Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACATTAAGTCAGAAGCCAAGCAATCACACGTTCTTCTTCCACCACAAATTCAAAAACCCAACACAATGCTCAAAGCCACTAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAAAAACCAAACAAAACCCAAACAAATTGCTACCAATATTGCTGCTCTTGCCATTGCTCCTCCTCATCCCATCTGCATCATCAGCCCTCAGCTCCCCCACTTCCGCCATGGCTCAACGAGGATCCCACCTTTCTGCCGCCTCCAACGCAATCGCAATTTGAACATCCAGACAGAGCTGATGGAATGGTGACTAATCAGTGGTCGTACCAGCAGTACTTGGTGGCAGAGCCGGTTTACGGGGTGCCGATCATTGTGAAAACAGAAAGTAGAAGAGATCAGAAATGGAAAAGGTTGATTAAGTTATTTGATTGCTTCTGCCCCTGTTTTGGCATTACACAACAACTTTACTACATACCATAGAAATTTATTTTAGATTTTAGTTTCAACTTATTATGGGATGAATG
mRNA sequence
AAACATTAAGTCAGAAGCCAAGCAATCACACGTTCTTCTTCCACCACAAATTCAAAAACCCAACACAATGCTCAAAGCCACTAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAAAAACCAAACAAAACCCAAACAAATTGCTACCAATATTGCTGCTCTTGCCATTGCTCCTCCTCATCCCATCTGCATCATCAGCCCTCAGCTCCCCCACTTCCGCCATGGCTCAACGAGGATCCCACCTTTCTGCCGCCTCCAACGCAATCGCAATTTGAACATCCAGACAGAGCTGATGGAATGGTGACTAATCAGTGGTCGTACCAGCAGTACTTGGTGGCAGAGCCGGTTTACGGGGTGCCGATCATTGTGAAAACAGAAAGTAGAAGAGATCAGAAATGGAAAAGGTTGATTAAGTTATTTGATTGCTTCTGCCCCTGTTTTGGCATTACACAACAACTTTACTACATACCATAGAAATTTATTTTAGATTTTAGTTTCAACTTATTATGGGATGAATG
Coding sequence (CDS)
ATGCTCAAAGCCACTAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAAAAACCAAACAAAACCCAAACAAATTGCTACCAATATTGCTGCTCTTGCCATTGCTCCTCCTCATCCCATCTGCATCATCAGCCCTCAGCTCCCCCACTTCCGCCATGGCTCAACGAGGATCCCACCTTTCTGCCGCCTCCAACGCAATCGCAATTTGAACATCCAGACAGAGCTGATGGAATGGTGACTAATCAGTGGTCGTACCAGCAGTACTTGGTGGCAGAGCCGGTTTACGGGGTGCCGATCATTGTGAAAACAGAAAGTAGAAGAGATCAGAAATGGAAAAGGTTGATTAAGTTATTTGATTGCTTCTGCCCCTGTTTTGGCATTACACAACAACTTTACTACATACCATAG
Protein sequence
MLKATKKKLKGLWSKMKKKKPNKTQTNCYQYCCSCHCSSSSHLHHQPSAPPLPPWLNEDPTFLPPPTQSQFEHPDRADGMVTNQWSYQQYLVAEPVYGVPIIVKTESRRDQKWKRLIKLFDCFCPCFGITQQLYYIP
Homology
BLAST of MELO3C022933 vs. NCBI nr
Match:
KAA0054146.1 (AUX/IAA protein [Cucumis melo var. makuwa])
HSP 1 Score: 297.4 bits (760), Expect = 6.5e-77
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query: 1 MLKATKKKLKGLWSKMKKKKPNKTQTNCYQYCCSCHCSSSSHLHHQPSAPPLPPWLNEDP 60
MLKATKKKLKGLWSKMKKKKPNKTQTNCYQYCCSCHCSSSSHLHHQPSAPPLPPWLNEDP
Sbjct: 1 MLKATKKKLKGLWSKMKKKKPNKTQTNCYQYCCSCHCSSSSHLHHQPSAPPLPPWLNEDP 60
Query: 61 TFLPPPTQSQFEHPDRADGMVTNQWSYQQYLVAEPVYGVPIIVKTESRRDQKWKRLIKLF 120
TFLPPPTQSQFEHPDRADGMVTNQWSYQQYLVAEPVYGVPIIVKTESRRDQKWKRLIKLF
Sbjct: 61 TFLPPPTQSQFEHPDRADGMVTNQWSYQQYLVAEPVYGVPIIVKTESRRDQKWKRLIKLF 120
Query: 121 DCFCPCFGITQQLYYIP 138
DCFCPCFGITQQLYYIP
Sbjct: 121 DCFCPCFGITQQLYYIP 137
BLAST of MELO3C022933 vs. NCBI nr
Match:
KGN49708.1 (hypothetical protein Csa_018344 [Cucumis sativus])
