MELO3C019073 (gene) Melon (DHL92) v4

Overview
NameMELO3C019073
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionFlagellar basal-body rod protein FlgB
Locationchr08: 11340105 .. 11340527 (-)
RNA-Seq ExpressionMELO3C019073
SyntenyMELO3C019073
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAATCCATCTAAAATGGACACCAAAATTGTACACTCCGACAGTCTTATGTCAGAGCAAGCACAACTTGCGTCCACATCGTATAATAAAGCATTATCAAGTTTAAGTGAGATATTTGGAATAGAAAGGTCGAACCCTTTCAAATTCAAGGGCAAAGAGATACCCATGACGGATGAAAATATTGGAATGATGCTGAAGTTACTCCTTGAAGAAAGTAATAGAAGGGAAAAATTGAAAGAAGAAGTTGAAAAGAAGAAGAAAGAAGACGAGGAGAAGGCGAGGAAACAAAAGATTGAGAAGGAGAAGCTCATAAAGGAAGAAGAAGAGTGGAAAAAGAAGAGGGAGGACGAAGAGAAAGAAAAAGAAAGAGAGAGAAATAGAAGAGAAAGAAGGAACCTCCTCGCCAATAGCCGAAACTAA

mRNA sequence

ATGGCCAATCCATCTAAAATGGACACCAAAATTGTACACTCCGACAGTCTTATGTCAGAGCAAGCACAACTTGCGTCCACATCGTATAATAAAGCATTATCAAGTTTAAGTGAGATATTTGGAATAGAAAGGTCGAACCCTTTCAAATTCAAGGGCAAAGAGATACCCATGACGGATGAAAATATTGGAATGATGCTGAAGTTACTCCTTGAAGAAAGTAATAGAAGGGAAAAATTGAAAGAAGAAGTTGAAAAGAAGAAGAAAGAAGACGAGGAGAAGGCGAGGAAACAAAAGATTGAGAAGGAGAAGCTCATAAAGGAAGAAGAAGAGTGGAAAAAGAAGAGGGAGGACGAAGAGAAAGAAAAAGAAAGAGAGAGAAATAGAAGAGAAAGAAGGAACCTCCTCGCCAATAGCCGAAACTAA

Coding sequence (CDS)

ATGGCCAATCCATCTAAAATGGACACCAAAATTGTACACTCCGACAGTCTTATGTCAGAGCAAGCACAACTTGCGTCCACATCGTATAATAAAGCATTATCAAGTTTAAGTGAGATATTTGGAATAGAAAGGTCGAACCCTTTCAAATTCAAGGGCAAAGAGATACCCATGACGGATGAAAATATTGGAATGATGCTGAAGTTACTCCTTGAAGAAAGTAATAGAAGGGAAAAATTGAAAGAAGAAGTTGAAAAGAAGAAGAAAGAAGACGAGGAGAAGGCGAGGAAACAAAAGATTGAGAAGGAGAAGCTCATAAAGGAAGAAGAAGAGTGGAAAAAGAAGAGGGAGGACGAAGAGAAAGAAAAAGAAAGAGAGAGAAATAGAAGAGAAAGAAGGAACCTCCTCGCCAATAGCCGAAACTAA

Protein sequence

MANPSKMDTKIVHSDSLMSEQAQLASTSYNKALSSLSEIFGIERSNPFKFKGKEIPMTDENIGMMLKLLLEESNRREKLKEEVEKKKKEDEEKARKQKIEKEKLIKEEEEWKKKREDEEKEKERERNRRERRNLLANSRN
Homology
BLAST of MELO3C019073 vs. NCBI nr
Match: KAA0062631.1 (hypothetical protein E6C27_scaffold79G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-21
Identity = 75/119 (63.03%), Postives = 92/119 (77.31%), Query Frame = 0

Query: 2   ANPSKMDTKIVHSDSLMSEQAQLASTSYNKALSSLSEIFGIERSNPFKFKGKEIPMTDEN 61
           ANP K DT++VHS   +SEQAQLAS+S NKAL S  E+FG +  NPF FK KE+ MT+EN
Sbjct: 45  ANPFKRDTEVVHSHGPVSEQAQLASSSLNKALPSSREVFGTKGWNPFSFKSKEVLMTNEN 104

