MELO3C021105 (gene) Melon (DHL92) v4

Overview
NameMELO3C021105
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr01: 26504453 .. 26504830 (+)
RNA-Seq ExpressionMELO3C021105
SyntenyMELO3C021105
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGCACGTTCAGAGACCTTTGTTAATGTCGGGTCTAATGTGCCAAACAATTTGGATGTTGTTTCCCTTGGTGATTTACATGATCTAGACATCCCGATGATGTATAGTTAAGGAGTGGATATGTCATTGGATGAGATGTTGGGAATACATGCAGGTAGATCAAGTGAAGGAAGAAATGGTTCCAGTGGAAGTAAGAGGAAACGAGGTAGAGAACATTATAAAATGGTAGACGTCATTAGGAATGCAATGCAATTTGAAAATGACCAGTTAAAGGCAATTGTAGATTGGCACAAAGATCAAAAGCATGCAATGGAGGTCGAATTGCATGTGAAAGTTGTGAAACAGTTGCAAGATATCCCTGAACTACATAGCTGA

mRNA sequence

ATGAGAGCACGTTCAGAGACCTTTGTTAATGTCGGGTCTAATGTGCCAAACAATTTGGATGTTGTTTCCCTTGGTAGATCAAGTGAAGGAAGAAATGGTTCCAGTGGAAGTAAGAGGAAACGAGGTAGAGAACATTATAAAATGGTAGACGTCATTAGGAATGCAATGCAATTTGAAAATGACCAGTTAAAGGCAATTGTAGATTGGCACAAAGATCAAAAGCATGCAATGGAGGTCGAATTGCATGTGAAAGTTGTGAAACAGTTGCAAGATATCCCTGAACTACATAGCTGA

Coding sequence (CDS)

ATGAGAGCACGTTCAGAGACCTTTGTTAATGTCGGGTCTAATGTGCCAAACAATTTGGATGTTGTTTCCCTTGGTAGATCAAGTGAAGGAAGAAATGGTTCCAGTGGAAGTAAGAGGAAACGAGGTAGAGAACATTATAAAATGGTAGACGTCATTAGGAATGCAATGCAATTTGAAAATGACCAGTTAAAGGCAATTGTAGATTGGCACAAAGATCAAAAGCATGCAATGGAGGTCGAATTGCATGTGAAAGTTGTGAAACAGTTGCAAGATATCCCTGAACTACATAGCTGA

Protein sequence

MRARSETFVNVGSNVPNNLDVVSLGRSSEGRNGSSGSKRKRGREHYKMVDVIRNAMQFENDQLKAIVDWHKDQKHAMEVELHVKVVKQLQDIPELHS
Homology
BLAST of MELO3C021105 vs. NCBI nr
Match: KAA0026097.1 (subtilisin-like protease SBT3.17 isoform X1 [Cucumis melo var. makuwa] >TYJ96314.1 subtilisin-like protease SBT3.17 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 0

Query: 1  MRARSETFVNVGSNVPNNLDVVSLGRSSEGRNGSSGSKRKRGREHYKMVDVIRNAMQFEN 60
          MRARSETFVNVGSNVPNNLDVV LGRSSEGRNGSSGSKRKRGRE+YKMVDVIRNA+ F N
Sbjct: 1  MRARSETFVNVGSNVPNNLDVVPLGRSSEGRNGSSGSKRKRGREYYKMVDVIRNAI-FAN 60

Query: 61 DQLKAIVDWHKDQKHAMEVELHVKVVK 88
          DQLKAIVD HKDQKHAMEVELH KVVK
Sbjct: 61 DQLKAIVDRHKDQKHAMEVELHEKVVK 86

BLAST of MELO3C021105 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 0

Query: 2   RARSETFVNVGSNVPN--NLDV---------------------------VSLGRSSEGRN 61
           RARSETF +VGSNVPN  N DV                           +  G++SE +N
Sbjct: 336 RARSETFADVGSNVPNMFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQASERKN 395

Query: 62  GSSGSKRKRGREHYKMVDVIRNAMQFENDQLKAIVDWHKDQKHAMEVELHVKVVKQLQDI 98
            SSGSKRK+G +HY+ V+VI++A++F NDQLKAI +W K +K A EVEL  +V+KQLQDI
Sbjct: 396 CSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAIANWPK-EKRATEVELRAEVMKQLQDI 455

BLAST of MELO3C021105 vs. NCBI nr
Match: ADN33753.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0052316.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01879.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-17
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0

Query: 17  NNLDVVSLGRSSEGRNGSSGSKRKRGREHYKMVDVIRNAMQFENDQLKAIVDWHKDQKHA 76
           N +  +   ++SE RN SSGSKRK+G EHY+MV+VI++AM+F NDQLKA  DW KD KH+
Sbjct: 29  NEMFGIRADQASERRNCSSGSKRKQGSEHYEMVEVIKSAMEFGNDQLKAFEDWSKD-KHS 88

Query: 77  MEVELHVKVVKQLQDIPELHS 98
            EVELH +VVKQLQDIPEL S
Sbjct: 89  TEVELHAEVVKQLQDIPELRS 108

BLAST of MELO3C021105 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 3.5e-16
Identity = 61/124 (49.19%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 3   ARSETFVNVGSNVPNNLD---------------------VVSL--------GRSSEGRNG 62
           ARSETF +VGSN+PN  +                     ++SL        G++SE RN 
Sbjct: 43  ARSETFADVGSNIPNMFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNC 102

Query: 63  SSGSKRKRGREHYKMVDVIRNAMQFENDQLKAIVDWHKDQKHAMEVELHVKVVKQLQDIP 98
           SS SKRK+G +HY+ V+VIR+AM+F NDQLKAI DW K +K AM+VEL   VVKQLQDIP
Sbjct: 103 SSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLK-EKRAMKVELRALVVKQLQDIP 162

