MELO3C023065.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C023065.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionlate embryogenesis abundant protein 1-like
Locationchr05: 6766693 .. 6768429 (-)
RNA-Seq ExpressionMELO3C023065.jh1
SyntenyMELO3C023065.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAACACAAAAACAAAATACAAAATACAAAAAGTCACCTTAATTAGTTTTACAGCTTCCAATTCAAGTTTCTTATTTTCCAAACCAAAGAAAGGGAAAAAGAAAAAGAAATATATGTCTAACATGCAGCAAAGTTTGAATGCTGGCCAAACCAAAGGCCAGACCCAGGTCGTTCCAACTCTCTATTACTTTCTTTTGCTTTTTACTTGAAATAAGTTTCGGTAACTCTCTCCAAAAATTAAATCTTATTTTAGTTAGTAGTCTCTATACTAAAGTTTTATATTTACTTAATGGCTAGATATGGTCATTTTAGTTTTCGTACTTTTATAGTTTACTTATTGGTTAGACATGACCATTTTTTTGAATTGGAATCTTCCCTTAAATCTTTCTTTGTCAAGTTAAATAAAACTGTTTAAAACCACTCGTTTAACCTTACTCGTTTCTGTCCAATTTTTACTTTTTTGTTTTAAGTAGGGTTCAAAATACAATTTTGAAATGTTTTTCAAATATAACATTGAAATTCTAAAATCTTAACTTTTTTTCGGATAATGAGGGGCAGGCAAGAACAGAAGAATGGATGGAAGCCACCAAATTAGGTCCAACAAGTGAACCAAGAGATATGTCTAGTAATTCAGCTCAAGCTCAACTTTGTGCTAATTCTGCTCAACACTCTACTCATCAACGTGATCAAGAACCCACTAGTTTTCTCCAACAGGTAATACTTCTAAATTGCATTTAATCATTCCAAACAAATTCTAATTCTACGAAAAGTGTGTTTTGGATGTTTGATATTGAAATTTGGTATCAACAGTAAATTTGTAATCTTCGGAAGAGAATCAAACAAATGCCTACTAACTAGAAAAACTTGCACACTGTGTGATGCTTGACCATCAACACTCCAACACGATCAGGTCTCTCTAACTGTTTAGAGAAAGTTACAAAGTATAGCAGTTTGGATGTATTTCAGTGCCCATCAAATGACTTGTCATTGCCCTCTTGATTTAATAAGAAATAAGTTTCGTACCGGTATTTACTAATTAACTCCTTGGGCAATTAATTAAGTTGTTGTTACCTAGTGACACAAGCATGCGCAAAAGTGAAACACTTAACCCTAATCTTTGGTATCATAGGTTTGACCCCTATACTTAGATATTATGGCTTGACAGTTGATTCTATATATGAGTCGATCTTCTAAACTTCTATACTCTTTACCTCTCTCTGAACCGTTATTAACTTGATCGTCAGATAGTTGGTGGCCAAGCAACATATTGGTATAAGTTTTTCTATTTTGCATTACGTTTGTTTGATTTTCTTCCTAAGATTACAAATTTATCGTTCGATATCAAATTTCAATATCAACAAAAGAAAAATATAAATTGAACATTGATTTTACATAATTTGGTTTGTAATGTTATAATTTTGTTGCAGACTGGAGAGAAGATGGTTCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGAAGAACGAGATTTTTAAAATAATTAAAGAATTAAGCAACTCTTATTAATTATAATTTTATTACTAATACCTATTTATTTATTTTTTATAAATTTGTGTCCTATATCTTCATTAGGGCATAGGAAGAACAATTCCTTTGTTTGGAATTTGGATATCAATGTAATATAATAAGGCGTAGCAGATATTGCAAATGCATAAATGAAGACTCTATAAGGGTTCATTTTCCCTCC

