MELO3C018940 (gene) Melon (DHL92) v4

Overview


Name	MELO3C018940
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon gag protein
Location	chr07: 13545526 .. 13545894 (-)
RNA-Seq Expression	MELO3C018940
Synteny	MELO3C018940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTAGTTTTCTTTCAAAATCCTAAGTCTACACTGGAAAACTCATCCCTTTCACCGCGAAACTCATCGAAAACTTCATCCGTCAATCAATCACATGGTGGGAAACAAAAGAAAAACCCAGAAACTCCTATCATCTCAAAGTTCATGAAGAAGGAAGAGGAGACATCCAAACCCTTTCCCGCCAAGAAACCCATCACCGACCAAACCAACAAGCTTTACGAATCCTCTTCGCAGAAGCTGAGACCTGAGGGCTTTACGAGGAAGATAACCATCAAGCCAAGAACATTTGAAACCTTCTCTGAAATTCACTTCGTTAGGCCAAATTTGAAAGAAGCTCAAAGACCCAAAGACCTAAAGAAAAGGCCATAG

mRNA sequence

AATTTAGTTTTCTTTCAAAATCCTAAGTCTACACTGGAAAACTCATCCCTTTCACCGCGAAACTCATCGAAAACTTCATCCGTCAATCAATCACATGGTGGGAAACAAAAGAAAAACCCAGAAACTCCTATCATCTCAAAGTTCATGAAGAAGGAAGAGGAGACATCCAAACCCTTTCCCGCCAAGAAACCCATCACCGACCAAACCAACAAGCTTTACGAATCCTCTTCGCAGAAGCTGAGACCTGAGGGCTTTACGAGGAAGATAACCATCAAGCCAAGAACATTTGAAACCTTCTCTGAAATTCACTTCGTTAGGCCAAATTTGAAAGAAGCTCAAAGACCCAAAGACCTAAAGAAAAGGCCATAG

Coding sequence (CDS)

AATTTAGTTTTCTTTCAAAATCCTAAGTCTACACTGGAAAACTCATCCCTTTCACCGCGAAACTCATCGAAAACTTCATCCGTCAATCAATCACATGGTGGGAAACAAAAGAAAAACCCAGAAACTCCTATCATCTCAAAGTTCATGAAGAAGGAAGAGGAGACATCCAAACCCTTTCCCGCCAAGAAACCCATCACCGACCAAACCAACAAGCTTTACGAATCCTCTTCGCAGAAGCTGAGACCTGAGGGCTTTACGAGGAAGATAACCATCAAGCCAAGAACATTTGAAACCTTCTCTGAAATTCACTTCGTTAGGCCAAATTTGAAAGAAGCTCAAAGACCCAAAGACCTAAAGAAAAGGCCATAG

Protein sequence

NLVFFQNPKSTLENSSLSPRNSSKTSSVNQSHGGKQKKNPETPIISKFMKKEEETSKPFPAKKPITDQTNKLYESSSQKLRPEGFTRKITIKPRTFETFSEIHFVRPNLKEAQRPKDLKKRP

Homology

[Close]

BLAST of MELO3C018940 vs. NCBI nr
Match: TYK15851.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 4.5e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 9   KSTLENSSLSPRNSSKTSSVNQSHGGKQKKNPETPIISKFMKKEEETSKPFPAKKPITDQ 68
           KSTLENSSLSPRNSSKTSSVNQSHGGKQKKNPETPIISKFMKKEEETSKPFPAKKPITDQ
Sbjct: 114 KSTLENSSLSPRNSSKTSSVNQSHGGKQKKNPETPIISKFMKKEEETSKPFPAKKPITDQ 173

Query: 69  TNKLYESSSQKLRPEGFTRKITIKPRTFETFSEIHFVRPNLKEAQRPKDLKKRP 123
           TNKLYESSSQKLRPEGFTRKITIKPRTFETFSEIHFVRPNLKEAQRPKDLKKRP
Sbjct: 174 TNKLYESSSQKLRPEGFTRKITIKPRTFETFSEIHFVRPNLKEAQRPKDLKKRP 227

[Close]

BLAST of MELO3C018940 vs. NCBI nr
Match: KAA0053378.1 (uncharacterized protein E6C27_scaffold428G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 210.3 bits (534), Expect = 9.3e-51
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 6   QNPKSTLENSSLSPRNSSKTSSVNQSHGGKQKKNPETPIISKFMKKEEETSKPFPAKKPI 65
           Q  K TLENSSLSPRNSSKTSSVNQSHGGKQKKNPETPIISKFMKKEEETSKPFPAKKPI
Sbjct: 37  QRLKPTLENSSLSPRNSSKTSSVNQSHGGKQKKNPETPIISKFMKKEEETSKPFPAKKPI 96

