MELO3C022370 (gene) Melon (DHL92) v4

Overview


Name	MELO3C022370
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	U2 small nuclear ribonucleoprotein A'
Location	chr11: 30752471 .. 30757353 (-)
RNA-Seq Expression	MELO3C022370
Synteny	MELO3C022370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGGATCCACGCACCGGTCTTTTGGTGTCGTTCCTCGTCGATGCCTTCCCTTCCCTTCTCTTCCTCCTAAAGCCCTAAACCCCATCGTCGTCGTTCTGGTCGTCGTCGAAGAAGAAGAAGAAGAAGAAGATGGTGAGACTGACGGTCGATTTAATCTGGAAAAGTCCTCATTTCTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTTCTCTATCTTTTCTCAACTCTTCCTTCTTTCACTCTCTCCATCACACATTTCCTTCTTCACTCCTTTCTTCTTCTCTCCAGGTAACAAGATAGCGGTGATAGAAAACCTAGGTGCCACCGAGGTGAGTCATTCCCACTGCCTCCTTACTGTCTCTTTGTTTTAAATCTCTGGAACTCGAACATAGATTTAAATTATCTTTACATGCTGGCGAGAATCTTTCTACAGAATTCAACTTCACTTCAAATGAGTAATTATAGTTCCCATTTTCTCTATACCATTGTGAAGTTTGTTTGAAAGTTTCATTTTCCTTGAAGACAGCCTAGTAAATTCCAATTTGAGGCCATATGCTGTGCATTTTCCCTTGAGTCATTCAAGCTTTAAATTTTATCATATTGAGGATTCAATTGTCCCTTTCAACCACAAGGATGAGATTTGAGTACTAATTGTTTTCTTACCATAGAATTATGGCTATATGGAAAGTGATGACCTCCTTTGCCTTCTATCTTGAGTAATTACACTTCTGTAGGCCATAAATATACCCAGACCTGTTAAGGAACTTACTGGTGTAAACCAGTTAGTATTTTTCTCTTGACTCAAAATTGTGCCCTTTACAGATAGGACTAGTATTTATACTAGTCTTTCTCTTAACGAAAAATAGCGAGCTTAACTAACTATTCTAACAGCTAACAACCAACTTTCCCAACATCCATATCAACTGAAAATTTACCCAATCACATCACTCACGTTCCAAAATAAGCTCCACAGGAGCAGAACACAACTGGATTAATTAGAGTCGAGCAGTTATTGTTGTTTTGTATAAAAAACAATAATAGTAAAATTGGAGTCAACCTTGAAGTTAACTAACATATGAGAAAAGAGGCCGTCTGAATCAAGTTTCCAGAGCAGTCCATCCTTATAAGTGCCTAGCTTTATCAGATTGAGCTTAAGAGAGAAAAGGATGCACTCTTTAATTTTCGATTTCCTAGTCTCCTCCTCAAGCCTACATCCCAAAGACTCCTCTTTCTGTAGATTCTTATGGAGAGCTACTTCGGTTTTTTGGATCATTAGTATTTTGAAAGAAATAGGAGTGTCTATCAATGGACCTTGGGTTTTGACAACTCATGGCTAACAATCAACTCCGTGATCATGACCTTCTACATTTGGGAGCCATCAAATGGGATAAGAACATCATTTACTCCATAAAACTTCTACAACAGTGCCACTATATCTTTAAGGTTAAATTGCATACATCTAAACTATTCTCCTATTAAAATGGACTGATACACCAAGAAGGTTGCGCCAACAGACACTTGGTTACAACACCATAATATTTTTTACTTGAAGTGCTTTCTCATCTAAACTCATAAGTTTCCCCTTTATCTGTTTGTTCGGGGATAAAATGATTGGCAATTTATCTTGCTTTCACAAAAATGAAAGAAAATGGTGTCTGTTCTTTGTTTCCTTTTATTTTCTAGACATATAATGGTAGCTTTTCCGACCAAAAATTTCAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATCAATCCAAATATTGGAGGTGAGCTTTCCATTATGCCTTCATAGGATTATATAGGCGCCGTATGGTAACCATTTTTGTTCTGTGTTCTTTTCGAAATATTATGCTTTTTTACTCTCAAAATTTTGTTTTGGTGAGTTTTCCACCTTTCTTGAGAACACATTTGAAGTCTAAATCAAAATTCAAAAACAAAATCAAGATTTTAAAAACTACTCATTTAACTTTTAAAAAATTTTCTTGGCTTTTTTAAAACGATATTTAAGTGCAGGTGATGGAATAAGGAAATTATATATAAAAGTAGTGTTTACAAGCTTAATTTTCAAAAATAAGAAACCAAAAAACTAAAATGGTTATTTAATGGGCTAGCAGTATTATTTTTGAAATTATGTTCTTAAAAAATCAATTGTCTTTGTTCATTTCAