MELO3C022597 (gene) Melon (DHL92) v4

Overview


Name	MELO3C022597
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotrans_gag domain-containing protein
Location	chr10: 15834300 .. 15834731 (+)
RNA-Seq Expression	MELO3C022597
Synteny	MELO3C022597

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTAATCGACTCAGAGACTAAACGATGTAGGCGATTTGTGGACGGATTAAGAGGCAAAATCAGAACTCCAGTTGTACCCACTGTAGTAAGAAATGACTATGCGCAATTAGTAGATGCAACCCTACGAGTAGAAAAGAGTATGGGTGTAAAAAGCGCAAGTTCTGGAATAAGCGGAGAAGAAGAAAAAGGAAGTATAGAGAATAAGAAGATTAAGACTATAGTCAGCCAAGAGTCGTGTTGGAGTAGCGATAAAAAACAAAGGTGTAGTGAGTGTGGCAAGAGGCATTCAGGAACTTGTAGGAGAAGGAGTATCACATGTTTCCAATGTCACAAGAAAAAGCATTATAAGAGTGAATTCCAAAGTAAGTTTAAAGAAGACGAAGAAAGATCAACTCAAATAGGGGTGGCATCTCACTCAGTTCAATAG

mRNA sequence

ATGGCACTAATCGACTCAGAGACTAAACGATGTAGGCGATTTGTGGACGGATTAAGAGGCAAAATCAGAACTCCAGTTGTACCCACTGTAGTAAGAAATGACTATGCGCAATTAGTAGATGCAACCCTACGAGTAGAAAAGAGTATGGGTGTAAAAAGCGCAAGTTCTGGAATAAGCGGAGAAGAAGAAAAAGGAAGTATAGAGAATAAGAAGATTAAGACTATAGTCAGCCAAGAGTCGTGTTGGAGTAGCGATAAAAAACAAAGGTGTAGTGAGTGTGGCAAGAGGCATTCAGGAACTTGTAGGAGAAGGAGTATCACATGTTTCCAATGTCACAAGAAAAAGCATTATAAGAGTGAATTCCAAAGTAAGTTTAAAGAAGACGAAGAAAGATCAACTCAAATAGGGGTGGCATCTCACTCAGTTCAATAG

Coding sequence (CDS)

ATGGCACTAATCGACTCAGAGACTAAACGATGTAGGCGATTTGTGGACGGATTAAGAGGCAAAATCAGAACTCCAGTTGTACCCACTGTAGTAAGAAATGACTATGCGCAATTAGTAGATGCAACCCTACGAGTAGAAAAGAGTATGGGTGTAAAAAGCGCAAGTTCTGGAATAAGCGGAGAAGAAGAAAAAGGAAGTATAGAGAATAAGAAGATTAAGACTATAGTCAGCCAAGAGTCGTGTTGGAGTAGCGATAAAAAACAAAGGTGTAGTGAGTGTGGCAAGAGGCATTCAGGAACTTGTAGGAGAAGGAGTATCACATGTTTCCAATGTCACAAGAAAAAGCATTATAAGAGTGAATTCCAAAGTAAGTTTAAAGAAGACGAAGAAAGATCAACTCAAATAGGGGTGGCATCTCACTCAGTTCAATAG

Protein sequence

MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ

Homology

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BLAST of MELO3C022597 vs. NCBI nr
Match: KAA0035974.1 (hypothetical protein E6C27_scaffold56G001830 [Cucumis melo var. makuwa] >TYK30429.1 hypothetical protein E5676_scaffold349G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 281.2 bits (718), Expect = 5.0e-72
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISG 60
           MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISG
Sbjct: 60  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISG 119

Query: 61  EEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSE 120
           EEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSE
Sbjct: 120 EEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSE 179

Query: 121 FQSKFKEDEERSTQIGVASHSVQ 144
           FQSKFKEDEERSTQIGVASHSVQ
Sbjct: 180 FQSKFKEDEERSTQIGVASHSVQ 202

[Close]