mRNA sequence

AAAAACACAAAAACAAAATACAAAATACAAAAAGTCACCTTAATTAGTTTTACAGCTTCCAATTCAAGTTTCTTATTTTCCAAACCAAAGAAAGGGAAAAAGAAAAAGAAATATATGTCTAACATGCAGCAAAGTTTGAATGCTGGCCAAACCAAAGGCCAGACCCAGGCAAGAACAGAAGAATGGATGGAAGCCACCAAATTAGGTCCAACAAGTGAACCAAGAGATATGTCTAGTAATTCAGCTCAAGCTCAACTTTGTGCTAATTCTGCTCAACACTCTACTCATCAACGTGATCAAGAACCCACTAGTTTTCTCCAACAGACTGGAGAGAAGATGGTTCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGAAGAACGAGATTTTTAAAATAATTAAAGAATTAAGCAACTCTTATTAATTATAATTTTATTACTAATACCTATTTATTTATTTTTTATAAATTTGTGTCCTATATCTTCATTAGGGCATAGGAAGAACAATTCCTTTGTTTGGAATTTGGATATCAATGTAATATAATAAGGCGTAGCAGATATTGCAAATGCATAAATGAAGACTCTATAAGGGTTCATTTTCCCTCC

Coding sequence (CDS)

ATGTCTAACATGCAGCAAAGTTTGAATGCTGGCCAAACCAAAGGCCAGACCCAGGCAAGAACAGAAGAATGGATGGAAGCCACCAAATTAGGTCCAACAAGTGAACCAAGAGATATGTCTAGTAATTCAGCTCAAGCTCAACTTTGTGCTAATTCTGCTCAACACTCTACTCATCAACGTGATCAAGAACCCACTAGTTTTCTCCAACAGACTGGAGAGAAGATGGTTCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGA

Protein sequence

MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK
Homology
BLAST of MELO3C023065.jh1 vs. NCBI nr
Match: KAA0031971.1 (late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK16791.1 late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (472), Expect = 3.34e-59
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60
          MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR
Sbjct: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60

Query: 61 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96
          DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 61 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

BLAST of MELO3C023065.jh1 vs. NCBI nr
Match: XP_008460707.2 (PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 186 bits (472), Expect = 1.55e-58
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1   MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60
           MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR
Sbjct: 49  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 108

Query: 61  DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96
           DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 109 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 144

BLAST of MELO3C023065.jh1 vs. NCBI nr
Match: XP_011649123.1 (late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetical protein Csa_005950 [Cucumis sativus])

HSP 1 Score: 174 bits (441), Expect = 1.79e-54
Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60
          MSNMQQSLNAGQTKGQTQ RTEEWMEATKLGPT+EP DMSSNSAQAQLCANSAQHSTHQ 
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60

Query: 61 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96
          DQEP S LQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

BLAST of MELO3C023065.jh1 vs. NCBI nr
Match: XP_016902588.1 (PREDICTED: late embryogenesis abundant protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 155 bits (392), Expect = 3.83e-47
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0

Query: 13 TKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTG 72
          T+ + +ARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTG
Sbjct: 2  TQEKIEARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTG 61

Query: 73 EKMVHMAQGAVDTVKETLGMGDKK 96
          EKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 62 EKMVHMAQGAVDTVKETLGMGDKK 85

BLAST of MELO3C023065.jh1 vs. NCBI nr
Match: XP_022138744.1 (late embryogenesis abundant protein 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 115 bits (288), Expect = 3.79e-31
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 0

Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60
          MSN+QQSLNAGQTKGQTQARTEEWMEATK   T E     SNSAQ     +   +S HQ+
Sbjct: 1  MSNIQQSLNAGQTKGQTQARTEEWMEATK-NTTHELNSSDSNSAQLSAQPHQQSNSPHQQ 60

Query: 61 DQ-EPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96
           Q E   FLQQTGEKMV+MAQGAVDTVK+TLGMGDKK
Sbjct: 61 QQKEAAGFLQQTGEKMVNMAQGAVDTVKDTLGMGDKK 96

BLAST of MELO3C023065.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SQZ2 (Late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00540 PE=4 SV=1)

HSP 1 Score: 186 bits (472), Expect = 1.62e-59
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60
          MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR
Sbjct: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60

Query: 61 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96
          DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 61 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

BLAST of MELO3C023065.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CCL5 (late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1)

HSP 1 Score: 186 bits (472), Expect = 7.48e-59
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1   MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60
           MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR
Sbjct: 49  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 108

Query: 61  DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96
           DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 109 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 144

BLAST of MELO3C023065.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LI39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1)

HSP 1 Score: 174 bits (441), Expect = 8.68e-55
Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60
          MSNMQQSLNAGQTKGQTQ RTEEWMEATKLGPT+EP DMSSNSAQAQLCANSAQHSTHQ 
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60

