MELO3C020213 (gene) Melon (DHL92) v4

Overview


Name	MELO3C020213
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	chr06: 15688539 .. 15688721 (-)
RNA-Seq Expression	MELO3C020213
Synteny	MELO3C020213

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCGAGCATCTGGAATAACTAATGAATTACAACTCTATTGTACCGCAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGGTTCCAAAATGTAGAATCCATGTTGAATCACCATTTAGCGGGTCTCCAGTAA

mRNA sequence

ATGTGGCGAGCATCTGGAATAACTAATGAATTACAACTCTATTGTACCGCAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGGTTCCAAAATGTAGAATCCATGTTGAATCACCATTTAGCGGGTCTCCAGTAA

Coding sequence (CDS)

ATGTGGCGAGCATCTGGAATAACTAATGAATTACAACTCTATTGTACCGCAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGGTTCCAAAATGTAGAATCCATGTTGAATCACCATTTAGCGGGTCTCCAGTAA

Protein sequence

MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGLQ

Homology

[Close]

BLAST of MELO3C020213 vs. NCBI nr
Match: YP_004841783.1 (photosystem I P700 apoprotein A1 [Cucumis melo subsp. melo] >YP_009860073.1 photosystem I P700 apoprotein A1 [Cucumis melo subsp. agrestis] >ASY96622.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucumis melo var. conomon] >ASY96710.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucumis melo var. makuwa] >ASY96797.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucumis melo var. momordica] >ASY96884.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucumis melo var. dudaim] >ASY96971.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucumis melo var. cantalupo] >ASY97145.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucumis melo var. inodorus] >ASY97319.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucumis melo var. flexuosus] >QJF46383.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 3.9e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. NCBI nr
Match: AEN56132.1 (hypothetical protein [Cucumis melo subsp. melo] >AZP40306.1 hypothetical protein [Cucumis melo var. momordica])

HSP 1 Score: 127.5 bits (319), Expect = 3.9e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. NCBI nr
Match: QUB01752.1 (photosystem I P700 apoprotein A1 [Callisia repens])

HSP 1 Score: 126.3 bits (316), Expect = 8.7e-26
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL
Sbjct: 144 LWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. NCBI nr
Match: KAA0032901.1 (photosystem I P700 apoprotein A1 [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           MWRASGITNELQLYCTAIGALVFAAL+LFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALILFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. NCBI nr
Match: AFA27163.1 (photosystem I P700 apoprotein A1, partial [Tradescantia ohiensis] >QUB02760.1 photosystem I P700 apoprotein A1 [Tradescantia virginiana] >QWW34184.1 photosystem I P700 apoprotein A1 [Tradescantia ohiensis])

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. ExPASy Swiss-Prot
Match: Q2QD89 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psaA PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.9e-28
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLAGL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. ExPASy Swiss-Prot
Match: Q0ZJ20 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis vinifera OX=29760 GN=psaA PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.9e-28
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLAGL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. ExPASy Swiss-Prot
Match: Q7YJX2 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glaucus OX=212734 GN=psaA PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.3e-28
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLAGL
Sbjct: 144 LWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. ExPASy Swiss-Prot
Match: Q09X17 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Morus indica OX=248361 GN=psaA PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.7e-28
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLAGL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. ExPASy Swiss-Prot
Match: A0A335 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica OX=13443 GN=psaA PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 7.4e-28
Identity = 56/59 (94.92%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           +WRASGITNELQLYCTAIGAL+FAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLAGL
Sbjct: 144 IWRASGITNELQLYCTAIGALIFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. ExPASy TrEMBL
Match: A0A249RZM5 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo var. cantalupensis OX=3658 GN=psaA PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. ExPASy TrEMBL
Match: A0A1S4EU09 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo OX=3656 GN=psaA PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. ExPASy TrEMBL
Match: A0A249RXK9 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo subsp. agrestis OX=217619 GN=psaA PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. ExPASy TrEMBL
Match: A0A286NG17 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo var. flexuosus OX=1120798 GN=psaA PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. ExPASy TrEMBL
Match: A0A249RZ27 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo var. dudaim OX=2034236 GN=psaA PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 122.1 bits (305), Expect = 1.5e-28
Identity = 56/59 (94.92%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 60
           +WRASGIT+ELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLAGL
Sbjct: 144 IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-08
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 2   WRASGITNELQLYCTAIGALVFAALMLFAGWFHYH-KAAPKLAWFQNVESMLNHHLAGL 60
           W   G+     LY  A+  L  +AL L  GW H   K  P+++WF+N ES LNHHL+GL
Sbjct: 124 WYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPKWKPRVSWFKNAESRLNHHLSGL 182

The following BLAST results are available for this feature:

BLAST of MELO3C020213 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841783.1	3.9e-26	100.00	photosystem I P700 apoprotein A1 [Cucumis melo subsp. melo] >YP_009860073.1 phot...	[more]
AEN56132.1	3.9e-26	100.00	hypothetical protein [Cucumis melo subsp. melo] >AZP40306.1 hypothetical protein...	[more]
QUB01752.1	8.7e-26	98.31	photosystem I P700 apoprotein A1 [Callisia repens]	[more]
KAA0032901.1	1.1e-25	98.31	photosystem I P700 apoprotein A1 [Cucumis melo var. makuwa]	[more]
AFA27163.1	1.1e-25	98.31	photosystem I P700 apoprotein A1, partial [Tradescantia ohiensis] >QUB02760.1 ph...	[more]

BLAST of MELO3C020213 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD89	1.9e-28	98.31	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psa...	[more]
Q0ZJ20	1.9e-28	98.31	Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis vinifera OX=29760 GN=psa...	[more]
Q7YJX2	4.3e-28	96.61	Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glau...	[more]
Q09X17	5.7e-28	96.61	Photosystem I P700 chlorophyll a apoprotein A1 OS=Morus indica OX=248361 GN=psaA...	[more]
A0A335	7.4e-28	94.92	Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica OX=13443 GN=psa...	[more]

BLAST of MELO3C020213 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A249RZM5	1.9e-26	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo var. cantalupensi...	[more]
A0A1S4EU09	1.9e-26	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo OX=3656 GN=psaA P...	[more]
A0A249RXK9	1.9e-26	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo subsp. agrestis O...	[more]
A0A286NG17	1.9e-26	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo var. flexuosus OX...	[more]
A0A249RZ27	1.9e-26	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo var. dudaim OX=20...	[more]

BLAST of MELO3C020213 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00350.1	1.5e-28	94.92	Photosystem I, PsaA/PsaB protein	[more]
ATCG00340.1	2.3e-08	44.07	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	PRINTS	PR00257	PHOTSYSPSAAB	coord: 13..37 score: 63.41 coord: 52..60 score: 29.17
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 1..59 e-value: 1.2E-25 score: 89.9
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 1..60 e-value: 3.7E-25 score: 89.8
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 1..59
IPR006243	Photosystem I PsaA	PANTHER	PTHR30128:SF60	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 1..59
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020213.1	MELO3C020213.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0046872	metal ion binding