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAATTATCGATTGTATGTCATTCACAAGTTGAAGTCGGTCCGCGTGCTTGATTTCAAGAAAGTCAGAAACAAGGTAACTTTTTCCTGCTTTCAGACCTTACTATTTAAGGAATGGCTATAATTCTGTGCTTGTTTCTGCATTTTACATCAACAATCCCGAAACATTTAGATGACAATCTCAGGTTTGTTTCAAAAATTTTAGAGCCGATGGTGTATTTTGAAAATGTTGTAACTTTTAGTATTTGCAAGTATGTAGACATTGAGTTTTCTTATTGTATTTAATATGATATTTGACTCTAAGTTGTGCTTTGATTGCGATAGTTCTTAAAAAAATTTTAAGTTCTTGCTATTTTTAAAAATACATATATTATGCAATCCATGTTCTATTGTTTATTAGAGACTAAAGAGTACATGTTTCCTGCACATGATAAATGTGCATATGCTCTTATGTTAATACCTGAAGAATTCAAATGAATTCAGTTTTAATGTCCAGCTATTTATTATTAACAATCATGTGCCTGAGAATTAGTTTTTTGGCTAGAAAAATAAGAAGTAAAAATACTGAAGGAGTGCCTATAAATAGAATTGAACTTTATTCTATTAGAGTAGAACATCCGTGGACATCTAGGATGTTCACGTGTAAGAGTCACTATTTTTGGACAAGTAGGGTTCCACTCTACTTCATTCAACTCCGATTCAATGTGTATGCTTGGTTTAGAGTCTAATTTTATTCTTGAATCTAATTGGTGAGTTTATACAAAAATTTCCTGTTGTGACGGACTTTGGTTACTAGATAACCAATGCCTACTGCATCTCTTCATTTCTAAATGTGAAATGACAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAAGCAAAGAAGGAATCTGTGAAGACATTCGTTTCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCGCCAACACCGGAGCAAATTATAGCTATAAAGGTGTGTACTTTATATAAAAAATTTAAGTTCACCTGCCTTTTTGTTTGGAGAAAGGTCAAGTTCTAAAACTCTTAGGGTAAAATGCACTTTCGGTCCGGAGTTCGGAGTCAATTTGCTAGAAAAAAATTGCTGAAGTTTCAAAACAGACATTTTAATTCATGAGGTCTAGTAAATAGTTCTATATAGTCCTTGACATTTTAATTCATAATGCTTACATGTGAAAATGTTGATTAATCTTTTAAGTGAGATGGGGGGACGACAATGTCTACAGAAGAAAAAGGGAGAATGGAGATAAAGGAAGGGAAATAAAATATTGCTTACTCGTCATTTTTTCCTTGGTCAATTAACAGTGGTTTTTGTTAAAACTCAAAAGACAAAAATTGTATTTTTCCGAACCTCTTTTGTTGACTACCATTTCCTCATCCCTAAAAGTATAACAAGAAATTTATTTTTAGGGATTAAAAATTCCAATGGTAAATAGTAACATTCCTGATATGGGATCACCTAATATATTAGTGTATGCCAACTCGATTGATTTGTTCTTGGACATTTATGTGATCTTTTCAAATACACGGAATTAATTCCTTTAGTTTGATCTGCATTGGTTTATTTGCACTTGGCTTTTAAAGAAGTGTTTCACCATCACATGTTTCCTACAACATCTTCTGATCAATCCATTCTTTACGTTACAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGTATGCTTCGTTTTTTTTTTTTGTCTTCTACAGACCCTCCCTCCTCAAAAGGAAAATGCAGGAGAAAAATCTCTATTTAAATGTTATGGGAATAATAACGTTGGAAAATTCTTTGTTGGCACAGGCGCTTAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGATAATACCGCACCAAACATCACAAAAGATAAAGATGATAAGACAACGTCTGGTAGCGGAGATGAAGAACATGTAACGAATGATGAATCTACACCTATGGAGCAGGTACCACAAACCTTTATGCCTTCGATCGGTTGTTTTCTCTCACGTTTTTTTTGAGCATATTTCTTTTTTATATGTATATCATGTATGTTATTCATTGTTCTGTTTGTGGTTGTAGGAATAATAGTAGAAAATTATTGCTGTGACTACTGTGGTGGCTCATCTATAAGTATTCATCAATGGCGATCCTGTCGTGCTGATTTGTGGACATTTTTTAAAAAACCATTTGAGAAGTCTAAGCATGGCACTTCCCAGCCAGGGGAATGTTAGGCGGATCTTTTGCCTCTCTTTGTAAGAGTTGGGCTCTCTTTTCTTTTCCCTTTATTTCATTTTTCCTTTTTTTTTTCTTTGGGTAAAGAATATTCTAAAAATATGTACGGAGTTTTTGTTTTTGCTGTATTTACAACACTTTGATGGCTTTTGAAATTTCCTTACTTTAAAATATATGTACGATTATTTAGCTT

