MELO3C022919 (gene) Melon (DHL92) v4

Overview


Name	MELO3C022919
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr10: 22870451 .. 22874208 (+)
RNA-Seq Expression	MELO3C022919
Synteny	MELO3C022919

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGGCTGATGAACAACTCTCCCACTACTTCGAGACACTCTCAACAGTTGAGAAGAGTGTGGCATAGCCAAGGCCATGCAGCCAACCATTCGTGTGGCATAGGCCAAGACCACGCGGCTAGCCATGCACGTGAAGCGACATGGCAAAGGGCTAAGGGGCACGCGACATGCACAAGTGCATGAGGTTAGCACGTGGCCAGGCCCCAAGACCCTGCATGACACATTATAAATCTGCTATCTAAGCTTGTGTGCTAGCCATGCCAAAATGCCATTTTGGGGCATTTTTTACATTTTTTAAACTTTTGAGTAAAGTTTGGATAGTTTTTGGATCCAAGGAATTATTTTGGATTTAATTATCATTATTTCAGGTTAAGAGAAAATTGGGCAAATTTATAAGTCAAGGACTTATCTCGTATCTGTGAGTGACAAAATAAATTTCAAATAGAGATTTCTATATGTATTTGCTAGCCAAAAGTTTTAGCTTGCTTTAGTTAAATCCGATTTATAAGTTATTTCTAAAGCATGTAAGGTATTTATAGCTATTTGACAAACATGTATTTACTGAGATATATTTCTAGACTAGTAAAAGGAATTTGATATGAATTCTGGATTTACGAGTTTGCAAATGTTTTAAAAGCATGAGTTATGGTTTGAAATTTGCTAAGTGCAAGAGGATCCTTAACATGTTGAGCTATTGTTTGAAAAGTTCATAATTTTAAGCATACTTTAGTCAATACCAAGTTATTTTGTTATTTTTATAGCCCTGCAGGATAGGTCATTATGCATAGAGGAATTTTAAGGTAGGGGCACATATCTCTAAGGATTTGAGTGGGGATGCCTATCCTTGAGGATGAGTTAGGGATGCCCCATCTCTGAGGTTAGTTCAATAGTATTGATATTACTCTGCTATTGTGGCTGAGGTTTGGATTTGGTATTTATTTAGCTCTGCCATCTCTTGAGGATTTGATTCTTAGGTTATAAACAAGGAAAAGCTAGTGTTTAAGAAATTATTTAAAAATGTTTGTTGAGTTGAATTATTAAGATATTTGCTAAGCTTATGGCTTAAACAGTTTATAGAACGCTTGTTTTAACACTGATCACTCGATGGGGTTTTCAGCTCACCCTTTCAAGTTGTTTTTCCACTTTCATGGTAGAGATTGTATTCTCAAGCCTGAGACACTACAATCACTCTACTAGAGAAGCTTGTCTTTTCTTCAGTATGTTTTCCAATCGCTTCGTACTTAAGTGTATATATGGTCTTCTGAATATGTCTAGGATATAGTTAACTTTGAGTTGTGGGTAGAGAGAGTTGGTTTTTGTAAGTAAGAGAAACTATGGTCTATGTAAGACTATCTTAATGTTCGTTACAATATGGGTTGTGTTCACACGAGATTTCTGATCTTGGTTAACTAGTTTTGAAGATGAACTTTGTAAGCTATTGTCTGATTATTTGACCCATTCTTGTATTGCAGGCTTCGTGAATTGAAACAGCTTGATGAGTACTTTTGTATGTTTATTCATTTTTGTGAATGATGTTCTGTATTCAATTGTTAGTTCTTGAATTTGAGGTCGTTACATTCACAAATATGAATATGTATTTAGTGGAGGAACCTTCTGTTGTACATATACACGTTGGTTATTAATCACGATCTTATATATTATCTTTATACTTTTGAGTTTTCACTTACAATTGTTGGTTGTTTATTTAATTGTATTTTATTATATATAATTCAAGCCAAATAATGTCAGTTTTGCCATCATAAAAACTAGTGTAAATACGACATTAAATGTGTCTTTAATGTCGGTTTAAAAACGACATTAAAGACATCTTTAATGTCGGTTAAAAAACAATTAAAGACATCTTTAATGTCGGTGGAAAAACGACATTAAAGATATCTCATAAACGACATTAAAGATCAACTGACATTAAAGGTCTTCAATAGCACCTTCTAAAATGTCGGTTTATAACCGACATTGAAGGCCTTTAATGTCGGTGTGTAACCAACATTAAAGATGCCTTTAATGTCGGTTATAAACCGACATTAAAGCCCAACCGACATTAAAGACCTTTAATAACGCTCGCAAAGATGTCGGTCGCCAAGTGACATTAAAGGCCTTTAATGTCGGTTTTAAACCGACATTAAAGGCCAGATTTCTTGTAGTGTGAAGAAATTTGGTTTGTGGAGTTGAACTTGTGTTGATGTTGTATTTATGTTGATTTGATGCGATGTGGTTCGATATCTAGGATTTGATCATCTGATTCTCTCTCGGCTGGATGCTTACGCTTGATTTGAGGAAGCGAAACACGTGATGTTCTTGAAGTTGGAGTCTTGGAATAAAGCTTGTATCTTCAAAGGAGCTTCAATCTTCGAGGGTGGTCGACTTCAGGAGTTTGGAAGTTTTCTTGCTCTTGGGAGAATTCTCTCTAAACCTTTTGAATTCAAAAATTTCCAACTCCTCTATTTATAGAGTTCCCTCGTGGGTTTTTATAGACTTGGGCTTGATCTGGTTCATGGACCATAGCCACGGGCTCAATCACATGGATTTGACTCATATTAAATTTTGGGCTAAATTAAGCTTATTTTTTGGCTCAATTGAATTTTAGCCCAAGTAAATAATATTTAATTGAACAAACGTAATTAATTTGATCCAACTGTCATAATAAAGACATGTGACATCATTAGAATCGTCCAACTTGTCTTTAGATTTAATTTGGGACACATGCCAATTTTTAGTTAATCCTAAATATAATTATTTTAGTGAATGACGTGACAATTTGTAATTGGTTTCAAAATTTCTTATTCAATAGGTTGCACTCGAGTTGTTTTAATACTTATTTTTTAGAATTTTGTTATTTTGCTTCTACGAGTTATTCAAGTAAAGATATTAGAAGTAGGGTTAGCATATATTGTTGAGTAGAGAACAATTTTTGTTGGCTTGACACCGTCTCTCGAACTAAGAGAGGAGGCGGTATGGAAAGGGGTGTGACATAGCATCTTTATATTGTATATGCATATGTAGATGTAGAGATGTATATATTTTATTATTTCAAACATCTCATCTACGATCAGACATATATAGTAGTCTTAAGTTATTATAATTTGATTAGAATAGTTTGTGTTTGAGGTGTAGATTATTTTAGTTTGGGTTATAATAATATGTGTTTAGTGGGTAAATTATTTTAGTTTGATAAGAACATAGTAAACATTATAGCAAAAAAAATTAATCGTATTTATCTTTAACAATATATGATTGTTATAGTTCTAGATAATCTTTCACCCAAATGTCACCCTAATAACTAAATAGCTAAATAGAAGAGATAAACTTATCCTCTCCTTAAACTAAATAGCACCGAGTTGAAAGCATATTGGAAAGAAAGGGTAATAAAGTAATTTTAGTGTAGTTGAGGAGAAGGCTGAAAACTGGGAAGAGTGGAAAGGGAAAGTCGGGAGTGGACAATTTGGATCTCTATACTCGAAGAAGGAAAAGGAAATCAGAGCAAGCAATCTTCAATGGCGAATAAGCCTTTGGGATCGACGGGAGAGTTCTTCAGGAGGAGAGATGAATGGAGGAAGCATCCCATGCTTACCAATCAGTTCCGTCATGCCACCCCTGGCCTCGGCATCGCCCTCGTTGCTTTCGGCATCTACCTTGTCGGCGAGCAAGTTTACAACAGGATCAATTCTCCCTCGTCTTCTCACCACCACCATTCCGATGCATCCTCCGCCACCCATTAACTCCTACCGGTGATTTCT