BLAST of MELO3C022597 vs. NCBI nr
Match: KAA0062421.1 (hypothetical protein E6C27_scaffold154G002300 [Cucumis melo var. makuwa] >TYK26561.1 hypothetical protein E5676_scaffold313G001620 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 7.6e-28
Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISG 60
           M LID E +RCR+FV GLRGKIRT VVP V+R+DYA LVD  L VEKS+G+K  S  +S 
Sbjct: 34  MTLIDYEAERCRQFVRGLRGKIRTSVVPIVIRSDYAYLVDVALWVEKSLGMKRPSYELS- 93

Query: 61  EEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCF 110
           EEE GS+E KK KTIVSQ S W+SD+K +C +CG+ H G CRRRSI C+
Sbjct: 94  EEESGSVETKKAKTIVSQGSHWTSDQKPQCRDCGRTHMGICRRRSIACY 141

[Close]

BLAST of MELO3C022597 vs. NCBI nr
Match: KAA0056429.1 (hypothetical protein E6C27_scaffold186G001860 [Cucumis melo var. makuwa] >TYK29093.1 hypothetical protein E5676_scaffold120G002250 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 3.6e-17
Identity = 53/93 (56.99%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 40  DATLRVEKSMGVKSASSGISGEEEKGSIEN-KKIKTIVSQESCWSSDKKQRCSECGKRHS 99
           +A L+VEKS+ +K  SS +S EEE+ +I N KK KT++SQ S W  D+KQ+C++ G+RH+
Sbjct: 60  NAALQVEKSLNIKRPSSELSREEERETIRNPKKSKTMISQGSRWDDDQKQKCNDSGRRHA 119

Query: 100 GTCRRRSITCFQCHKKKHYKSEFQSKFKEDEER 132
             CRR+SITC Q  +K HYKSE+QSKF EDEER
Sbjct: 120 RICRRKSITCHQYGEKGHYKSEYQSKFGEDEER 152

[Close]

BLAST of MELO3C022597 vs. NCBI nr
Match: TYK18871.1 (hypothetical protein E5676_scaffold204G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-11
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1   MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISG 60
           M LI SETKRCR F++GLRG+IRTPVVP  VR+ Y QLV A LRVEKS+GV+  SS +  
Sbjct: 87  MVLIASETKRCRPFLNGLRGEIRTPVVPIAVRSVYVQLVIAALRVEKSLGVRRPSSRVGR 146

Query: 61  EE 63
           EE
Sbjct: 147 EE 148

[Close]

BLAST of MELO3C022597 vs. NCBI nr
Match: TYK26473.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 3   LIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVK---------- 62
           ++ SE+ RCRRF  GL  +IRTPV       +++QLV+  LRVE+++  +          
Sbjct: 98  IVASESDRCRRFERGLHFEIRTPVTAIAKWTNFSQLVETALRVEQTITEEKSAVELSRGT 157

Query: 63  SASSGISGEEEK---GSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCF 121
           S +SG  G E +     I    +++   Q+S  S+ ++ RC+ CG+ H G C   +  C+
Sbjct: 158 STASGFKGREHRRFTPGINISSLRSKPGQKSIASTVRRTRCTSCGRNHRGQCLVGAGVCY 217

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BLAST of MELO3C022597 vs. ExPASy TrEMBL
Match: A0A5D3E3Q3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00360 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISG 60
           MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISG
Sbjct: 60  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISG 119

Query: 61  EEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSE 120
           EEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSE
Sbjct: 120 EEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSE 179

Query: 121 FQSKFKEDEERSTQIGVASHSVQ 144
           FQSKFKEDEERSTQIGVASHSVQ
Sbjct: 180 FQSKFKEDEERSTQIGVASHSVQ 202

[Close]

