Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAGTTCCAATGGTGACTGACAACACCAAATTGTACACCAAATTGTACACGGTATTCAACAAGCTGTTCCACGTGACTGTAATACTGAACCACTGTTGCACAACATTGACCTGAGGACTGCTGATTGGTCAGATAGAGTTGCTCATTTAGTGATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACACCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACTGGGAGCTGCTATGAGTCATCTGGTATACATTTAAAAATTGTATATTTGTTTTTAGTGTTAATTTATTTTCAATGATTTCTAATTCATTTTAATATTTTACAGAGATCAAACAATATTAGACTTCGGAATGTTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCAATGACAGAGACACAAAGCGAACATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGAAACGACATATTATGATTCAGGAGTCGGTCAATCGTTAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTAG
mRNA sequence
TATAGTTCCAATGGTGACTGACAACACCAAATTGTACACCAAATTGTACACGGTATTCAACAAGCTGTTCCACGTGACTGTAATACTGAACCACTGTTGCACAACATTGACCTGAGGACTGCTGATTGGTCAGATAGAGTTGCTCATTTAGTGATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACACCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACTGGGAGCTGCTATGAGTCATCTGAGATCAAACAATATTAGACTTCGGAATGTTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCAATGACAGAGACACAAAGCGAACATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGAAACGACATATTATGATTCAGGAGTCGGTCAATCGTTAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTAG
Coding sequence (CDS)
ATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACACCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACTGGGAGCTGCTATGAGTCATCTGAGATCAAACAATATTAGACTTCGGAATGTTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCAATGACAGAGACACAAAGCGAACATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGAAACGACATATTATGATTCAGGAGTCGGTCAATCGTTAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTAG
Protein sequence
MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD
Homology
BLAST of MELO3C020246 vs. NCBI nr
Match:
TYK01570.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 362.5 bits (929), Expect = 2.1e-96
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query: 1 MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA
Sbjct: 133 MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 192
Query: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 120
DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT
Sbjct: 193 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 252
Query: 121 ETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD 176
ETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD
Sbjct: 253 ETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD 307
BLAST of MELO3C020246 vs. NCBI nr
Match:
KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 348.2 bits (892), Expect = 4.1e-92
Identity = 168/175 (96.00%), Postives = 171/175 (97.71%), Query Frame = 0
Query: 1 MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
MRWHNRRRFTATGPPIEQFDMDVTQEY HWYKNISKLYITQ GAAMSHLRSNNIRLRNVA
Sbjct: 253 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 312
Query: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 120
DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHG+EVPPMT
Sbjct: 313 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 372
Query: 121 ETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD 176
+TQSEHNYVSPVMMMPTF TTYYDSGVGQS DFGRGYYNS+AGQSSTDFGQQYYD
Sbjct: 373 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYD 427
BLAST of MELO3C020246 vs. NCBI nr
Match:
TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 348.2 bits (892), Expect = 4.1e-92
Identity = 168/175 (96.00%), Postives = 171/175 (97.71%), Query Frame = 0
Query: 1 MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
MRWHNRRRFTATGPPIEQFDMDVTQEY HWYKNISKLYITQ GAAMSHLRSNNIRLRNVA
Sbjct: 1014 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 1073
Query: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 120
DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHG+EVPPMT
Sbjct: 1074 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 1133
Query: 121 ETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD 176
+TQSEHNYVSPVMMMPTF TTYYDSGVGQS DFGRGYYNS+AGQSSTDFGQQYYD
Sbjct: 1134 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYD 1188
BLAST of MELO3C020246 vs. NCBI nr
Match:
KAA0067080.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 344.0 bits (881), Expect = 7.8e-91
Identity = 167/175 (95.43%), Postives = 169/175 (96.57%), Query Frame = 0
Query: 1 MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
MRWHNRRRFTATGPPIEQFDMDVTQEY +WYKNISKLYITQ GA MSHLRSNNIRLRNVA
Sbjct: 366 MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAVMSHLRSNNIRLRNVA 425
Query: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 120
DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT
Sbjct: 426 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 485
Query: 121 ETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD 176
+TQSEHNYVSPVMMMPTF TTYYDS VGQS DFGRGYYNSEAGQSSTDFGQQYYD
Sbjct: 486 QTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYD 540
BLAST of MELO3C020246 vs. NCBI nr
Match:
XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])
HSP 1 Score: 338.6 bits (867), Expect = 3.3e-89
Identity = 166/177 (93.79%), Postives = 168/177 (94.92%), Query Frame = 0
Query: 1 MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
MRWHNRRRFTATGPPIEQFDMDVTQEY HWYKNISKLYITQ GAAMSHLRSNN RLRN+A
Sbjct: 1 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 60
