MELO3C019104 (gene) Melon (DHL92) v4

Overview


Name	MELO3C019104
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Girdin-like
Location	chr05: 23740593 .. 23741834 (-)
RNA-Seq Expression	MELO3C019104
Synteny	MELO3C019104

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCAACATATCCAAGGAAGGAGGCTTGGGTGTCTTTCTGTGCAAAAATGACTTCTGAAAATATCATATGAAAGGCTCAATGGATGCCTTTAAAGGCGGTGATATATAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGATCATGGGGAGGTGTTAACTATACATCATTGTTAGTTTTGCGTCAGATGTGGCTCAAACAGTCTATACCACCAACTCATAATCTACAAAAGTCTAACTTTTCATATGATTATGAAGATTGTCAAGGAAAAAAACGTCGACCAGTATGCGCATGGAAATCCATGAGGAAGATAAAAGACAAAGTTCACTACGAAAGAGCTACCAGTGGATACGAGGCATGACAGGTAAACAGAAGGAAGAATATAATGGTTACCTTAAGGGATGTAGTTCAAAAAGGTAAAAGAGATAAGCTTTGAACAACCAAATCAGTGGGTTGAGAAGAGCATAGAATTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACCATATATACAAAGACAAGTCAATGAATGGATCATGCAACTTATTTACAGAAAGAACTTGAAAAGACCAAGAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAGAATCTTGAGGCGTTAGATAAGGAGATGAGACAAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTGCAAGCAACAGTGGAGTCGCAAGATAATATATTAAAGATTTAGAAAGTGGGAAGGTTCTCGAGCTTACCAATGATTTGAATACATCAATTGGAAAACAGAAAACACAAATAGTGGATTTGGAAGCACACAATCATTATTTGCATCAAATTGTTGATAGCCTACATCTGAAGATTGCCGAGCACTCTAAAGAGTATGAGATACTGAAAAATTATGCTAATTCCTTACATTATTAACTTACTGTATTTCAAAATTCAAGTGAGAGGATAGTGCAGGAACATGAGTCATTGAAGACGGATTGCATGAAAATGAAGGTTGATTATGATCTACAAATGAGAGATTTTCAAGTGCTAGTGGAACGTGTAGATTAGACGATTTTGAGGGTTAATTGTTTCTCAGTGCAACCTCATGCAGATCATCTAAATAGATTCTTGAAGATGATATGTAGAGAACTCGGACATTTTAGTCGTTTTCATTAAATTGTTTGTTTTGCTGTTAATGACAATAAGAGTGATATTTATTACATTTGTTTGTCTCTGGTTTTAGTTTGATTTTTA

mRNA sequence

ATCCAACATATCCAAGGAAGGAGGCTTGGGTGTCTTTCTGTGCAAAAATGACTTCTGAAAATATCATATGAAAGGCTCAATGGATGCCTTTAAAGGCGGTGATATATAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGATCATGGGGAGGTGTTAACTATACATCATTGTTAGTTTTGCGTCAGATGTGGCTCAAACAGTCTATACCACCAACTCATAATCTACAAAAGTCTAACTTTTCATATGATTATGAAGATTGTCAAGGAAAAAAACGTCGACCAGTATGCGCATGGAAATCCATGAGGAAGATAAAAGACAAAGTTCACTACGAAAGAGCTACCAGTGGATACGAGGCATGACAGGTAAACAGAAGGAAGAATATAATGGTTACCTTAAGGGATGTAGTTCAAAAAGGTAAAAGAGATAAGCTTTGAACAACCAAATCAGTGGGTTGAGAAGAGCATAGAATTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACCATATATACAAAGACAAGTCAATGAATGGATCATGCAACTTATTTACAGAAAGAACTTGAAAAGACCAAGAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAGAATCTTGAGGCGTTAGATAAGGAGATGAGACAAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTGCAAGCAACAGTGGAGTCGCAAGATAATATATTAAAGATTTAGAAAGTGGGAAGGTTCTCGAGCTTACCAATGATTTGAATACATCAATTGGAAAACAGAAAACACAAATAGTGGATTTGGAAGCACACAATCATTATTTGCATCAAATTGTTGATAGCCTACATCTGAAGATTGCCGAGCACTCTAAAGAGTATGAGATACTGAAAAATTATGCTAATTCCTTACATTATTAACTTACTGTATTTCAAAATTCAAGTGAGAGGATAGTGCAGGAACATGAGTCATTGAAGACGGATTGCATGAAAATGAAGGTTGATTATGATCTACAAATGAGAGATTTTCAAGTGCTAGTGGAACGTGTAGATTAGACGATTTTGAGGGTTAATTGTTTCTCAGTGCAACCTCATGCAGATCATCTAAATAGATTCTTGAAGATGATATGTAGAGAACTCGGACATTTTAGTCGTTTTCATTAAATTGTTTGTTTTGCTGTTAATGACAATAAGAGTGATATTTATTACATTTGTTTGTCTCTGGTTTTAGTTTGATTTTTA