HSP 1 Score: 237.3 bits (604), Expect = 8.0e-59
Identity = 118/147 (80.27%), Postives = 125/147 (85.03%), Query Frame = 0
Query: 1 MLKATKKKLKGLWSKM----KKKKPNKTQTNCYQYCCSCHCSSSSHLHH--QPSAPPLPP 60
MLKATKKKLKGLWSKM KKKKPN+TQTN YQYCC CHCSSS+H H+ QPSAPPLP
Sbjct: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHNQQQPSAPPLPL 83
Query: 61 WLNEDPTFLPPPTQSQFEHPDRADGM----VTNQWSYQQYLVAEPVYGVPIIVKTESRRD 120
WLN+ PTFLPP TQSQFEHPD AD M V NQWSYQQYLVAEPVYGVPIIV+TES R
Sbjct: 84 WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGRG 143
Query: 121 QKWKRLIKLFDCFCPCFGITQQLYYIP 138
QKWKRLIKLF+C CPCFGITQQLYY+P
Sbjct: 144 QKWKRLIKLFECLCPCFGITQQLYYVP 170
BLAST of MELO3C022933 vs. NCBI nr
Match:
XP_022933064.1 (uncharacterized protein LOC111439771 [Cucurbita moschata])
HSP 1 Score: 99.8 bits (247), Expect = 2.0e-17
Identity = 67/144 (46.53%), Postives = 81/144 (56.25%), Query Frame = 0
Query: 1 MLKATKKKLKGLWSKMKKKK----PNKTQTNCYQYCCSCHCSSSSHLHHQPSAPPLPPWL 60
MLKA KKKLK WS+ KK+K PN C +CC+CHCSS+ QPSAPPLPPWL
Sbjct: 1 MLKAAKKKLK-FWSRSKKRKKIPNPNDFPPPC--HCCTCHCSSAI----QPSAPPLPPWL 60
Query: 61 NEDPTFLPPPTQSQFEHPDRAD--GMVTNQWSYQQYLVAEPVYGVPIIVKTESRRDQKWK 120
D PP EHP+ A+ + YQ Y+ +PVYGVPIIV+T+SRRD
Sbjct: 61 --DDRIFPPS-----EHPEEAEIAAPLVAAPLYQHYMDPDPVYGVPIIVQTDSRRDGSRS 120
Query: 121 RL-----------IKLFDCFCPCF 128
R I++ CFCPCF
Sbjct: 121 RRFAVSGCVGELGIRIIGCFCPCF 130
BLAST of MELO3C022933 vs. NCBI nr
Match:
KAG6601672.1 (hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 99.4 bits (246), Expect = 2.6e-17
Identity = 69/148 (46.62%), Postives = 83/148 (56.08%), Query Frame = 0
Query: 1 MLKATKKKLKGLWSKMKKKK----PN----KTQTNCYQYCCSCHCSSSSHLHHQPSAPPL 60
MLKA KKKLK WS+ KK+K PN C +CC+CHCSS+ QPSAPPL
Sbjct: 1 MLKAAKKKLK-FWSRSKKRKKIPDPNDFTPPPPPPC--HCCTCHCSSAI----QPSAPPL 60
Query: 61 PPWLNEDPTFLPPPTQSQFEHPDRAD--GMVTNQWSYQQYLVAEPVYGVPIIVKTESRRD 120
PPWL D PPP EHP+ A+ + YQQY+ +PVYGVPIIV+T+SRRD
Sbjct: 61 PPWL--DDRIFPPP-----EHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRD 120
Query: 121 QKWKRL-----------IKLFDCFCPCF 128
R I++ CFCPCF
Sbjct: 121 GSRSRRFAVSGCVGDLGIRIIGCFCPCF 134
BLAST of MELO3C022933 vs. NCBI nr
Match:
XP_038684254.1 (uncharacterized protein LOC119984405 [Tripterygium wilfordii])
HSP 1 Score: 78.6 bits (192), Expect = 4.8e-11
Identity = 58/160 (36.25%), Postives = 70/160 (43.75%), Query Frame = 0
Query: 5 TKKKLKGLWSKMKKKKPNKTQTNCYQY--------CCSCHCSSSSHLHHQPSAPPLPPWL 64
T KKLK WSK K+KK KTQ Y Y CC H SSS+ QPSAPPLP WL
Sbjct: 4 TMKKLK-FWSKKKRKKRRKTQDEPYYYPPSTSFHHCCCPHSSSST----QPSAPPLPSWL 63
Query: 65 NEDPTFLPPP-------------------TQSQFEHPDRADGMVTNQWSYQQYLVAEPVY 124
