Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACACATCCTGTAGCAAAGGGCCTCCTTAACAAATCGTTTTCCTATTACGACGAACTTGCATATGTGTTTGGGAGGGATAGGGTGATGGGTCACTTTGTAGAGACGTTCATCGATGTCGGGTCCAATGACCCTAGCTGGTACGAAGGGTTTCAAACGACTGATGGAAACGATAAGGAGTTCCCCAGCATGTACAGTCAGGGGTTTGACATGTCCCAGGATGATGTACGTGCTTCACACCCTGCTTGCACATCGGAGTGTAGGACCGGATCGAATGGATCAAAGCAACGAAGGGAAGGGCAGTGGGTAGGTGAGATTGAGATGATACATGAGGCGCTGGAGTGTGAGAATGACCAGCTGAGGATGATTGCAGAGTGGCCTTCCCGCACGCTGCAGAATGAAACCACAATTTTCCAGGAAGTTCTACGCTAG
mRNA sequence
ATGCAAACACATCCTGTAGCAAAGGGCCTCCTTAACAAATCGTTTTCCTATTACGACGAACTTGCATATGTGTTTGGGAGGGATAGGGTGATGGGTCACTTTGTAGAGACGTTCATCGATGTCGGGTCCAATGACCCTAGCTGGTACGAAGGGTTTCAAACGACTGATGGAAACGATAAGGAGTTCCCCAGCATGTACAGTCAGGGGTTTGACATGTCCCAGGATGATGTACGTGCTTCACACCCTGCTTGCACATCGGAGTGTAGGACCGGATCGAATGGATCAAAGCAACGAAGGGAAGGGCAGTGGGTAGGTGAGATTGAGATGATACATGAGGCGCTGGAGTGTGAGAATGACCAGCTGAGGATGATTGCAGAGTGGCCTTCCCGCACGCTGCAGAATGAAACCACAATTTTCCAGGAAGTTCTACGCTAG
Coding sequence (CDS)
ATGCAAACACATCCTGTAGCAAAGGGCCTCCTTAACAAATCGTTTTCCTATTACGACGAACTTGCATATGTGTTTGGGAGGGATAGGGTGATGGGTCACTTTGTAGAGACGTTCATCGATGTCGGGTCCAATGACCCTAGCTGGTACGAAGGGTTTCAAACGACTGATGGAAACGATAAGGAGTTCCCCAGCATGTACAGTCAGGGGTTTGACATGTCCCAGGATGATGTACGTGCTTCACACCCTGCTTGCACATCGGAGTGTAGGACCGGATCGAATGGATCAAAGCAACGAAGGGAAGGGCAGTGGGTAGGTGAGATTGAGATGATACATGAGGCGCTGGAGTGTGAGAATGACCAGCTGAGGATGATTGCAGAGTGGCCTTCCCGCACGCTGCAGAATGAAACCACAATTTTCCAGGAAGTTCTACGCTAG
Protein sequence
MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDKEFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQLRMIAEWPSRTLQNETTIFQEVLR
Homology
BLAST of MELO3C020165 vs. NCBI nr
Match:
KAA0067019.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 302.8 bits (774), Expect = 1.6e-78
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query: 1 MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 60
MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK
Sbjct: 86 MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 145
Query: 61 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 120
EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ
Sbjct: 146 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 205
Query: 121 LRMIAEWPSRTLQNETTIFQEVLR 145
LRMIAEWPSRTLQNETTIFQEVLR
Sbjct: 206 LRMIAEWPSRTLQNETTIFQEVLR 229
BLAST of MELO3C020165 vs. NCBI nr
Match:
KAA0055946.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK28152.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 192.6 bits (488), Expect = 2.4e-45
Identity = 93/138 (67.39%), Postives = 106/138 (76.81%), Query Frame = 0
Query: 1 MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 60
MQ+HP AKGLLNK FSYYDELAYVF RDR G F ETF+D+ SN+ + YEGF +D ND
Sbjct: 69 MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDM 128
Query: 61 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 120
EFP MYSQ MSQDDVRAS P S+ RTGS+GSK++RE QW GEIEMIH ALEC NDQ
Sbjct: 129 EFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKRKRESQWEGEIEMIHMALECANDQ 188
Query: 121 LRMIAEWPSRTLQNETTI 139
LR I EW +R L N+TT+
Sbjct: 189 LRTIVEWSARALANDTTV 206
BLAST of MELO3C020165 vs. NCBI nr
Match:
KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 184.5 bits (467), Expect = 6.5e-43
Identity = 90/144 (62.50%), Postives = 109/144 (75.69%), Query Frame = 0
Query: 1 MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 60