mRNA sequence

ATGGCCAGGCTGATGAACAACTCTCCCACTACTTCGAGACACTCTCAACAGTTGAGAAGAGTGTGGCATAGCCAAGGCCATGCAGCCAACCATTCGTGTGGCATAGGCCAAGACCACGCGGCTAGCCATGCACGTGAAGCGACATGGCAAAGGGCTAAGGGGCACGCGACATGCACAATTGAGGAGAAGGCTGAAAACTGGGAAGAGTGGAAAGGGAAAGTCGGGAGTGGACAATTTGGATCTCTATACTCGAAGAAGGAAAAGGAAATCAGAGCAAGCAATCTTCAATGGCGAATAAGCCTTTGGGATCGACGGGAGAGTTCTTCAGGAGGAGAGATGAATGGAGGAAGCATCCCATGCTTACCAATCAGTTCCGTCATGCCACCCCTGGCCTCGGCATCGCCCTCGTTGCTTTCGGCATCTACCTTGTCGGCGAGCAAGTTTACAACAGGATCAATTCTCCCTCGTCTTCTCACCACCACCATTCCGATGCATCCTCCGCCACCCATTAACTCCTACCGGTGATTTCT

Coding sequence (CDS)

ATGGCCAGGCTGATGAACAACTCTCCCACTACTTCGAGACACTCTCAACAGTTGAGAAGAGTGTGGCATAGCCAAGGCCATGCAGCCAACCATTCGTGTGGCATAGGCCAAGACCACGCGGCTAGCCATGCACGTGAAGCGACATGGCAAAGGGCTAAGGGGCACGCGACATGCACAATTGAGGAGAAGGCTGAAAACTGGGAAGAGTGGAAAGGGAAAGTCGGGAGTGGACAATTTGGATCTCTATACTCGAAGAAGGAAAAGGAAATCAGAGCAAGCAATCTTCAATGGCGAATAAGCCTTTGGGATCGACGGGAGAGTTCTTCAGGAGGAGAGATGAATGGAGGAAGCATCCCATGCTTACCAATCAGTTCCGTCATGCCACCCCTGGCCTCGGCATCGCCCTCGTTGCTTTCGGCATCTACCTTGTCGGCGAGCAAGTTTACAACAGGATCAATTCTCCCTCGTCTTCTCACCACCACCATTCCGATGCATCCTCCGCCACCCATTAACTCCTACCGGTGA

Protein sequence

MARLMNNSPTTSRHSQQLRRVWHSQGHAANHSCGIGQDHAASHAREATWQRAKGHATCTIEEKAENWEEWKGKVGSGQFGSLYSKKEKEIRASNLQWRISLWDRRESSSGGEMNGGSIPCLPISSVMPPLASASPSLLSASTLSASKFTTGSILPRLLTTTIPMHPPPPINSYR

Homology

[Close]

BLAST of MELO3C022919 vs. NCBI nr
Match: KAG6601665.1 (hypothetical protein SDJN03_06898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-14
Identity = 51/64 (79.69%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 111 GEMNGGSIPCLPISSVMPPLASASPSLLSASTLSASKFTTGSILPRLLTTTIPMHPPPPI 170
           GE +GGSI   PISS  P LASASPS LSASTLSASK TTGSILP LLTTT+PMHPPPPI
Sbjct: 99  GETSGGSIRVSPISSDTPLLASASPSSLSASTLSASKSTTGSILPLLLTTTMPMHPPPPI 158

Query: 171 NSYR 175
           N YR
Sbjct: 159 NCYR 162

[Close]

BLAST of MELO3C022919 vs. NCBI nr
Match: XP_008378955.2 (uncharacterized protein LOC103442001 isoform X1 [Malus domestica])

HSP 1 Score: 66.2 bits (160), Expect = 3.1e-07
Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 71  KGKVGSGQFGSLYSKKEKEIRASNLQWRISL-----WDRRESSSGGEMNGGSIPCLPISS 130
           +GK  S    S   + E+EIR SN   +  +     W R+ SSSGG  +GGS PC PISS
Sbjct: 9   RGKFSSHSTNSREPRTEEEIRKSNQSRKKWVGVRRRWGRQGSSSGGGTSGGSTPCFPISS 68

Query: 131 VMPPLASASPSLLSASTLSASKFTTGSIL-----PRLLTTTIPMHPPPPI 171
             P  ASAS SL SASTLSAS+ TT S L     P L+T T+ +   PP+
Sbjct: 69  ATPLPASASLSLHSASTLSASRSTTASSLPPPPPPPLITPTLILSLQPPL 118

[Close]

BLAST of MELO3C022919 vs. NCBI nr
Match: XP_017189519.2 (retinal homeobox protein Rx isoform X2 [Malus domestica])

HSP 1 Score: 66.2 bits (160), Expect = 3.1e-07
Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 71  KGKVGSGQFGSLYSKKEKEIRASNLQWRISL-----WDRRESSSGGEMNGGSIPCLPISS 130
           +GK  S    S   + E+EIR SN   +  +     W R+ SSSGG  +GGS PC PISS
Sbjct: 9   RGKFSSHSTNSREPRTEEEIRKSNQSRKKWVGVRRRWGRQGSSSGGGTSGGSTPCFPISS 68

Query: 131 VMPPLASASPSLLSASTLSASKFTTGSIL-----PRLLTTTIPMHPPPPI 171
             P  ASAS SL SASTLSAS+ TT S L     P L+T T+ +   PP+
Sbjct: 69  ATPLPASASLSLHSASTLSASRSTTASSLPPPPPPPLITPTLILSLQPPL 118

[Close]

BLAST of MELO3C022919 vs. NCBI nr
Match: KAG6597023.1 (hypothetical protein SDJN03_10203, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 8.5e-05
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 127 MPPLASASPSLLSASTLSASKFTTGSILPRLLTTTIPMHPPPPINSYR 175
           MP LASAS SLLSAST SASK+ TGSIL   LT T+ M PPPPINSYR
Sbjct: 1   MPLLASASLSLLSASTFSASKYITGSILLLPLTITMLMLPPPPINSYR 48

The following BLAST results are available for this feature:

BLAST of MELO3C022919 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601665.1	3.4e-14	79.69	hypothetical protein SDJN03_06898, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008378955.2	3.1e-07	46.36	uncharacterized protein LOC103442001 isoform X1 [Malus domestica]	[more]
XP_017189519.2	3.1e-07	46.36	retinal homeobox protein Rx isoform X2 [Malus domestica]	[more]
KAG6597023.1	8.5e-05	75.00	hypothetical protein SDJN03_10203, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MELO3C022919 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C022919 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C022919 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022919.1	MELO3C022919.1	mRNA