PPP +++ + D N SYQQYLV PVY
Sbjct: 64 E---PLAPPPLFPEVAYSGQARLSSQEIASETNYHRESATDADAANLQSYQQYLVPNPVY 123
Query: 125 GVPIIVKTESRRDQKW------KRLIKLFDCFCPCFGITQ 132
GVP +V R + + + CFCPCF + +
Sbjct: 124 GVPAVVHRPRRERSAGFFGCIVEFGVNVVRCFCPCFRLQE 155
BLAST of MELO3C022933 vs. ExPASy TrEMBL
Match:
A0A5A7UIP5 (AUX/IAA protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00680 PE=4 SV=1)
HSP 1 Score: 297.4 bits (760), Expect = 3.2e-77
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query: 1 MLKATKKKLKGLWSKMKKKKPNKTQTNCYQYCCSCHCSSSSHLHHQPSAPPLPPWLNEDP 60
MLKATKKKLKGLWSKMKKKKPNKTQTNCYQYCCSCHCSSSSHLHHQPSAPPLPPWLNEDP
Sbjct: 1 MLKATKKKLKGLWSKMKKKKPNKTQTNCYQYCCSCHCSSSSHLHHQPSAPPLPPWLNEDP 60
Query: 61 TFLPPPTQSQFEHPDRADGMVTNQWSYQQYLVAEPVYGVPIIVKTESRRDQKWKRLIKLF 120
TFLPPPTQSQFEHPDRADGMVTNQWSYQQYLVAEPVYGVPIIVKTESRRDQKWKRLIKLF
Sbjct: 61 TFLPPPTQSQFEHPDRADGMVTNQWSYQQYLVAEPVYGVPIIVKTESRRDQKWKRLIKLF 120
Query: 121 DCFCPCFGITQQLYYIP 138
DCFCPCFGITQQLYYIP
Sbjct: 121 DCFCPCFGITQQLYYIP 137
BLAST of MELO3C022933 vs. ExPASy TrEMBL
Match:
A0A0A0KJG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1)
HSP 1 Score: 237.3 bits (604), Expect = 3.9e-59
Identity = 118/147 (80.27%), Postives = 125/147 (85.03%), Query Frame = 0
Query: 1 MLKATKKKLKGLWSKM----KKKKPNKTQTNCYQYCCSCHCSSSSHLHH--QPSAPPLPP 60
MLKATKKKLKGLWSKM KKKKPN+TQTN YQYCC CHCSSS+H H+ QPSAPPLP
Sbjct: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHNQQQPSAPPLPL 83
Query: 61 WLNEDPTFLPPPTQSQFEHPDRADGM----VTNQWSYQQYLVAEPVYGVPIIVKTESRRD 120
WLN+ PTFLPP TQSQFEHPD AD M V NQWSYQQYLVAEPVYGVPIIV+TES R
Sbjct: 84 WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGRG 143
Query: 121 QKWKRLIKLFDCFCPCFGITQQLYYIP 138
QKWKRLIKLF+C CPCFGITQQLYY+P
Sbjct: 144 QKWKRLIKLFECLCPCFGITQQLYYVP 170
BLAST of MELO3C022933 vs. ExPASy TrEMBL
Match:
A0A6J1EYP6 (uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC111439771 PE=4 SV=1)
HSP 1 Score: 99.8 bits (247), Expect = 9.7e-18
Identity = 67/144 (46.53%), Postives = 81/144 (56.25%), Query Frame = 0
Query: 1 MLKATKKKLKGLWSKMKKKK----PNKTQTNCYQYCCSCHCSSSSHLHHQPSAPPLPPWL 60
MLKA KKKLK WS+ KK+K PN C +CC+CHCSS+ QPSAPPLPPWL
Sbjct: 1 MLKAAKKKLK-FWSRSKKRKKIPNPNDFPPPC--HCCTCHCSSAI----QPSAPPLPPWL 60
Query: 61 NEDPTFLPPPTQSQFEHPDRAD--GMVTNQWSYQQYLVAEPVYGVPIIVKTESRRDQKWK 120
D PP EHP+ A+ + YQ Y+ +PVYGVPIIV+T+SRRD
Sbjct: 61 --DDRIFPPS-----EHPEEAEIAAPLVAAPLYQHYMDPDPVYGVPIIVQTDSRRDGSRS 120
Query: 121 RL-----------IKLFDCFCPCF 128
R I++ CFCPCF
Sbjct: 121 RRFAVSGCVGELGIRIIGCFCPCF 130
BLAST of MELO3C022933 vs. ExPASy TrEMBL
Match:
A0A1R3JL32 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05385 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 3.9e-11
