MELO3C021340.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C021340.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionpolyadenylation factor subunit 2-like
Locationchr11: 30346082 .. 30346312 (-)
RNA-Seq ExpressionMELO3C021340.jh1
SyntenyMELO3C021340.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGCCAATGCTTCGACAAAGAAAAAGAAGTTGGGGATGAGTGAAATTCTTGGAATGGGAGCAGGGTTGTTGGTCGGAGGGCTTTTGCTTGGGGAATTGACGGCGGATGCTGGGGCAGCGCGGTCGTTTGATTTATTTTCCCATCTCATGGGCGGTGGAGGAATGGATTACGATGCAAGCATGCAACCTATGTCTGATAGTATCGATCTGCTCGATACCATTGGGTGA

mRNA sequence

ATGCTTGCCAATGCTTCGACAAAGAAAAAGAAGTTGGGGATGAGTGAAATTCTTGGAATGGGAGCAGGGTTGTTGGTCGGAGGGCTTTTGCTTGGGGAATTGACGGCGGATGCTGGGGCAGCGCGGTCGTTTGATTTATTTTCCCATCTCATGGGCGGTGGAGGAATGGATTACGATGCAAGCATGCAACCTATGTCTGATAGTATCGATCTGCTCGATACCATTGGGTGA

Coding sequence (CDS)

ATGCTTGCCAATGCTTCGACAAAGAAAAAGAAGTTGGGGATGAGTGAAATTCTTGGAATGGGAGCAGGGTTGTTGGTCGGAGGGCTTTTGCTTGGGGAATTGACGGCGGATGCTGGGGCAGCGCGGTCGTTTGATTTATTTTCCCATCTCATGGGCGGTGGAGGAATGGATTACGATGCAAGCATGCAACCTATGTCTGATAGTATCGATCTGCTCGATACCATTGGGTGA

Protein sequence

MLANASTKKKKLGMSEILGMGAGLLVGGLLLGELTADAGAARSFDLFSHLMGGGGMDYDASMQPMSDSIDLLDTIG
Homology
BLAST of MELO3C021340.jh1 vs. NCBI nr
Match: XP_038875072.1 (formin-like protein 20 [Benincasa hispida])

HSP 1 Score: 102 bits (253), Expect = 3.20e-25
Identity = 58/74 (78.38%), Postives = 61/74 (82.43%), Query Frame = 0

Query: 4   NASTKKKKLGMSEILGMGAGLLVGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDYDASM 63
           NA TKKKK GMS+ILGMGAGL VGGLLLGEL AD GA   SFDLFS   GGGG+DYDASM
Sbjct: 103 NAPTKKKKSGMSKILGMGAGL-VGGLLLGELAADGGAVTPSFDLFSDPTGGGGLDYDASM 162

Query: 64  QPMSDSIDLLDTIG 76
           Q MSDS+DLL TIG
Sbjct: 163 QSMSDSMDLLGTIG 175

BLAST of MELO3C021340.jh1 vs. NCBI nr
Match: XP_022959345.1 (protein SRC2-like [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 2.59e-14
Identity = 48/76 (63.16%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 6   STKKKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DA 65
           +T KKK GMS++LG+GAGLL   VGGLLLG+  ADAGAA  SF+ FS   GGG     DA
Sbjct: 110 TTGKKKKGMSKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFEFFSDATGGGFDQLCDA 169

Query: 66  SMQPMSDSIDLLDTIG 76
            MQ  SDSIDLL TIG
Sbjct: 170 RMQSASDSIDLLGTIG 185

BLAST of MELO3C021340.jh1 vs. NCBI nr
Match: XP_023006250.1 (polyadenylation factor subunit 2-like [Cucurbita maxima])

HSP 1 Score: 74.3 bits (181), Expect = 2.59e-14
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 6   STKKKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DA 65
           +T KKK G S++LG+GAGLL   VGGLLLG+  ADAGAA  SF+LFS   GGG     DA
Sbjct: 110 TTGKKKKGKSKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFELFSDATGGGFDQLCDA 169

Query: 66  SMQPMSDSIDLLDTIG 76
            MQ +SDSIDLL TIG
Sbjct: 170 RMQSVSDSIDLLGTIG 185

BLAST of MELO3C021340.jh1 vs. NCBI nr
Match: KAG6575060.1 (hypothetical protein SDJN03_25699, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 5.15e-14
Identity = 48/76 (63.16%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 6   STKKKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DA 65
           +T KKK G S++LG+GAGLL   VGGLLLG+  ADAGAA  SF+LFS   GGG     DA
Sbjct: 110 TTGKKKKGKSKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFELFSDATGGGFDQLCDA 169

Query: 66  SMQPMSDSIDLLDTIG 76
            MQ  SDSIDLL TIG
Sbjct: 170 RMQSASDSIDLLGTIG 185

BLAST of MELO3C021340.jh1 vs. NCBI nr
Match: XP_023548312.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 1.99e-13
Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 0

Query: 6   STKKKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DA 65
           +T KKK G S++LG+GAGLL   VGGLLLG+  ADAGAA  SF+LFS   GGG     DA
Sbjct: 110 TTGKKKKGKSKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFELFSDATGGGFDQLCDA 169

Query: 66  SMQPMSDSIDLLDTI 75
            MQ +SDSIDLL TI
Sbjct: 170 RMQSVSDSIDLLGTI 184

BLAST of MELO3C021340.jh1 vs. ExPASy TrEMBL
Match: A0A6J1KZM6 (polyadenylation factor subunit 2-like OS=Cucurbita maxima OX=3661 GN=LOC111499038 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.26e-14
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 6   STKKKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DA 65
           +T KKK G S++LG+GAGLL   VGGLLLG+  ADAGAA  SF+LFS   GGG     DA
Sbjct: 110 TTGKKKKGKSKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFELFSDATGGGFDQLCDA 169

Query: 66  SMQPMSDSIDLLDTIG 76
            MQ +SDSIDLL TIG
Sbjct: 170 RMQSVSDSIDLLGTIG 185

BLAST of MELO3C021340.jh1 vs. ExPASy TrEMBL
Match: A0A6J1H610 (protein SRC2-like OS=Cucurbita moschata OX=3662 GN=LOC111460345 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.26e-14
Identity = 48/76 (63.16%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 6   STKKKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DA 65
           +T KKK GMS++LG+GAGLL   VGGLLLG+  ADAGAA  SF+ FS   GGG     DA
Sbjct: 110 TTGKKKKGMSKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFEFFSDATGGGFDQLCDA 169

Query: 66  SMQPMSDSIDLLDTIG 76
            MQ  SDSIDLL TIG
Sbjct: 170 RMQSASDSIDLLGTIG 185

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875072.13.20e-2578.38formin-like protein 20 [Benincasa hispida][more]
XP_022959345.12.59e-1463.16protein SRC2-like [Cucurbita moschata][more]
XP_023006250.12.59e-1463.16polyadenylation factor subunit 2-like [Cucurbita maxima][more]
KAG6575060.15.15e-1463.16hypothetical protein SDJN03_25699, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023548312.11.99e-1362.67formin-like protein 20 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KZM61.26e-1463.16polyadenylation factor subunit 2-like OS=Cucurbita maxima OX=3661 GN=LOC11149903... [more]
A0A6J1H6101.26e-1463.16protein SRC2-like OS=Cucurbita moschata OX=3662 GN=LOC111460345 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021340.jh1.t1MELO3C021340.jh1.t1mRNA