BLAST of MELO3C022597 vs. ExPASy TrEMBL
Match: A0A5D3DS44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001620 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.7e-28
Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISG 60
           M LID E +RCR+FV GLRGKIRT VVP V+R+DYA LVD  L VEKS+G+K  S  +S 
Sbjct: 34  MTLIDYEAERCRQFVRGLRGKIRTSVVPIVIRSDYAYLVDVALWVEKSLGMKRPSYELS- 93

Query: 61  EEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCF 110
           EEE GS+E KK KTIVSQ S W+SD+K +C +CG+ H G CRRRSI C+
Sbjct: 94  EEESGSVETKKAKTIVSQGSHWTSDQKPQCRDCGRTHMGICRRRSIACY 141

[Close]

BLAST of MELO3C022597 vs. ExPASy TrEMBL
Match: A0A5D3DZA3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002250 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17
Identity = 53/93 (56.99%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 40  DATLRVEKSMGVKSASSGISGEEEKGSIEN-KKIKTIVSQESCWSSDKKQRCSECGKRHS 99
           +A L+VEKS+ +K  SS +S EEE+ +I N KK KT++SQ S W  D+KQ+C++ G+RH+
Sbjct: 60  NAALQVEKSLNIKRPSSELSREEERETIRNPKKSKTMISQGSRWDDDQKQKCNDSGRRHA 119

Query: 100 GTCRRRSITCFQCHKKKHYKSEFQSKFKEDEER 132
             CRR+SITC Q  +K HYKSE+QSKF EDEER
Sbjct: 120 RICRRKSITCHQYGEKGHYKSEYQSKFGEDEER 152

[Close]

BLAST of MELO3C022597 vs. ExPASy TrEMBL
Match: A0A5D3D5N9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00730 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.3e-12
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1   MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISG 60
           M LI SETKRCR F++GLRG+IRTPVVP  VR+ Y QLV A LRVEKS+GV+  SS +  
Sbjct: 87  MVLIASETKRCRPFLNGLRGEIRTPVVPIAVRSVYVQLVIAALRVEKSLGVRRPSSRVGR 146

Query: 61  EE 63
           EE
Sbjct: 147 EE 148

[Close]

BLAST of MELO3C022597 vs. ExPASy TrEMBL
Match: A0A5D3DSB4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00380 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.5e-09
Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 3   LIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVK---------- 62
           ++ SE+ RCRRF  GL  +IRTPV       +++QLV+  LRVE+++  +          
Sbjct: 98  IVASESDRCRRFERGLHFEIRTPVTAIAKWTNFSQLVETALRVEQTITEEKSAVELSRGT 157

Query: 63  SASSGISGEEEK---GSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCF 121
           S +SG  G E +     I    +++   Q+S  S+ ++ RC+ CG+ H G C   +  C+
Sbjct: 158 STASGFKGREHRRFTPGINISSLRSKPGQKSIASTVRRTRCTSCGRNHRGQCLVGAGVCY 217

The following BLAST results are available for this feature:

BLAST of MELO3C022597 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035974.1	5.0e-72	100.00	hypothetical protein E6C27_scaffold56G001830 [Cucumis melo var. makuwa] >TYK3042...	[more]
KAA0062421.1	7.6e-28	63.30	hypothetical protein E6C27_scaffold154G002300 [Cucumis melo var. makuwa] >TYK265...	[more]
KAA0056429.1	3.6e-17	56.99	hypothetical protein E6C27_scaffold186G001860 [Cucumis melo var. makuwa] >TYK290...	[more]
TYK18871.1	1.7e-11	66.13	hypothetical protein E5676_scaffold204G00730 [Cucumis melo var. makuwa]	[more]
TYK26473.1	1.4e-08	32.06	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C022597 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C022597 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E3Q3	2.4e-72	100.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DS44	3.7e-28	63.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DZA3	1.7e-17	56.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D5N9	8.3e-12	66.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DSB4	6.5e-09	32.06	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of MELO3C022597 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022597.1	MELO3C022597.1	mRNA