Identity = 64/169 (37.87%), Postives = 86/169 (50.89%), Query Frame = 0
Query: 1 MLKATKKKLKGLWSKMKKKK------PNKTQTNCYQYCCSCHCSSSSHLHHQPSAPPLPP 60
M KA KKLK WS+ K+K+ P+ ++ Y C+ S SS QPSAPPLPP
Sbjct: 3 MFKAV-KKLK-FWSRKKRKRKSLEPPPSYPVSSPYYQYHHCYYSYSS---LQPSAPPLPP 62
Query: 61 WLNEDPT--FLPPPTQS---------------QFEHPDRADGM-VTNQWSYQQYLVAEPV 120
WL E+ T +PPP Q+ QF D +D + T SYQQY+V PV
Sbjct: 63 WLQEELTQDAVPPPDQADEPLSEQEVSYPSLVQFPTEDNSDVVSETESQSYQQYMVPNPV 122
Query: 121 YGVPIIVKTE-----SRRDQKWKRL-------IKLFDCFCPCFGITQQL 134
YGVP++V+ + SRR++ + LF CFCPCF I ++
Sbjct: 123 YGVPVVVQQQKQEAISRRERSTGFFGCVIEFGVSLFRCFCPCFRIRDEV 166
BLAST of MELO3C022933 vs. ExPASy TrEMBL
Match:
A0A7J7CDI3 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW18G00481 PE=4 SV=1)
HSP 1 Score: 77.4 bits (189), Expect = 5.1e-11
Identity = 57/158 (36.08%), Postives = 69/158 (43.67%), Query Frame = 0
Query: 7 KKLKGLWSKMKKKKPNKTQTNCYQY--------CCSCHCSSSSHLHHQPSAPPLPPWLNE 66
KKLK WSK K+KK KTQ Y Y CC H SSS+ QPSAPPLP WL
Sbjct: 2 KKLK-FWSKKKRKKRRKTQDEPYYYPPSTSFHHCCCPHSSSST----QPSAPPLPSWLE- 61
Query: 67 DPTFLPPP-------------------TQSQFEHPDRADGMVTNQWSYQQYLVAEPVYGV 126
PPP +++ + D N SYQQYLV PVYGV
Sbjct: 62 --PLAPPPLFPEVAYSGQARLSSQEIASETNYHRESATDADAANLQSYQQYLVPNPVYGV 121
Query: 127 PIIVKTESRRDQKW------KRLIKLFDCFCPCFGITQ 132
P +V R + + + CFCPCF + +
Sbjct: 122 PAVVHRPRRERSAGFFGCIVEFGVNVVRCFCPCFRLQE 151
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0054146.1 | 6.5e-77 | 100.00 | AUX/IAA protein [Cucumis melo var. makuwa] | [more] |
| KGN49708.1 | 8.0e-59 | 80.27 | hypothetical protein Csa_018344 [Cucumis sativus] | [more] |
| XP_022933064.1 | 2.0e-17 | 46.53 | uncharacterized protein LOC111439771 [Cucurbita moschata] | [more] |
| KAG6601672.1 | 2.6e-17 | 46.62 | hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_038684254.1 | 4.8e-11 | 36.25 | uncharacterized protein LOC119984405 [Tripterygium wilfordii] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UIP5 | 3.2e-77 | 100.00 | AUX/IAA protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G0068... | [more] |
| A0A0A0KJG0 | 3.9e-59 | 80.27 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1 | [more] |
| A0A6J1EYP6 | 9.7e-18 | 46.53 | uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC1114397... | [more] |
| A0A1R3JL32 | 3.9e-11 | 37.87 | Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05385 PE=4 ... | [more] |
| A0A7J7CDI3 | 5.1e-11 | 36.08 | Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW18G00481 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