Query: 62  IGMMLKLLLEESNRREKLKEEVEKKKKEDEEKARKQKIEKEKLIKEEEEWKKKREDEEK 121
           I  +  LL+EESN+R + KEEVEKK+KEDEEKARK+K E+E+  K EEE KKK+EDE K
Sbjct: 105 IDFITNLLMEESNKRAETKEEVEKKRKEDEEKARKEKAEEEERNKREEE-KKKKEDERK 162

BLAST of MELO3C019073 vs. NCBI nr
Match: TYK11051.1 (hypothetical protein E5676_scaffold73G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 7.5e-12
Identity = 44/69 (63.77%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 2  ANPSKMDTKIVHSDSLMSEQAQLASTSYNKALSSLSEIFGIERSNPFKFKGKEIPMTDEN 61
          A+   MD KIV SD  +SEQ QL  TS+NKAL S S +FG E  NPF FKGK IPM D+N
Sbjct: 19 ADQFAMDIKIVRSDGPVSEQRQLGCTSHNKALPSSSSVFGTEGWNPFNFKGKVIPMIDDN 78

Query: 62 IGMMLKLLL 71
          I MMLKLLL
Sbjct: 79 IAMMLKLLL 87

BLAST of MELO3C019073 vs. NCBI nr
Match: KGN58057.2 (hypothetical protein Csa_011332 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 7.8e-09
Identity = 53/106 (50.00%), Postives = 78/106 (73.58%), Query Frame = 0

Query: 15  DSLMSEQAQLASTSYNK--ALSSLSEIFGIERSNPFKFKGKEIPMTDENIGMMLKLLLEE 74
           D  +SEQAQ+    YN+   LS  SEIFGIE  N F F G+EIP+T ++I +ML L LEE
Sbjct: 25  DGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDDIEVMLGLFLEE 84

Query: 75  SNRREKLKEEVEKKKKEDEEKARKQKIEKEKLIKEEEEWKKKREDE 119
           + RRE+L EE EK++KED++KARK++++KE+  +++E+ +K  ED+
Sbjct: 85  NQRRERLMEEAEKRQKEDDKKARKEQLDKER--EKKEQLEKNEEDK 128

BLAST of MELO3C019073 vs. NCBI nr
Match: KGN57782.1 (hypothetical protein Csa_010186 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-06
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 6   KMDTKIVHSDSLMSEQAQLASTSYNKALSSLSEIFGIERSNPFKFKGKEIPMTDENIGMM 65
           K + ++V SD  MSEQAQ    S+ + L S S+IFG E  NPF F+G+EI MT EN+ +M
Sbjct: 12  KSELEVVRSDGRMSEQAQ---PSFVQTLPSSSDIFGAEGFNPFNFQGREISMTAENLEIM 71

Query: 66  LKLLLEESNRREKLKEEVEKKKKEDEEKARKQK 99
           L L LEE+ RREKL+E    +K+    + RK+K
Sbjct: 72  LGLFLEENKRREKLRETYGGEKESRGGRKRKKK 101

BLAST of MELO3C019073 vs. NCBI nr
Match: TYK25880.1 (flagellar basal-body rod protein FlgB [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 8.0e-06
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1  MANPSKMDTKIVHSDSLMSEQAQLASTSYNKALSSLSEIFGIERSNPFKFKGKEIPMTDE 60
          +AN S+ D KI+  D  + +QAQLAS+S+N+ L   SE+FG +  NPF   GKE+P+ DE
Sbjct: 18 IANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTDGWNPFNLNGKEMPIIDE 77

Query: 61 NI 63
          NI
Sbjct: 78 NI 79

BLAST of MELO3C019073 vs. ExPASy TrEMBL
Match: A0A5A7VAE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001420 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 75/119 (63.03%), Postives = 92/119 (77.31%), Query Frame = 0

Query: 2   ANPSKMDTKIVHSDSLMSEQAQLASTSYNKALSSLSEIFGIERSNPFKFKGKEIPMTDEN 61
           ANP K DT++VHS   +SEQAQLAS+S NKAL S  E+FG +  NPF FK KE+ MT+EN
Sbjct: 45  ANPFKRDTEVVHSHGPVSEQAQLASSSLNKALPSSREVFGTKGWNPFSFKSKEVLMTNEN 104

Query: 62  IGMMLKLLLEESNRREKLKEEVEKKKKEDEEKARKQKIEKEKLIKEEEEWKKKREDEEK 121
           I  +  LL+EESN+R + KEEVEKK+KEDEEKARK+K E+E+  K EEE KKK+EDE K
Sbjct: 105 IDFITNLLMEESNKRAETKEEVEKKRKEDEEKARKEKAEEEERNKREEE-KKKKEDERK 162