+++HP AK LLNK FSYYDELAYVF DR G FVETF D+GSN+P+ YEGF +DGND
Sbjct: 178 IRSHPAAKSLLNKLFSYYDELAYVFEWDRATGRFVETFADIGSNEPAGYEGFDMSDGNDI 237
Query: 61 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 120
EFP MYSQG D+SQDDVR S PACTS+ R S+ SK++R Q GE+++I+ AL+C NDQ
Sbjct: 238 EFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQ 297
Query: 121 LRMIAEWPSRTLQNETTIFQEVLR 145
LR I EWP+R NET + QE LR
Sbjct: 298 LRTIIEWPTRPFANETFVRQEFLR 321
BLAST of MELO3C020165 vs. NCBI nr
Match:
KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 183.3 bits (464), Expect = 1.4e-42
Identity = 93/142 (65.49%), Postives = 110/142 (77.46%), Query Frame = 0
Query: 3 THPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDKEF 62
+HP AKGL NK F YYDELAYVFG DR+M FV+TF DVGSN P Y+ F DGN+ EF
Sbjct: 28 SHPAAKGLFNKPFPYYDELAYVFGCDRMMDGFVKTFDDVGSNKPVEYKRFDMLDGNE-EF 87
Query: 63 PSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQLR 122
PSMYSQG DMSQ+DVRAS P+ TS+ R S+GSK++RE Q GEIE+IH A+EC NDQLR
Sbjct: 88 PSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLR 147
Query: 123 MIAEWPSRTLQNETTIFQEVLR 145
IAEWP+R L N+T + QE+LR
Sbjct: 148 TIAEWPARALANDTHVRQELLR 168
BLAST of MELO3C020165 vs. NCBI nr
Match:
KAA0065782.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 174.5 bits (441), Expect = 6.7e-40
Identity = 84/139 (60.43%), Postives = 105/139 (75.54%), Query Frame = 0
Query: 3 THPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDKEF 62
+HPV KGLLNK F +YDEL YVFGRDR GHF ETF DVGSN+P YEGF DGN KEF
Sbjct: 52 SHPVRKGLLNKLFPFYDELVYVFGRDRARGHFAETFTDVGSNEPIRYEGFDIPDGN-KEF 111
Query: 63 PSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQLR 122
PS+Y+QG +MSQ+DVRAS P+ E R GS+GSK++R Q E+E+I+ A EC NDQL+
Sbjct: 112 PSVYNQGINMSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMARECTNDQLK 171
Query: 123 MIAEWPSRTLQNETTIFQE 142
++AEWP+R L N+ + Q+
Sbjct: 172 IVAEWPARALANDNHVRQK 189
BLAST of MELO3C020165 vs. ExPASy TrEMBL
Match:
A0A5D3DS68 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00180 PE=4 SV=1)
HSP 1 Score: 302.8 bits (774), Expect = 7.9e-79
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query: 1 MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 60
MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK
Sbjct: 86 MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 145
Query: 61 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 120
EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ
Sbjct: 146 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 205
Query: 121 LRMIAEWPSRTLQNETTIFQEVLR 145
LRMIAEWPSRTLQNETTIFQEVLR
Sbjct: 206 LRMIAEWPSRTLQNETTIFQEVLR 229
BLAST of MELO3C020165 vs. ExPASy TrEMBL
Match:
A0A5D3DXB2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00660 PE=4 SV=1)
HSP 1 Score: 192.6 bits (488), Expect = 1.2e-45
Identity = 93/138 (67.39%), Postives = 106/138 (76.81%), Query Frame = 0
Query: 1 MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 60
MQ+HP AKGLLNK FSYYDELAYVF RDR G F ETF+D+ SN+ + YEGF +D ND
Sbjct: 69 MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDM 128
Query: 61 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 120
EFP MYSQ MSQDDVRAS P S+ RTGS+GSK++RE QW GEIEMIH ALEC NDQ
Sbjct: 129 EFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKRKRESQWEGEIEMIHMALECANDQ 188
Query: 121 LRMIAEWPSRTLQNETTI 139
