++A+F  VQ LVYLIL KSS +F+    L R+ SF+P RSVSIRR LAAL D+P 
Sbjct: 6  GTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPA 65

Query: 70 GGELSPSS 77
          G ++SPSS
Sbjct: 66 GDDMSPSS 73

BLAST of MELO3C023928.jh1 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 7.8e-13
Identity = 36/67 (53.73%), Postives = 53/67 (79.10%), Query Frame = 0

Query: 12 MFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGG 71
          M +++++F  +Q LVYLILSKSS++FS  + + R+ SF+ ARS+SIRR LA L D+P GG
Sbjct: 8  MLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPAGG 67

Query: 72 ELSPSSV 78
          E+SPS++
Sbjct: 68 EMSPSAM 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008461750.13.95e-52100.00PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo] >KAA0052808.1 unc... [more]
XP_011651805.22.42e-4384.21uncharacterized protein LOC105434941 [Cucumis sativus][more]
XP_038905322.16.41e-3978.95uncharacterized protein LOC120091388 [Benincasa hispida][more]
KAG7018107.14.84e-3476.92hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6581607.11.36e-3376.92hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UC631.91e-52100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CFW11.91e-52100.00uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=... [more]
A0A4S8IZ191.36e-2360.49Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb10t12480 PE=4 SV=... [more]
M0RJ503.48e-2364.00Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1[more]
A0A426Y8P97.99e-2368.57Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00022348 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G31945.13.5e-1357.35unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G05575.17.8e-1353.73unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..88
NoneNo IPR availablePANTHERPTHR34268OS01G0321850 PROTEINcoord: 9..79
NoneNo IPR availablePANTHERPTHR34268:SF16OS02G0774200 PROTEINcoord: 9..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023928.jh1.t1MELO3C023928.jh1.t1mRNA