Query: 61 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96
          DQEP S LQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

BLAST of MELO3C023065.jh1 vs. ExPASy TrEMBL
Match: A0A1S4E2Z2 (late embryogenesis abundant protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 1.86e-47
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0

Query: 13 TKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTG 72
          T+ + +ARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTG
Sbjct: 2  TQEKIEARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTG 61

Query: 73 EKMVHMAQGAVDTVKETLGMGDKK 96
          EKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 62 EKMVHMAQGAVDTVKETLGMGDKK 85

BLAST of MELO3C023065.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CAZ0 (late embryogenesis abundant protein 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009834 PE=4 SV=1)

HSP 1 Score: 115 bits (288), Expect = 1.84e-31
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 0

Query: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60
          MSN+QQSLNAGQTKGQTQARTEEWMEATK   T E     SNSAQ     +   +S HQ+
Sbjct: 1  MSNIQQSLNAGQTKGQTQARTEEWMEATK-NTTHELNSSDSNSAQLSAQPHQQSNSPHQQ 60

Query: 61 DQ-EPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96
           Q E   FLQQTGEKMV+MAQGAVDTVK+TLGMGDKK
Sbjct: 61 QQKEAAGFLQQTGEKMVNMAQGAVDTVKDTLGMGDKK 96

BLAST of MELO3C023065.jh1 vs. TAIR 10
Match: AT4G13560.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 54.3 bits (129), Expect = 6.3e-08
Identity = 37/107 (34.58%), Postives = 54/107 (50.47%), Query Frame = 0

Query: 5   QQSLNAGQTKGQTQARTEEWMEATK----------LGPTSEPRDMSSNSAQAQL-----C 64
           QQ  NAGQ +GQ Q + E+W E+ K             T   RD +++  Q+        
Sbjct: 3   QQQFNAGQNRGQAQEKAEQWTESAKQTAQSACDKTADLTQSARDKAADLTQSARDKTADG 62

Query: 65  ANSAQHSTHQRDQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
           ++SA  S     ++      QTGE + +MAQGA+D VK +LGM +KK
Sbjct: 63  SHSANKSAQHNQEQAAGLFGQTGESVKNMAQGALDGVKNSLGMNEKK 109

BLAST of MELO3C023065.jh1 vs. TAIR 10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related )

HSP 1 Score: 42.4 bits (98), Expect = 2.5e-04
Identity = 32/96 (33.33%), Postives = 50/96 (52.08%), Query Frame = 0

Query: 2  SNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRD 61
          S+ Q S +AG+  GQ Q + EE++        +      + +A     + S  HS H ++
Sbjct: 3  SSQQLSHSAGEVTGQVQLKKEEYL--------NNVSHAMNQNADHHTHSQSQLHSEHDQN 62

Query: 62 -----QEPTSFLQQTGEKMVHMAQGAVDTVKETLGM 93
                + +S +QQTG ++ +MAQGA D VK TLGM
Sbjct: 63 NPSLISQASSVIQQTGGQVKNMAQGAADAVKNTLGM 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0031971.13.34e-59100.00late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK... [more]
XP_008460707.21.55e-58100.00PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo][more]
XP_011649123.11.79e-5493.75late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetic... [more]
XP_016902588.13.83e-4794.05PREDICTED: late embryogenesis abundant protein 1 isoform X2 [Cucumis melo][more]
XP_022138744.13.79e-3170.10late embryogenesis abundant protein 1-like isoform X2 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SQZ21.62e-59100.00Late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A1S3CCL57.48e-59100.00late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A0A0LI398.68e-5593.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1[more]
A0A1S4E2Z21.86e-4794.05late embryogenesis abundant protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1CAZ01.84e-3170.10late embryogenesis abundant protein 1-like isoform X2 OS=Momordica charantia OX=... [more]
Match NameE-valueIdentityDescription
AT4G13560.16.3e-0834.58Late embryogenesis abundant protein (LEA) family protein [more]
AT1G52680.12.5e-0433.33late embryogenesis abundant protein-related / LEA protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..67
NoneNo IPR availablePANTHERPTHR34191:SF20LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEINcoord: 1..95
IPR039624Stress-induced protein KIN1/KIN2PANTHERPTHR34191LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEINcoord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023065.jh1.t1MELO3C023065.jh1.t1mRNA