Coding sequence (CDS)

ATGCCTTTAAAGGCGGTGATATATAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGATCATGGGGAGGTGTTAACTATACATCATTGTTAGTTTTGCGTCAGATGTGGCTCAAACAGTCTATACCACCAACTCATAATCTACAAAAGTCTAACTTTTCATATGATTATGAAGATTGTCAAGGAAAAAAACGTCGACCAGTATGCGCATGGAAATCCATGAGGAAGATAAAAGACAAAGTTCACTACGAAAGAGCTACCAGTGGATACGAGGCATGA

Protein sequence

MPLKAVIYRCGDFHSVPLLGSWGGVNYTSLLVLRQMWLKQSIPPTHNLQKSNFSYDYEDCQGKKRRPVCAWKSMRKIKDKVHYERATSGYEA

Homology

[Close]

BLAST of MELO3C019104 vs. NCBI nr
Match: KAA0036941.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 7.3e-40
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1   MPLKAVIYRCGDFHSVPLLGSWGGVNYTSLLVLRQMWLKQSIPPTHNLQKSNFSYDYEDC 60
           MPLKAVIYRCGDFHSVPLLG WGGVNYT LLVLRQ+WLKQ IPPTHNLQ+S+FSYD EDC
Sbjct: 298 MPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDC 357

Query: 61  QGKKRRPVCAWKSMRKIKDKVHYERATSGYEA 93
           QGKKR+ VCAWKS+RKIKDK HYE  TSGYEA
Sbjct: 358 QGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEA 389

[Close]

BLAST of MELO3C019104 vs. NCBI nr
Match: TYK16558.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 7.3e-40
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1   MPLKAVIYRCGDFHSVPLLGSWGGVNYTSLLVLRQMWLKQSIPPTHNLQKSNFSYDYEDC 60
           MPLKAVIYRCGDFHSVPLLG WGGVNYT LLVLRQ+WLKQ IPPTHNLQ+S+FSYD EDC
Sbjct: 33  MPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDC 92

Query: 61  QGKKRRPVCAWKSMRKIKDKVHYERATSGYEA 93
           QGKKR+ VCAWKS+RKIKDK HYE  TSGYEA
Sbjct: 93  QGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEA 124

[Close]

BLAST of MELO3C019104 vs. NCBI nr
Match: KAA0044912.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 7.3e-40
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1   MPLKAVIYRCGDFHSVPLLGSWGGVNYTSLLVLRQMWLKQSIPPTHNLQKSNFSYDYEDC 60
           MPLKAVIYRCGDFHSVPLLG WGGVNYT LLVLRQ+WLKQ IPPTHNLQ+S+FSYD EDC
Sbjct: 142 MPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDC 201

Query: 61  QGKKRRPVCAWKSMRKIKDKVHYERATSGYEA 93
           QGKKR+ VCAWKS+RKIKDK HYE  TSGYEA
Sbjct: 202 QGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEA 233

[Close]

BLAST of MELO3C019104 vs. NCBI nr
Match: TYK23955.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 78/92 (84.78%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1   MPLKAVIYRCGDFHSVPLLGSWGGVNYTSLLVLRQMWLKQSIPPTHNLQKSNFSYDYEDC 60
           MPLKAVIYRCGDFHSVPLLG WGGVNY  LLVLRQ+WLKQ IPPTHNLQ+S+FSYD EDC
Sbjct: 75  MPLKAVIYRCGDFHSVPLLGPWGGVNYLPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDC 134

Query: 61  QGKKRRPVCAWKSMRKIKDKVHYERATSGYEA 93
           QGKKR+ VCAWKS+RKIKDK HYE  TSGYEA
Sbjct: 135 QGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEA 166

[Close]

BLAST of MELO3C019104 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 78/92 (84.78%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MPLKAVIYRCGDFHSVPLLGSWGGVNYTSLLVLRQMWLKQSIPPTHNLQKSNFSYDYEDC 60
          MPLKAVIYRCGDFHSVPLLG WGGVNY  LLVLRQ+WLKQ IPPTHNLQ+S+FSYD EDC
Sbjct: 1  MPLKAVIYRCGDFHSVPLLGPWGGVNYLPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDC 60

Query: 61 QGKKRRPVCAWKSMRKIKDKVHYERATSGYEA 93
          QGKKR+ VCAWKS+RKIKDK HYE  TSGYEA
Sbjct: 61 QGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEA 92

[Close]

