MELO3C020401.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C020401.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon gag protein
Locationchr05: 10146349 .. 10146720 (-)
RNA-Seq ExpressionMELO3C020401.jh1
SyntenyMELO3C020401.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCGGAGATCAAGATCACTAAGCTAGTTCTTTGCCTTGCTCGTAGCAAAGCCCCACCCAATCAGGCTACCATGCTGAACAAGCCTGGTATGAAGCGGACTGCAAGCAAAATTGGCAATCGGCCACGTGACTTCACGTACAATGTCTCAAAGGCCGATGAGATCTATGATTGCTTGGAAAAAGTTGGGTTAGTAGGGTCCCCAGAGCATCAAGTCCAGTTAGACACACTAAAGGGACAGAACCCCATAGGCAAGTTTCATGCCAGTAATAATCACGCCATAGCTGACTCCGTAGCCTTTTGCCACGCAATACAGGACAAGAGGAGGCTTGCTGAAGTTTCTGGAAAAGGGAAAAGAGATCTTGGTTGA

mRNA sequence

ATGGTGGCGGAGATCAAGATCACTAAGCTAGTTCTTTGCCTTGCTCGTAGCAAAGCCCCACCCAATCAGGCTACCATGCTGAACAAGCCTGGTATGAAGCGGACTGCAAGCAAAATTGGCAATCGGCCACGTGACTTCACGTACAATGTCTCAAAGGCCGATGAGATCTATGATTGCTTGGAAAAAGTTGGGTTAGTAGGGTCCCCAGAGCATCAAGTCCAGTTAGACACACTAAAGGGACAGAACCCCATAGGCAAGTTTCATGCCAGTAATAATCACGCCATAGCTGACTCCGTAGCCTTTTGCCACGCAATACAGGACAAGAGGAGGCTTGCTGAAGTTTCTGGAAAAGGGAAAAGAGATCTTGGTTGA

Coding sequence (CDS)

ATGGTGGCGGAGATCAAGATCACTAAGCTAGTTCTTTGCCTTGCTCGTAGCAAAGCCCCACCCAATCAGGCTACCATGCTGAACAAGCCTGGTATGAAGCGGACTGCAAGCAAAATTGGCAATCGGCCACGTGACTTCACGTACAATGTCTCAAAGGCCGATGAGATCTATGATTGCTTGGAAAAAGTTGGGTTAGTAGGGTCCCCAGAGCATCAAGTCCAGTTAGACACACTAAAGGGACAGAACCCCATAGGCAAGTTTCATGCCAGTAATAATCACGCCATAGCTGACTCCGTAGCCTTTTGCCACGCAATACAGGACAAGAGGAGGCTTGCTGAAGTTTCTGGAAAAGGGAAAAGAGATCTTGGTTGA

Protein sequence

MVAEIKITKLVLCLARSKAPPNQATMLNKPGMKRTASKIGNRPRDFTYNVSKADEIYDCLEKVGLVGSPEHQVQLDTLKGQNPIGKFHASNNHAIADSVAFCHAIQDKRRLAEVSGKGKRDLG
Homology
BLAST of MELO3C020401.jh1 vs. NCBI nr
Match: KAA0060198.1 (hypothetical protein E6C27_scaffold386G00100 [Cucumis melo var. makuwa] >TYJ95570.1 hypothetical protein E5676_scaffold767G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (597), Expect = 2.07e-77
Identity = 116/123 (94.31%), Postives = 117/123 (95.12%), Query Frame = 0

Query: 1   MVAEIKITKLVLCLARSKAPPNQATMLNKPGMKRTASKIGNRPRDFTYNVSKADEIYDCL 60
           MVAEIKIT  VLCLARSKAPPNQATMLNKPGMKRTASK GNRPRDFTYNVSKADEIYDCL
Sbjct: 1   MVAEIKITTPVLCLARSKAPPNQATMLNKPGMKRTASKFGNRPRDFTYNVSKADEIYDCL 60

Query: 61  EKVGLVGSPEHQVQLDTLKGQNPIGKFHASNNHAIADSVAFCHAIQDKRRLAEVSGKGKR 120
           EKVGLVGSPEHQVQLDTLKGQNPIGKFHASN+HA  DSVAFCHAIQDKRRLAEVS KGKR
Sbjct: 61  EKVGLVGSPEHQVQLDTLKGQNPIGKFHASNSHATTDSVAFCHAIQDKRRLAEVSRKGKR 120

Query: 121 DLG 123
           DLG
Sbjct: 121 DLG 123

BLAST of MELO3C020401.jh1 vs. NCBI nr
Match: KAA0049660.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 220 bits (561), Expect = 6.40e-72
Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 0

Query: 1   MVAEIKITKLVLCLARSKAPPNQATMLNKPGMKRTASKIGNRPRDFTYNVSKADEIYDCL 60
           MVAEIKITK VLCLARSKAPPNQA MLNKPGMKRT  K GNRPRDFTY+VSKADEIYDCL
Sbjct: 1   MVAEIKITKPVLCLARSKAPPNQAAMLNKPGMKRTVGKFGNRPRDFTYDVSKADEIYDCL 60