Query: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPM- 120
DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPM
Sbjct: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMT 120
Query: 121 -TETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD 176
T+TQSEHNYVSPVMMMPTF TYYDSGVGQS DFGRGYYNSEAGQSSTDFGQQYYD
Sbjct: 121 QTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYD 177
BLAST of MELO3C020246 vs. ExPASy TrEMBL
Match:
A0A5D3BR52 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001490 PE=4 SV=1)
HSP 1 Score: 362.5 bits (929), Expect = 1.0e-96
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query: 1 MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA
Sbjct: 133 MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 192
Query: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 120
DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT
Sbjct: 193 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 252
Query: 121 ETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD 176
ETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD
Sbjct: 253 ETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD 307
BLAST of MELO3C020246 vs. ExPASy TrEMBL
Match:
A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)
HSP 1 Score: 348.2 bits (892), Expect = 2.0e-92
Identity = 168/175 (96.00%), Postives = 171/175 (97.71%), Query Frame = 0
Query: 1 MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
MRWHNRRRFTATGPPIEQFDMDVTQEY HWYKNISKLYITQ GAAMSHLRSNNIRLRNVA
Sbjct: 1014 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 1073
Query: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 120
DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHG+EVPPMT
Sbjct: 1074 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 1133
Query: 121 ETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD 176
+TQSEHNYVSPVMMMPTF TTYYDSGVGQS DFGRGYYNS+AGQSSTDFGQQYYD
Sbjct: 1134 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYD 1188
BLAST of MELO3C020246 vs. ExPASy TrEMBL
Match:
A0A5A7T598 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00500 PE=4 SV=1)
HSP 1 Score: 348.2 bits (892), Expect = 2.0e-92
Identity = 168/175 (96.00%), Postives = 171/175 (97.71%), Query Frame = 0
Query: 1 MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
MRWHNRRRFTATGPPIEQFDMDVTQEY HWYKNISKLYITQ GAAMSHLRSNNIRLRNVA
Sbjct: 253 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 312
Query: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 120
DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHG+EVPPMT
Sbjct: 313 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 372
Query: 121 ETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD 176
+TQSEHNYVSPVMMMPTF TTYYDSGVGQS DFGRGYYNS+AGQSSTDFGQQYYD
Sbjct: 373 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYD 427
BLAST of MELO3C020246 vs. ExPASy TrEMBL
Match:
A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)
HSP 1 Score: 344.0 bits (881), Expect = 3.8e-91
Identity = 167/175 (95.43%), Postives = 169/175 (96.57%), Query Frame = 0
Query: 1 MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
MRWHNRRRFTATGPPIEQFDMDVTQEY +WYKNISKLYITQ GA MSHLRSNNIRLRNVA
Sbjct: 366 MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAVMSHLRSNNIRLRNVA 425
Query: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 120
DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT
Sbjct: 426 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 485
Query: 121 ETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD 176
+TQSEHNYVSPVMMMPTF TTYYDS VGQS DFGRGYYNSEAGQSSTDFGQQYYD
Sbjct: 486 QTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYD 540
BLAST of MELO3C020246 vs. ExPASy TrEMBL
Match:
A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)
HSP 1 Score: 338.6 bits (867), Expect = 1.6e-89
Identity = 166/177 (93.79%), Postives = 168/177 (94.92%), Query Frame = 0
Query: 1 MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
MRWHNRRRFTATGPPIEQFDMDVTQEY HWYKNISKLYITQ GAAMSHLRSNN RLRN+A
Sbjct: 744 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 803
Query: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPM- 120
DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPM
Sbjct: 804 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMT 863
Query: 121 -TETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD 176
T+TQSEHNYVSPVMMMPTF TYYDSGVGQS DFGRGYYNSEAGQSSTDFGQQYYD
Sbjct: 864 QTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYD 920
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK01570.1 | 2.1e-96 | 100.00 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0036767.1 | 4.1e-92 | 96.00 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| TYJ95836.1 | 4.1e-92 | 96.00 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0067080.1 | 7.8e-91 | 95.43 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| XP_008449513.1 | 3.3e-89 | 93.79 | PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BR52 | 1.0e-96 | 100.00 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BAB0 | 2.0e-92 | 96.00 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7T598 | 2.0e-92 | 96.00 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7VIP6 | 3.8e-91 | 95.43 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3DUI1 | 1.6e-89 | 93.79 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