Query: 66  TDQTNKLYESSSQKLRPEGFTRKITIKPRTFETFSEIHFVRPNLKEAQRPKDLKKRP 123
           TDQTNKL+ESSSQKLRPEGFTRKITIKPRTFET S+IHFVRPNLKEAQRPKDLKKRP
Sbjct: 97  TDQTNKLHESSSQKLRPEGFTRKITIKPRTFETSSQIHFVRPNLKEAQRPKDLKKRP 153

[Close]

BLAST of MELO3C018940 vs. NCBI nr
Match: KAA0040552.1 (stress response protein NST1-like [Cucumis melo var. makuwa] >TYK05595.1 stress response protein NST1-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 35  KQKKNPETPIISKFMKKEEETSKPFPAKKPITDQTNKLYESSSQKLRPEGFTRKITIKPR 94
           KQKKN ET   SK   K++E+S  F AK P   + +K +ESS QK RPE   +KI+IKP 
Sbjct: 4   KQKKNLETSFTSKLTSKKDESSTQFDAKHP---EQSKTHESSYQKSRPEVPGKKISIKPI 63

Query: 95  TFETFSEIHFVRPNLKEAQRPK 117
              T  + H VRP+ K+AQR K
Sbjct: 64  IKTTSFQSHSVRPDSKQAQRSK 82

[Close]

BLAST of MELO3C018940 vs. ExPASy TrEMBL
Match: A0A5D3CVB3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00270 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.2e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 9   KSTLENSSLSPRNSSKTSSVNQSHGGKQKKNPETPIISKFMKKEEETSKPFPAKKPITDQ 68
           KSTLENSSLSPRNSSKTSSVNQSHGGKQKKNPETPIISKFMKKEEETSKPFPAKKPITDQ
Sbjct: 114 KSTLENSSLSPRNSSKTSSVNQSHGGKQKKNPETPIISKFMKKEEETSKPFPAKKPITDQ 173

Query: 69  TNKLYESSSQKLRPEGFTRKITIKPRTFETFSEIHFVRPNLKEAQRPKDLKKRP 123
           TNKLYESSSQKLRPEGFTRKITIKPRTFETFSEIHFVRPNLKEAQRPKDLKKRP
Sbjct: 174 TNKLYESSSQKLRPEGFTRKITIKPRTFETFSEIHFVRPNLKEAQRPKDLKKRP 227

[Close]

BLAST of MELO3C018940 vs. ExPASy TrEMBL
Match: A0A5A7UE85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00370 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.5e-51
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 6   QNPKSTLENSSLSPRNSSKTSSVNQSHGGKQKKNPETPIISKFMKKEEETSKPFPAKKPI 65
           Q  K TLENSSLSPRNSSKTSSVNQSHGGKQKKNPETPIISKFMKKEEETSKPFPAKKPI
Sbjct: 37  QRLKPTLENSSLSPRNSSKTSSVNQSHGGKQKKNPETPIISKFMKKEEETSKPFPAKKPI 96

Query: 66  TDQTNKLYESSSQKLRPEGFTRKITIKPRTFETFSEIHFVRPNLKEAQRPKDLKKRP 123
           TDQTNKL+ESSSQKLRPEGFTRKITIKPRTFET S+IHFVRPNLKEAQRPKDLKKRP
Sbjct: 97  TDQTNKLHESSSQKLRPEGFTRKITIKPRTFETSSQIHFVRPNLKEAQRPKDLKKRP 153

[Close]

BLAST of MELO3C018940 vs. ExPASy TrEMBL
Match: A0A5A7TAU0 (Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00450 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.8e-06
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 35  KQKKNPETPIISKFMKKEEETSKPFPAKKPITDQTNKLYESSSQKLRPEGFTRKITIKPR 94
           KQKKN ET   SK   K++E+S  F AK P   + +K +ESS QK RPE   +KI+IKP 
Sbjct: 4   KQKKNLETSFTSKLTSKKDESSTQFDAKHP---EQSKTHESSYQKSRPEVPGKKISIKPI 63

Query: 95  TFETFSEIHFVRPNLKEAQRPK 117
              T  + H VRP+ K+AQR K
Sbjct: 64  IKTTSFQSHSVRPDSKQAQRSK 82

The following BLAST results are available for this feature:

BLAST of MELO3C018940 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15851.1	4.5e-53	100.00	Retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0053378.1	9.3e-51	94.87	uncharacterized protein E6C27_scaffold428G00370 [Cucumis melo var. makuwa]	[more]
KAA0040552.1	1.2e-05	48.78	stress response protein NST1-like [Cucumis melo var. makuwa] >TYK05595.1 stress ...	[more]

BLAST of MELO3C018940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C018940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVB3	2.2e-53	100.00	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UE85	4.5e-51	94.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TAU0	5.8e-06	48.78	Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of MELO3C018940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018940.1	MELO3C018940.1	mRNA