MELO3C022940 (gene) Melon (DHL92) v4

Overview


Name	MELO3C022940
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr10: 23449740 .. 23449907 (-)
RNA-Seq Expression	MELO3C022940
Synteny	MELO3C022940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCCGAAGACATGATGGACGCACGACCTGTGAGGTCTAATAGCTGTAGGGCGAGTTCTAGTGGATCAAAGAGGAAGCGTGGAAGACAGACTATCAAGACTATGGTCGTCATTCGCGATGCCATGGATTGTGCGAATGACCAGCTTAGGGTCATTGCGAACTAG

mRNA sequence

ATGTCAGCCGAAGACATGATGGACGCACGACCTGTGAGGTCTAATAGCTGTAGGGCGAGTTCTAGTGGATCAAAGAGGAAGCGTGGAAGACAGACTATCAAGACTATGGTCGTCATTCGCGATGCCATGGATTGTGCGAATGACCAGCTTAGGGTCATTGCGAACTAG

Coding sequence (CDS)

ATGTCAGCCGAAGACATGATGGACGCACGACCTGTGAGGTCTAATAGCTGTAGGGCGAGTTCTAGTGGATCAAAGAGGAAGCGTGGAAGACAGACTATCAAGACTATGGTCGTCATTCGCGATGCCATGGATTGTGCGAATGACCAGCTTAGGGTCATTGCGAACTAG

Protein sequence

MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN

Homology

[Close]

BLAST of MELO3C022940 vs. NCBI nr
Match: KAA0054131.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-15
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 6  MMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVI 54
          MMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLR I
Sbjct: 1  MMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRAI 48

[Close]

BLAST of MELO3C022940 vs. NCBI nr
Match: KAA0056454.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK29071.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 3.2e-06
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA 55
          +S EDMM ARP R N CR SSSGSKRK    TI T+ VI +A+DC ND LR IA
Sbjct: 43 VSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIA 96

[Close]

BLAST of MELO3C022940 vs. NCBI nr
Match: TYK15318.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-06
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 1  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN 56
          MS+EDMM A+P RS+ CR+ SSG KRK   Q ++T+ VIRD M C ND LR I +
Sbjct: 21 MSSEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRDTMKCVNDLLRAIVD 75

[Close]

BLAST of MELO3C022940 vs. NCBI nr
Match: KAA0066582.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 7.8e-05
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 1   MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN 56
           MS EDMM A+P RS+ CR+ SSG KRK   Q ++T+ VIR  M C ND LR I +
Sbjct: 67  MSFEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRGTMKCVNDLLRAIVD 121

[Close]

BLAST of MELO3C022940 vs. NCBI nr
Match: KAA0051928.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12234.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA 55
          MS+ DMM +R  +SN  R+SS+G KRKR  Q  +T  + RDAMD ANDQ+R+IA
Sbjct: 28 MSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIA 81

[Close]

BLAST of MELO3C022940 vs. ExPASy TrEMBL
Match: A0A5A7UKR2 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00470 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.1e-16
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 6  MMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVI 54
          MMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLR I
Sbjct: 1  MMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRAI 48

[Close]

BLAST of MELO3C022940 vs. ExPASy TrEMBL
Match: A0A5A7UMN4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001920 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA 55
          +S EDMM ARP R N CR SSSGSKRK    TI T+ VI +A+DC ND LR IA
Sbjct: 43 VSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIA 96

[Close]

BLAST of MELO3C022940 vs. ExPASy TrEMBL
Match: A0A5D3CVP7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1706G00270 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 1  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN 56
          MS+EDMM A+P RS+ CR+ SSG KRK   Q ++T+ VIRD M C ND LR I +
Sbjct: 21 MSSEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRDTMKCVNDLLRAIVD 75

[Close]

BLAST of MELO3C022940 vs. ExPASy TrEMBL
Match: A0A5A7VE05 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001560 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.8e-05
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 1   MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN 56
           MS EDMM A+P RS+ CR+ SSG KRK   Q ++T+ VIR  M C ND LR I +
Sbjct: 67  MSFEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRGTMKCVNDLLRAIVD 121

[Close]

BLAST of MELO3C022940 vs. ExPASy TrEMBL
Match: A0A5D3CM76 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00400 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1  MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA 55
          MS+ DMM +R  +SN  R+SS+G KRKR  Q  +T  + RDAMD ANDQ+R+IA
Sbjct: 28 MSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIA 81

The following BLAST results are available for this feature:

BLAST of MELO3C022940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054131.1	1.7e-15	97.92	RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]	[more]
KAA0056454.1	3.2e-06	62.96	retrotransposon protein [Cucumis melo var. makuwa] >TYK29071.1 retrotransposon p...	[more]
TYK15318.1	5.4e-06	56.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066582.1	7.8e-05	54.55	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051928.1	3.9e-04	55.56	retrotransposon protein [Cucumis melo var. makuwa] >TYK12234.1 retrotransposon p...	[more]

BLAST of MELO3C022940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C022940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKR2	8.1e-16	97.92	RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7UMN4	1.5e-06	62.96	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CVP7	2.6e-06	56.36	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VE05	3.8e-05	54.55	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CM76	1.9e-04	55.56	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C022940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022940.1	MELO3C022940.1	mRNA