Query: 61  EKVGLVGSPEHQVQLDTLKGQNPIGKFHASNNHAIADSVAFCHAIQDKRRLAEVSGKGKR 120
           EKVGLVGSPEHQVQLDTLKGQNP+ KFHASN+HA ADSVAF HAIQDKRRLAEVS KGKR
Sbjct: 61  EKVGLVGSPEHQVQLDTLKGQNPVCKFHASNSHATADSVAFRHAIQDKRRLAEVSRKGKR 120

Query: 121 DL 122
           DL
Sbjct: 121 DL 122

BLAST of MELO3C020401.jh1 vs. NCBI nr
Match: ERM96753.1 (hypothetical protein AMTR_s03839p00001660 [Amborella trichopoda])

HSP 1 Score: 200 bits (509), Expect = 4.93e-64
Identity = 102/122 (83.61%), Postives = 106/122 (86.89%), Query Frame = 0

Query: 1   MVAEIKITKLVLCLARSKAPPNQATMLNKPGMKRTASKIGNRPRDFTYNVSKADEIYDCL 60
           MVA IKITK VLCLA  KAPPNQA MLNKPGMK TA K GNRPRDFTY+VSKADEIYDCL
Sbjct: 1   MVAGIKITKPVLCLALRKAPPNQAAMLNKPGMKLTAGKFGNRPRDFTYDVSKADEIYDCL 60

Query: 61  EKVGLVGSPEHQVQLDTLKGQNPIGKFHASNNHAIADSVAFCHAIQDKRRLAEVSGKGKR 120
           EKVG   SPEHQVQLDTLKGQNP+ KFHASN+HA AD VAFCHAIQDKRRLAEVS KGK 
Sbjct: 61  EKVG---SPEHQVQLDTLKGQNPVCKFHASNSHATADCVAFCHAIQDKRRLAEVSRKGKT 119

Query: 121 DL 122
           D+
Sbjct: 121 DV 119

BLAST of MELO3C020401.jh1 vs. NCBI nr
Match: QWQ49866.1 (hypothetical protein [Zelkova schneideriana])

HSP 1 Score: 175 bits (444), Expect = 1.21e-53
Identity = 93/124 (75.00%), Postives = 100/124 (80.65%), Query Frame = 0

Query: 1   MVAEIKITKLVLCLARSKAPPNQATMLNKPGMKRTASKIGNRPRDFTYNVSKADEIYDCL 60
           MVA+IKITK VLCLA  KAPPNQA MLN PGMK TA K GNRPRDFTY+VSKADEIYDCL
Sbjct: 1   MVAKIKITKPVLCLALRKAPPNQAAMLNTPGMKLTAGKFGNRPRDFTYDVSKADEIYDCL 60

Query: 61  EKVGLVGSPEHQVQLDTLKGQNPIGKFHASNNHAIADSVAFCHAIQDK--RRLAEVSGKG 120
           EK   VGSPEHQVQLDTLKGQNP+ KFH+SN+HA AD VAFC AIQDK    L +   KG
Sbjct: 61  EKK--VGSPEHQVQLDTLKGQNPVCKFHSSNSHATADCVAFCQAIQDKIDGGLLKFPEKG 120

Query: 121 KRDL 122
           K+ L
Sbjct: 121 KQML 122

BLAST of MELO3C020401.jh1 vs. NCBI nr
Match: PON41221.1 (hypothetical protein PanWU01x14_291200 [Parasponia andersonii])

HSP 1 Score: 68.2 bits (165), Expect = 2.42e-12
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 1  MVAEIKITKLVLCLARSKAPPNQATMLNKPGMKRTASKIGNRPRD 45
          MVA+IKITK VLCLA  KAPPNQ  MLNKPGMK TA +  NRPRD
Sbjct: 23 MVADIKITKPVLCLALRKAPPNQVAMLNKPGMKLTAGQFCNRPRD 67

BLAST of MELO3C020401.jh1 vs. ExPASy TrEMBL
Match: A0A5D3B6F5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00750 PE=4 SV=1)

HSP 1 Score: 234 bits (597), Expect = 1.00e-77
Identity = 116/123 (94.31%), Postives = 117/123 (95.12%), Query Frame = 0

Query: 1   MVAEIKITKLVLCLARSKAPPNQATMLNKPGMKRTASKIGNRPRDFTYNVSKADEIYDCL 60
           MVAEIKIT  VLCLARSKAPPNQATMLNKPGMKRTASK GNRPRDFTYNVSKADEIYDCL
Sbjct: 1   MVAEIKITTPVLCLARSKAPPNQATMLNKPGMKRTASKFGNRPRDFTYNVSKADEIYDCL 60

Query: 61  EKVGLVGSPEHQVQLDTLKGQNPIGKFHASNNHAIADSVAFCHAIQDKRRLAEVSGKGKR 120
           EKVGLVGSPEHQVQLDTLKGQNPIGKFHASN+HA  DSVAFCHAIQDKRRLAEVS KGKR
Sbjct: 61  EKVGLVGSPEHQVQLDTLKGQNPIGKFHASNSHATTDSVAFCHAIQDKRRLAEVSRKGKR 120

