MELO3C018923 (gene) Melon (DHL92) v4

Overview
NameMELO3C018923
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionLPS-induced tumor necrosis factor alpha factor
Locationchr07: 13118394 .. 13118570 (+)
RNA-Seq ExpressionMELO3C018923
SyntenyMELO3C018923
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGATGTATCGGCAACTTTGAAGATGGCGATTGACTGTGCTTCGGCAGTGGCAATGGGTGCATCGGTGGTTATGACAGTGGCACCAATGTTGACCCCAGTTGTTGCTCCTGTCATGGCTGCAACCACTGTTGCTACATCGGTCACTGGTGTTATGGAGATTTTAGGATTTTGA

mRNA sequence

ATGGGAGATGTATCGGCAACTTTGAAGATGGCGATTGACTGTGCTTCGGCAGTGGCAATGGGTGCATCGGTGGTTATGACAGTGGCACCAATGTTGACCCCAGTTGTTGCTCCTGTCATGGCTGCAACCACTGTTGCTACATCGGTCACTGGTGTTATGGAGATTTTAGGATTTTGA

Coding sequence (CDS)

ATGGGAGATGTATCGGCAACTTTGAAGATGGCGATTGACTGTGCTTCGGCAGTGGCAATGGGTGCATCGGTGGTTATGACAGTGGCACCAATGTTGACCCCAGTTGTTGCTCCTGTCATGGCTGCAACCACTGTTGCTACATCGGTCACTGGTGTTATGGAGATTTTAGGATTTTGA

Protein sequence

MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILGF
Homology
[Close]
BLAST of MELO3C018923 vs. NCBI nr
Match: TYJ99647.1 (hypothetical protein E5676_scaffold562G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILGF 59
          MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILGF
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILGF 58

[Close]
BLAST of MELO3C018923 vs. NCBI nr
Match: KAA0054811.1 (hypothetical protein E6C27_scaffold437G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 5.5e-17
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILGF 59
          MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMA+TTVATSVTGVMEILGF
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILGF 58

[Close]
BLAST of MELO3C018923 vs. NCBI nr
Match: TYK09492.1 (hypothetical protein E5676_scaffold499G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILG 58
          M DVSA LKMA DCA AVA GASVVMTVAPMLTPVVAPVM A  V TSVT V+ +LG
Sbjct: 1  MADVSAALKMAADCAPAVATGASVVMTVAPMLTPVVAPVMVAANVVTSVTVVLRVLG 57

[Close]
BLAST of MELO3C018923 vs. NCBI nr
Match: KAA0068093.1 (LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa] >TYK26075.1 LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 13  DCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILG 58
           DCA  VA GASVVMTVAPMLTPVVAPVMAA TVATS+TGVM ILG
Sbjct: 183 DCAPVVATGASVVMTVAPMLTPVVAPVMAAATVATSITGVMGILG 227

[Close]
BLAST of MELO3C018923 vs. NCBI nr
Match: KGN65426.1 (hypothetical protein Csa_019847 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 6.7e-07
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 0 

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILG 58
          MGD    LK+A DCA AVA  ++VVMTVAP L PVVAPVM A TV TSVTGV++I G
Sbjct: 19 MGDFGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG 75

[Close]
BLAST of MELO3C018923 vs. ExPASy TrEMBL
Match: A0A5D3BKI7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00240 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILGF 59
          MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILGF
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILGF 58

[Close]
BLAST of MELO3C018923 vs. ExPASy TrEMBL
Match: A0A5A7UMM6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00990 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-17
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILGF 59
          MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMA+TTVATSVTGVMEILGF
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILGF 58

[Close]
BLAST of MELO3C018923 vs. ExPASy TrEMBL
Match: A0A5D3CE01 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00920 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILG 58
          M DVSA LKMA DCA AVA GASVVMTVAPMLTPVVAPVM A  V TSVT V+ +LG
Sbjct: 1  MADVSAALKMAADCAPAVATGASVVMTVAPMLTPVVAPVMVAANVVTSVTVVLRVLG 57

[Close]
BLAST of MELO3C018923 vs. ExPASy TrEMBL
Match: A0A5D3DRF6 (LPS-induced tumor necrosis factor alpha factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00340 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 13  DCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILG 58
           DCA  VA GASVVMTVAPMLTPVVAPVMAA TVATS+TGVM ILG
Sbjct: 183 DCAPVVATGASVVMTVAPMLTPVVAPVMAAATVATSITGVMGILG 227

[Close]
BLAST of MELO3C018923 vs. ExPASy TrEMBL
Match: A0A0A0LZP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420870 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-07
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 0 

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILG 58
          MGD    LK+A DCA AVA  ++VVMTVAP L PVVAPVM A TV TSVTGV++I G
Sbjct: 19 MGDFGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG 75

The following BLAST results are available for this feature:
BLAST of MELO3C018923 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ99647.12.5e-17100.00hypothetical protein E5676_scaffold562G00240 [Cucumis melo var. makuwa][more]
KAA0054811.15.5e-1798.28hypothetical protein E6C27_scaffold437G00990 [Cucumis melo var. makuwa][more]
TYK09492.12.5e-0977.19hypothetical protein E5676_scaffold499G00920 [Cucumis melo var. makuwa][more]
KAA0068093.12.3e-0786.67LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa] >TYK26... [more]
KGN65426.16.7e-0766.67hypothetical protein Csa_019847 [Cucumis sativus][more]
BLAST of MELO3C018923 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C018923 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BKI71.2e-17100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UMM62.7e-1798.28Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CE011.2e-0977.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DRF61.1e-0786.67LPS-induced tumor necrosis factor alpha factor OS=Cucumis melo var. makuwa OX=11... [more]
A0A0A0LZP73.2e-0766.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420870 PE=4 SV=1[more]
BLAST of MELO3C018923 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018923.1MELO3C018923.1mRNA