mRNA sequence

AATGGATCCACGCACCGGTCTTTTGGTGTCGTTCCTCGTCGATGCCTTCCCTTCCCTTCTCTTCCTCCTAAAGCCCTAAACCCCATCGTCGTCGTTCTGGTCGTCGTCGAAGAAGAAGAAGAAGAAGAAGATGGTGAGACTGACGGTCGATTTAATCTGGAAAAGTCCTCATTTCTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCGGTGATAGAAAACCTAGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAATTATCGATTGTATGTCATTCACAAGTTGAAGTCGGTCCGCGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAAGCAAAGAAGGAATCTGTGAAGACATTCGTTTCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCGCCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTTAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGATAATACCGCACCAAACATCACAAAAGATAAAGATGATAAGACAACGTCTGGTAGCGGAGATGAAGAACATGTAACGAATGATGAATCTACACCTATGGAGCAGGAATAATAGTAGAAAATTATTGCTGTGACTACTGTGGTGGCTCATCTATAAGTATTCATCAATGGCGATCCTGTCGTGCTGATTTGTGGACATTTTTTAAAAAACCATTTGAGAAGTCTAAGCATGGCACTTCCCAGCCAGGGGAATGTTAGGCGGATCTTTTGCCTCTCTTTGTAAGAGTTGGGCTCTCTTTTCTTTTCCCTTTATTTCATTTTTCCTTTTTTTTTTCTTTGGGTAAAGAATATTCTAAAAATATGTACGGAGTTTTTGTTTTTGCTGTATTTACAACACTTTGATGGCTTTTGAAATTTCCTTACTTTAAAATATATGTACGATTATTTAGCTT

Coding sequence (CDS)

ATGGTGAGACTGACGGTCGATTTAATCTGGAAAAGTCCTCATTTCTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCGGTGATAGAAAACCTAGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAATTATCGATTGTATGTCATTCACAAGTTGAAGTCGGTCCGCGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAAGCAAAGAAGGAATCTGTGAAGACATTCGTTTCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCGCCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTTAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGATAATACCGCACCAAACATCACAAAAGATAAAGATGATAAGACAACGTCTGGTAGCGGAGATGAAGAACATGTAACGAATGATGAATCTACACCTATGGAGCAGGAATAA

Protein sequence

MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE

Homology

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BLAST of MELO3C022370 vs. ExPASy Swiss-Prot
Match: P43333 (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana OX=3702 GN=At1g09760 PE=2 SV=2)

HSP 1 Score: 355.9 bits (912), Expect = 4.1e-97
Identity = 191/239 (79.92%), Postives = 209/239 (87.45%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRLVNLVEIDPLAS+ KLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             EV+K S+  E  +TP V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

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BLAST of MELO3C022370 vs. ExPASy Swiss-Prot
Match: P09661 (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=2)

HSP 1 Score: 211.1 bits (536), Expect = 1.6e-53
Identity = 127/238 (53.36%), Postives = 161/238 (67.65%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVSGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
           F  G    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

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BLAST of MELO3C022370 vs. ExPASy Swiss-Prot
Match: Q4R8Y8 (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.6e-53
Identity = 127/238 (53.36%), Postives = 161/238 (67.65%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVSGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
           F  G    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

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BLAST of MELO3C022370 vs. ExPASy Swiss-Prot
Match: P57784 (U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV=2)

HSP 1 Score: 206.8 bits (525), Expect = 3.1e-52
Identity = 133/267 (49.81%), Postives = 172/267 (64.42%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVSGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPAD 240
           F  G    A  P ++K+      P+   + AIK AI N+ TL EV RL+  L+SGQ+P  
Sbjct: 181 FNPG----AGLPTDKKK----GGPSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIPG- 240