LR I EW +R L N+TT+
Sbjct: 189 LRTIVEWSARALANDTTV 206
BLAST of MELO3C020165 vs. ExPASy TrEMBL
Match:
A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)
HSP 1 Score: 184.5 bits (467), Expect = 3.1e-43
Identity = 90/144 (62.50%), Postives = 109/144 (75.69%), Query Frame = 0
Query: 1 MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 60
+++HP AK LLNK FSYYDELAYVF DR G FVETF D+GSN+P+ YEGF +DGND
Sbjct: 178 IRSHPAAKSLLNKLFSYYDELAYVFEWDRATGRFVETFADIGSNEPAGYEGFDMSDGNDI 237
Query: 61 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 120
EFP MYSQG D+SQDDVR S PACTS+ R S+ SK++R Q GE+++I+ AL+C NDQ
Sbjct: 238 EFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQ 297
Query: 121 LRMIAEWPSRTLQNETTIFQEVLR 145
LR I EWP+R NET + QE LR
Sbjct: 298 LRTIIEWPTRPFANETFVRQEFLR 321
BLAST of MELO3C020165 vs. ExPASy TrEMBL
Match:
A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)
HSP 1 Score: 183.3 bits (464), Expect = 7.0e-43
Identity = 93/142 (65.49%), Postives = 110/142 (77.46%), Query Frame = 0
Query: 3 THPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDKEF 62
+HP AKGL NK F YYDELAYVFG DR+M FV+TF DVGSN P Y+ F DGN+ EF
Sbjct: 28 SHPAAKGLFNKPFPYYDELAYVFGCDRMMDGFVKTFDDVGSNKPVEYKRFDMLDGNE-EF 87
Query: 63 PSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQLR 122
PSMYSQG DMSQ+DVRAS P+ TS+ R S+GSK++RE Q GEIE+IH A+EC NDQLR
Sbjct: 88 PSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLR 147
Query: 123 MIAEWPSRTLQNETTIFQEVLR 145
IAEWP+R L N+T + QE+LR
Sbjct: 148 TIAEWPARALANDTHVRQELLR 168
BLAST of MELO3C020165 vs. ExPASy TrEMBL
Match:
A0A5D3BD15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001730 PE=4 SV=1)
HSP 1 Score: 174.5 bits (441), Expect = 3.2e-40
Identity = 84/139 (60.43%), Postives = 105/139 (75.54%), Query Frame = 0
Query: 3 THPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDKEF 62
+HPV KGLLNK F +YDEL YVFGRDR GHF ETF DVGSN+P YEGF DGN KEF
Sbjct: 52 SHPVRKGLLNKLFPFYDELVYVFGRDRARGHFAETFTDVGSNEPIRYEGFDIPDGN-KEF 111
Query: 63 PSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQLR 122
PS+Y+QG +MSQ+DVRAS P+ E R GS+GSK++R Q E+E+I+ A EC NDQL+
Sbjct: 112 PSVYNQGINMSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMARECTNDQLK 171
Query: 123 MIAEWPSRTLQNETTIFQE 142
++AEWP+R L N+ + Q+
Sbjct: 172 IVAEWPARALANDNHVRQK 189
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0067019.1 | 1.6e-78 | 100.00 | retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon p... | [more] |
| KAA0055946.1 | 2.4e-45 | 67.39 | retrotransposon protein [Cucumis melo var. makuwa] >TYK28152.1 retrotransposon p... | [more] |
| KAA0033884.1 | 6.5e-43 | 62.50 | retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p... | [more] |
| KAA0050190.1 | 1.4e-42 | 65.49 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p... | [more] |
| KAA0065782.1 | 6.7e-40 | 60.43 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon p... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DS68 | 7.9e-79 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3DXB2 | 1.2e-45 | 67.39 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3BQI7 | 3.1e-43 | 62.50 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7U4I8 | 7.0e-43 | 65.49 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3BD15 | 3.2e-40 | 60.43 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