Query: 121 DLG 123
           DLG
Sbjct: 121 DLG 123

BLAST of MELO3C020401.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U2V1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G001330 PE=4 SV=1)

HSP 1 Score: 220 bits (561), Expect = 3.10e-72
Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 0

Query: 1   MVAEIKITKLVLCLARSKAPPNQATMLNKPGMKRTASKIGNRPRDFTYNVSKADEIYDCL 60
           MVAEIKITK VLCLARSKAPPNQA MLNKPGMKRT  K GNRPRDFTY+VSKADEIYDCL
Sbjct: 1   MVAEIKITKPVLCLARSKAPPNQAAMLNKPGMKRTVGKFGNRPRDFTYDVSKADEIYDCL 60

Query: 61  EKVGLVGSPEHQVQLDTLKGQNPIGKFHASNNHAIADSVAFCHAIQDKRRLAEVSGKGKR 120
           EKVGLVGSPEHQVQLDTLKGQNP+ KFHASN+HA ADSVAF HAIQDKRRLAEVS KGKR
Sbjct: 61  EKVGLVGSPEHQVQLDTLKGQNPVCKFHASNSHATADSVAFRHAIQDKRRLAEVSRKGKR 120

Query: 121 DL 122
           DL
Sbjct: 121 DL 122

BLAST of MELO3C020401.jh1 vs. ExPASy TrEMBL
Match: U5CUR7 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03839p00001660 PE=4 SV=1)

HSP 1 Score: 200 bits (509), Expect = 2.39e-64
Identity = 102/122 (83.61%), Postives = 106/122 (86.89%), Query Frame = 0

Query: 1   MVAEIKITKLVLCLARSKAPPNQATMLNKPGMKRTASKIGNRPRDFTYNVSKADEIYDCL 60
           MVA IKITK VLCLA  KAPPNQA MLNKPGMK TA K GNRPRDFTY+VSKADEIYDCL
Sbjct: 1   MVAGIKITKPVLCLALRKAPPNQAAMLNKPGMKLTAGKFGNRPRDFTYDVSKADEIYDCL 60

Query: 61  EKVGLVGSPEHQVQLDTLKGQNPIGKFHASNNHAIADSVAFCHAIQDKRRLAEVSGKGKR 120
           EKVG   SPEHQVQLDTLKGQNP+ KFHASN+HA AD VAFCHAIQDKRRLAEVS KGK 
Sbjct: 61  EKVG---SPEHQVQLDTLKGQNPVCKFHASNSHATADCVAFCHAIQDKRRLAEVSRKGKT 119

Query: 121 DL 122
           D+
Sbjct: 121 DV 119

BLAST of MELO3C020401.jh1 vs. ExPASy TrEMBL
Match: A0A2P5AXI0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_291200 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.17e-12
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 1  MVAEIKITKLVLCLARSKAPPNQATMLNKPGMKRTASKIGNRPRD 45
          MVA+IKITK VLCLA  KAPPNQ  MLNKPGMK TA +  NRPRD
Sbjct: 23 MVADIKITKPVLCLALRKAPPNQVAMLNKPGMKLTAGQFCNRPRD 67

BLAST of MELO3C020401.jh1 vs. ExPASy TrEMBL
Match: A0A1Y0B3A3 (Uncharacterized protein OS=Utricularia reniformis OX=192314 GN=AEK19_MT1701 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.82e-10
Identity = 43/78 (55.13%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 1   MVAEIKITKLVLCLARSKAPPNQATMLNKPGMKRTASKIGNRPRDFTYNVSKADEIYDCL 60
           MVAEIKITK VLCLA  KAPPNQA ML+    +  A  IG+     T +        DCL
Sbjct: 55  MVAEIKITKPVLCLALRKAPPNQAAMLSLVLQENLA--IGH-VTSRTMSQRSYVNCVDCL 114

Query: 61  EKVGLVGSPEHQVQLDTL 78
           +K+G   SPEHQVQLDTL
Sbjct: 115 DKIG---SPEHQVQLDTL 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0060198.12.07e-7794.31hypothetical protein E6C27_scaffold386G00100 [Cucumis melo var. makuwa] >TYJ9557... [more]
KAA0049660.16.40e-7290.16Retrotransposon gag protein [Cucumis melo var. makuwa][more]
ERM96753.14.93e-6483.61hypothetical protein AMTR_s03839p00001660 [Amborella trichopoda][more]
QWQ49866.11.21e-5375.00hypothetical protein [Zelkova schneideriana][more]
PON41221.12.42e-1275.56hypothetical protein PanWU01x14_291200 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3B6F51.00e-7794.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2V13.10e-7290.16Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
U5CUR72.39e-6483.61Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03839p00001660... [more]
A0A2P5AXI01.17e-1275.56Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_291200 PE... [more]
A0A1Y0B3A33.82e-1055.13Uncharacterized protein OS=Utricularia reniformis OX=192314 GN=AEK19_MT1701 PE=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020401.jh1.t1MELO3C020401.jh1.t1mRNA