Query: 241 LNLLEDNTAPNITKD---KDDKTTSGS 263
               E  + P+   +   +DD  T+GS
Sbjct: 241 ---RERRSGPSDEGEEEIEDDTVTNGS 255

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BLAST of MELO3C022370 vs. ExPASy Swiss-Prot
Match: Q9BLB6 (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans OX=6239 GN=mog-2 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.7e-45
Identity = 109/238 (45.80%), Postives = 153/238 (64.29%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N 
Sbjct: 1   MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           P  +RL TL ++NNRI  I P+I   LPNL TL LTNN +  L +I+PLA   KL++++ 
Sbjct: 61  PTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTF 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKT 180
           + N IT K NYR+Y+I+KL +VRV+DF +VR  ER  A+ +F  K  ++  +A ++SV T
Sbjct: 121 IGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKSVHT 180

Query: 181 FVSGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
               E+E       E  +   +  T E    IK AI N+++L EV  L+  L SG++P
Sbjct: 181 EDPSEIEP-----NENSSGGGARLTDEDREKIKEAIKNAKSLSEVNYLQSILASGKVP 233

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BLAST of MELO3C022370 vs. NCBI nr
Match: XP_008459932.1 (PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo] >ADN33688.1 u2 small nuclear ribonucleoprotein a [Cucumis melo subsp. melo])

HSP 1 Score: 521.2 bits (1341), Expect = 5.7e-144
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 280
           LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 279

[Close]

BLAST of MELO3C022370 vs. NCBI nr
Match: XP_004140564.3 (U2 small nuclear ribonucleoprotein A' [Cucumis sativus] >KAE8646748.1 hypothetical protein Csa_005755 [Cucumis sativus])

HSP 1 Score: 511.1 bits (1315), Expect = 5.8e-141
Identity = 275/279 (98.57%), Postives = 275/279 (98.57%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 280
           LLEDNTA NITKDKDDKT S SGDEEHVTNDESTPMEQE
Sbjct: 241 LLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 279

[Close]

BLAST of MELO3C022370 vs. NCBI nr
Match: XP_023005060.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita maxima])

HSP 1 Score: 478.0 bits (1229), Expect = 5.5e-131
Identity = 261/286 (91.26%), Postives = 266/286 (93.01%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVE ASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE 280
           LLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQE
Sbjct: 241 LLEDNTVTNTTKDTDDKTVSDGGDEENVSKDAKEQSNDESTPMEQE 286

[Close]

BLAST of MELO3C022370 vs. NCBI nr
Match: XP_022960458.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita moschata] >XP_023514252.1 U2 small nuclear ribonucleoprotein A' [Cucurbita pepo subsp. pepo] >KAG6592834.1 U2 small nuclear ribonucleoprotein A', partial [Cucurbita argyrosperma subsp. sororia] >KAG7025241.1 U2 small nuclear ribonucleoprotein A', partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 477.6 bits (1228), Expect = 7.2e-131
Identity = 261/286 (91.26%), Postives = 266/286 (93.01%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVE ASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE 280
           LLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQE
Sbjct: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQE 286

[Close]

BLAST of MELO3C022370 vs. NCBI nr
Match: XP_038907085.1 (U2 small nuclear ribonucleoprotein A' [Benincasa hispida])

HSP 1 Score: 477.6 bits (1228), Expect = 7.2e-131
Identity = 262/286 (91.61%), Postives = 266/286 (93.01%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVK FV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKMFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVE ASKPVEEKQT NVSAPT EQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSNVSAPTAEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE 280
           LL+DNT PN TK+ DDKT S SGDEE+V       +NDE TPMEQE
Sbjct: 241 LLDDNTVPNTTKNTDDKTMSDSGDEENVSKDVKEQSNDEPTPMEQE 286

[Close]

BLAST of MELO3C022370 vs. ExPASy TrEMBL
Match: E5GB46 (U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 2.7e-144
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 280
           LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 279

[Close]

BLAST of MELO3C022370 vs. ExPASy TrEMBL
Match: A0A1S3CAU7 (U2 small nuclear ribonucleoprotein A' OS=Cucumis melo OX=3656 GN=LOC103498903 PE=3 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 2.7e-144
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 280
           LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 279

[Close]