BLAST of MELO3C021105 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 5.9e-16
Identity = 60/124 (48.39%), Postives = 74/124 (59.68%), Query Frame = 0

Query: 3   ARSETFVNVGSNV-----------------------------PNNLDVVSLGRSSEGRNG 62
           ARSETF NVGSNV                             P+ +  +  G++SE RN 
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 203

Query: 63  SSGSKRKRGREHYKMVDVIRNAMQFENDQLKAIVDWHKDQKHAMEVELHVKVVKQLQDIP 98
           SS SKRKRG E Y+ V+VIR+ M+F N+QLKAI DW K +K AMEVE+  +VVKQLQDIP
Sbjct: 204 SSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPK-EKRAMEVEMRAQVVKQLQDIP 263

BLAST of MELO3C021105 vs. ExPASy TrEMBL
Match: A0A5D3BBJ3 (Subtilisin-like protease SBT3.17 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00180 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.8e-33
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 0

Query: 1  MRARSETFVNVGSNVPNNLDVVSLGRSSEGRNGSSGSKRKRGREHYKMVDVIRNAMQFEN 60
          MRARSETFVNVGSNVPNNLDVV LGRSSEGRNGSSGSKRKRGRE+YKMVDVIRNA+ F N
Sbjct: 1  MRARSETFVNVGSNVPNNLDVVPLGRSSEGRNGSSGSKRKRGREYYKMVDVIRNAI-FAN 60

Query: 61 DQLKAIVDWHKDQKHAMEVELHVKVVK 88
          DQLKAIVD HKDQKHAMEVELH KVVK
Sbjct: 61 DQLKAIVDRHKDQKHAMEVELHEKVVK 86

BLAST of MELO3C021105 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-17
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 0

Query: 2   RARSETFVNVGSNVPN--NLDV---------------------------VSLGRSSEGRN 61
           RARSETF +VGSNVPN  N DV                           +  G++SE +N
Sbjct: 336 RARSETFADVGSNVPNMFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQASERKN 395

Query: 62  GSSGSKRKRGREHYKMVDVIRNAMQFENDQLKAIVDWHKDQKHAMEVELHVKVVKQLQDI 98
            SSGSKRK+G +HY+ V+VI++A++F NDQLKAI +W K +K A EVEL  +V+KQLQDI
Sbjct: 396 CSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAIANWPK-EKRATEVELRAEVMKQLQDI 455

BLAST of MELO3C021105 vs. ExPASy TrEMBL
Match: A0A5A7UDQ3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001410 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-17
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0

Query: 17  NNLDVVSLGRSSEGRNGSSGSKRKRGREHYKMVDVIRNAMQFENDQLKAIVDWHKDQKHA 76
           N +  +   ++SE RN SSGSKRK+G EHY+MV+VI++AM+F NDQLKA  DW KD KH+
Sbjct: 29  NEMFGIRADQASERRNCSSGSKRKQGSEHYEMVEVIKSAMEFGNDQLKAFEDWSKD-KHS 88

Query: 77  MEVELHVKVVKQLQDIPELHS 98
            EVELH +VVKQLQDIPEL S
Sbjct: 89  TEVELHAEVVKQLQDIPELRS 108

BLAST of MELO3C021105 vs. ExPASy TrEMBL
Match: E5GBB1 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-17
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0

Query: 17  NNLDVVSLGRSSEGRNGSSGSKRKRGREHYKMVDVIRNAMQFENDQLKAIVDWHKDQKHA 76
           N +  +   ++SE RN SSGSKRK+G EHY+MV+VI++AM+F NDQLKA  DW KD KH+
Sbjct: 29  NEMFGIRADQASERRNCSSGSKRKQGSEHYEMVEVIKSAMEFGNDQLKAFEDWSKD-KHS 88

Query: 77  MEVELHVKVVKQLQDIPELHS 98
            EVELH +VVKQLQDIPEL S
Sbjct: 89  TEVELHAEVVKQLQDIPELRS 108

BLAST of MELO3C021105 vs. ExPASy TrEMBL
Match: A0A5D3CVB7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00360 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 61/124 (49.19%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 3   ARSETFVNVGSNVPNNLD---------------------VVSL--------GRSSEGRNG 62
           ARSETF +VGSN+PN  +                     ++SL        G++SE RN 
Sbjct: 43  ARSETFADVGSNIPNMFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNC 102

Query: 63  SSGSKRKRGREHYKMVDVIRNAMQFENDQLKAIVDWHKDQKHAMEVELHVKVVKQLQDIP 98
           SS SKRK+G +HY+ V+VIR+AM+F NDQLKAI DW K +K AM+VEL   VVKQLQDIP
Sbjct: 103 SSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLK-EKRAMKVELRALVVKQLQDIP 162

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0026097.11.2e-3291.95subtilisin-like protease SBT3.17 isoform X1 [Cucumis melo var. makuwa] >TYJ96314... [more]
KAA0033290.13.1e-1749.60putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... [more]
ADN33753.14.1e-1764.20hypothetical protein [Cucumis melo subsp. melo] >KAA0052316.1 retrotransposon pr... [more]
KAA0042340.13.5e-1649.19retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p... [more]
XP_008441954.15.9e-1648.39PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BBJ35.8e-3391.95Subtilisin-like protease SBT3.17 isoform X1 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7SQU21.5e-1749.60Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7UDQ32.0e-1764.20Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GBB12.0e-1764.20Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3CVB71.7e-1649.19Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021105.1MELO3C021105.1mRNA