BLAST of MELO3C019073 vs. ExPASy TrEMBL
Match: A0A5D3CGX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00340 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-12
Identity = 44/69 (63.77%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 2  ANPSKMDTKIVHSDSLMSEQAQLASTSYNKALSSLSEIFGIERSNPFKFKGKEIPMTDEN 61
          A+   MD KIV SD  +SEQ QL  TS+NKAL S S +FG E  NPF FKGK IPM D+N
Sbjct: 19 ADQFAMDIKIVRSDGPVSEQRQLGCTSHNKALPSSSSVFGTEGWNPFNFKGKVIPMIDDN 78

Query: 62 IGMMLKLLL 71
          I MMLKLLL
Sbjct: 79 IAMMLKLLL 87

BLAST of MELO3C019073 vs. ExPASy TrEMBL
Match: A0A0A0LBL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G427420 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.8e-09
Identity = 53/106 (50.00%), Postives = 78/106 (73.58%), Query Frame = 0

Query: 15  DSLMSEQAQLASTSYNK--ALSSLSEIFGIERSNPFKFKGKEIPMTDENIGMMLKLLLEE 74
           D  +SEQAQ+    YN+   LS  SEIFGIE  N F F G+EIP+T ++I +ML L LEE
Sbjct: 8   DGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDDIEVMLGLFLEE 67

Query: 75  SNRREKLKEEVEKKKKEDEEKARKQKIEKEKLIKEEEEWKKKREDE 119
           + RRE+L EE EK++KED++KARK++++KE+  +++E+ +K  ED+
Sbjct: 68  NQRRERLMEEAEKRQKEDDKKARKEQLDKER--EKKEQLEKNEEDK 111

BLAST of MELO3C019073 vs. ExPASy TrEMBL
Match: A0A0A0LAT2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298590 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.0e-07
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 6   KMDTKIVHSDSLMSEQAQLASTSYNKALSSLSEIFGIERSNPFKFKGKEIPMTDENIGMM 65
           K + ++V SD  MSEQAQ    S+ + L S S+IFG E  NPF F+G+EI MT EN+ +M
Sbjct: 12  KSELEVVRSDGRMSEQAQ---PSFVQTLPSSSDIFGAEGFNPFNFQGREISMTAENLEIM 71

Query: 66  LKLLLEESNRREKLKEEVEKKKKEDEEKARKQK 99
           L L LEE+ RREKL+E    +K+    + RK+K
Sbjct: 72  LGLFLEENKRREKLRETYGGEKESRGGRKRKKK 101

BLAST of MELO3C019073 vs. ExPASy TrEMBL
Match: A0A0A0KJ97 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G026440 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.6e-04
Identity = 47/105 (44.76%), Postives = 67/105 (63.81%), Query Frame = 0

Query: 6   KMDTKIVHSDSLMSEQAQLASTSYNKALSSLSEIFGIERSNPFKFKGKEIPMTDENIGMM 65
           + +TK+V  D  +SEQAQ  ST   + + + SE+   E  NPFKF+  EI +TDENIG  
Sbjct: 16  RKNTKVVCFDGPVSEQAQHDSTPQTETMRNSSEVLETEGWNPFKFQWMEISITDENIG-- 75

Query: 66  LKLLLEESNRREKLKEEVEKKKKEDEEKARKQKIEKEKLIKEEEE 111
            K+LL++ NRR + KE VE+K+KE EE       E E++I+E+ E
Sbjct: 76  -KMLLDKRNRRGRAKEGVEEKQKEMEEIGE----EMEEIIEEQCE 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0062631.13.0e-2163.03hypothetical protein E6C27_scaffold79G001420 [Cucumis melo var. makuwa][more]
TYK11051.17.5e-1263.77hypothetical protein E5676_scaffold73G00340 [Cucumis melo var. makuwa][more]
KGN58057.27.8e-0950.00hypothetical protein Csa_011332 [Cucumis sativus][more]
KGN57782.11.2e-0648.39hypothetical protein Csa_010186 [Cucumis sativus][more]
TYK25880.18.0e-0650.00flagellar basal-body rod protein FlgB [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VAE21.5e-2163.03Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CGX23.6e-1263.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LBL23.8e-0950.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G427420 PE=4 SV=1[more]
A0A0A0LAT26.0e-0748.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298590 PE=4 SV=1[more]
A0A0A0KJ973.6e-0444.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G026440 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 66..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019073.1MELO3C019073.1mRNA