BLAST of MELO3C022370 vs. ExPASy TrEMBL
Match: A0A6J1KWC8 (U2 small nuclear ribonucleoprotein A' OS=Cucurbita maxima OX=3661 GN=LOC111498166 PE=3 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 2.7e-131
Identity = 261/286 (91.26%), Postives = 266/286 (93.01%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVE ASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE 280
           LLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQE
Sbjct: 241 LLEDNTVTNTTKDTDDKTVSDGGDEENVSKDAKEQSNDESTPMEQE 286

[Close]

BLAST of MELO3C022370 vs. ExPASy TrEMBL
Match: A0A6J1H905 (U2 small nuclear ribonucleoprotein A' OS=Cucurbita moschata OX=3662 GN=LOC111461186 PE=3 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 3.5e-131
Identity = 261/286 (91.26%), Postives = 266/286 (93.01%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVE ASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE 280
           LLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQE
Sbjct: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQE 286

[Close]

BLAST of MELO3C022370 vs. ExPASy TrEMBL
Match: A0A6J1D6P1 (U2 small nuclear ribonucleoprotein A' OS=Momordica charantia OX=3673 GN=LOC111017441 PE=3 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.6e-128
Identity = 256/285 (89.82%), Postives = 262/285 (91.93%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVE ASKP EEKQT NVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPAEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVT-------NDESTPMEQ 279
           LLEDNT  N TKD DD+T S   DE++V+       NDES PMEQ
Sbjct: 241 LLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ 285

[Close]

BLAST of MELO3C022370 vs. TAIR 10
Match: AT1G09760.1 (U2 small nuclear ribonucleoprotein A )

HSP 1 Score: 355.9 bits (912), Expect = 2.9e-98
Identity = 191/239 (79.92%), Postives = 209/239 (87.45%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRLVNLVEIDPLAS+ KLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             EV+K S+  E  +TP V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

The following BLAST results are available for this feature:

BLAST of MELO3C022370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P43333	4.1e-97	79.92	U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana OX=3702 GN=At1g097...	[more]
P09661	1.6e-53	53.36	U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=...	[more]
Q4R8Y8	1.6e-53	53.36	U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 P...	[more]
P57784	3.1e-52	49.81	U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV...	[more]
Q9BLB6	3.7e-45	45.80	Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans OX=6239...	[more]

BLAST of MELO3C022370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459932.1	5.7e-144	100.00	PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo] >ADN33688.1 u2 s...	[more]
XP_004140564.3	5.8e-141	98.57	U2 small nuclear ribonucleoprotein A' [Cucumis sativus] >KAE8646748.1 hypothetic...	[more]
XP_023005060.1	5.5e-131	91.26	U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]	[more]
XP_022960458.1	7.2e-131	91.26	U2 small nuclear ribonucleoprotein A' [Cucurbita moschata] >XP_023514252.1 U2 sm...	[more]
XP_038907085.1	7.2e-131	91.61	U2 small nuclear ribonucleoprotein A' [Benincasa hispida]	[more]

BLAST of MELO3C022370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GB46	2.7e-144	100.00	U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo OX=412675 PE=3 ...	[more]
A0A1S3CAU7	2.7e-144	100.00	U2 small nuclear ribonucleoprotein A' OS=Cucumis melo OX=3656 GN=LOC103498903 PE...	[more]
A0A6J1KWC8	2.7e-131	91.26	U2 small nuclear ribonucleoprotein A' OS=Cucurbita maxima OX=3661 GN=LOC11149816...	[more]
A0A6J1H905	3.5e-131	91.26	U2 small nuclear ribonucleoprotein A' OS=Cucurbita moschata OX=3662 GN=LOC111461...	[more]
A0A6J1D6P1	3.6e-128	89.82	U2 small nuclear ribonucleoprotein A' OS=Momordica charantia OX=3673 GN=LOC11101...	[more]

BLAST of MELO3C022370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09760.1	2.9e-98	79.92	U2 small nuclear ribonucleoprotein A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003603	U2A'/phosphoprotein 32 family A, C-terminal	SMART	SM00446	LRRcap_2	coord: 128..146 e-value: 0.0044 score: 26.2
None	No IPR available	PFAM	PF14580	LRR_9	coord: 1..173 e-value: 1.1E-80 score: 269.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..279
None	No IPR available	PANTHER	PTHR10552:SF8	BNAC08G13840D PROTEIN	coord: 1..241
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 13..158
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 1..176 e-value: 4.0E-48 score: 164.7
IPR044640	U2 small nuclear ribonucleoprotein A'	PANTHER	PTHR10552	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 1..241
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 89..110 score: 7.288416

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022370.1	MELO3C022370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
molecular_function	GO:0005515	protein binding
molecular_function	GO:0030620	U2 snRNA binding