BLAST of MELO3C019104 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.5e-40
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1   MPLKAVIYRCGDFHSVPLLGSWGGVNYTSLLVLRQMWLKQSIPPTHNLQKSNFSYDYEDC 60
           MPLKAVIYRCGDFHSVPLLG WGGVNYT LLVLRQ+WLKQ IPPTHNLQ+S+FSYD EDC
Sbjct: 298 MPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDC 357

Query: 61  QGKKRRPVCAWKSMRKIKDKVHYERATSGYEA 93
           QGKKR+ VCAWKS+RKIKDK HYE  TSGYEA
Sbjct: 358 QGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEA 389

[Close]

BLAST of MELO3C019104 vs. ExPASy TrEMBL
Match: A0A5D3CZ50 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.5e-40
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1   MPLKAVIYRCGDFHSVPLLGSWGGVNYTSLLVLRQMWLKQSIPPTHNLQKSNFSYDYEDC 60
           MPLKAVIYRCGDFHSVPLLG WGGVNYT LLVLRQ+WLKQ IPPTHNLQ+S+FSYD EDC
Sbjct: 33  MPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDC 92

Query: 61  QGKKRRPVCAWKSMRKIKDKVHYERATSGYEA 93
           QGKKR+ VCAWKS+RKIKDK HYE  TSGYEA
Sbjct: 93  QGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEA 124

[Close]

BLAST of MELO3C019104 vs. ExPASy TrEMBL
Match: A0A5A7TNJ1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.5e-40
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1   MPLKAVIYRCGDFHSVPLLGSWGGVNYTSLLVLRQMWLKQSIPPTHNLQKSNFSYDYEDC 60
           MPLKAVIYRCGDFHSVPLLG WGGVNYT LLVLRQ+WLKQ IPPTHNLQ+S+FSYD EDC
Sbjct: 142 MPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDC 201

Query: 61  QGKKRRPVCAWKSMRKIKDKVHYERATSGYEA 93
           QGKKR+ VCAWKS+RKIKDK HYE  TSGYEA
Sbjct: 202 QGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEA 233

[Close]

BLAST of MELO3C019104 vs. ExPASy TrEMBL
Match: A0A5D3DK34 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 78/92 (84.78%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1   MPLKAVIYRCGDFHSVPLLGSWGGVNYTSLLVLRQMWLKQSIPPTHNLQKSNFSYDYEDC 60
           MPLKAVIYRCGDFHSVPLLG WGGVNY  LLVLRQ+WLKQ IPPTHNLQ+S+FSYD EDC
Sbjct: 75  MPLKAVIYRCGDFHSVPLLGPWGGVNYLPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDC 134

Query: 61  QGKKRRPVCAWKSMRKIKDKVHYERATSGYEA 93
           QGKKR+ VCAWKS+RKIKDK HYE  TSGYEA
Sbjct: 135 QGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEA 166

[Close]

BLAST of MELO3C019104 vs. ExPASy TrEMBL
Match: A0A1S4DX26 (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 78/92 (84.78%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MPLKAVIYRCGDFHSVPLLGSWGGVNYTSLLVLRQMWLKQSIPPTHNLQKSNFSYDYEDC 60
          MPLKAVIYRCGDFHSVPLLG WGGVNY  LLVLRQ+WLKQ IPPTHNLQ+S+FSYD EDC
Sbjct: 1  MPLKAVIYRCGDFHSVPLLGPWGGVNYLPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDC 60

Query: 61 QGKKRRPVCAWKSMRKIKDKVHYERATSGYEA 93
          QGKKR+ VCAWKS+RKIKDK HYE  TSGYEA
Sbjct: 61 QGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEA 92

The following BLAST results are available for this feature:

BLAST of MELO3C019104 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036941.1	7.3e-40	85.87	girdin-like [Cucumis melo var. makuwa]	[more]
TYK16558.1	7.3e-40	85.87	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0044912.1	7.3e-40	85.87	girdin-like [Cucumis melo var. makuwa]	[more]
TYK23955.1	2.1e-39	84.78	girdin-like [Cucumis melo var. makuwa]	[more]
XP_016900531.1	2.1e-39	84.78	PREDICTED: girdin-like [Cucumis melo]	[more]

BLAST of MELO3C019104 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C019104 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5S7	3.5e-40	85.87	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=...	[more]
A0A5D3CZ50	3.5e-40	85.87	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE...	[more]
A0A5A7TNJ1	3.5e-40	85.87	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE...	[more]
A0A5D3DK34	1.0e-39	84.78	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE...	[more]
A0A1S4DX26	1.0e-39	84.78	girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1	[more]

BLAST of MELO3C019104 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48200	PROTEIN, PUTATIVE-RELATED	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019104.1	MELO3C019104.1	mRNA