MELO3C018886.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C018886.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionglycine-rich protein DC7.1-like
Locationchr01: 3717536 .. 3718200 (-)
RNA-Seq ExpressionMELO3C018886.jh1
SyntenyMELO3C018886.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATTACAAGTTAATTACTAGAAAGAAAAGAAACTTAAAAAATGAACCATTCCAACTCCAGGCATTTTCCTTTTGTGACGACTCTTGTTTTCTCTATCATAGTCGTTCTTGTCCTTTCCTCAAAAGTGGCAACAAGAGACCTTTTACATGACGGACATGGCAGCTCCGCGGACACCCCTGGCTGCGGAAATTACAATAGATGCGGTGGGTACGGTAGAGGTGGAGGTGGAGATGGTTGCTCACATGGTTGCTGTGGTTTCAATCGTGGTGGTCGATGCATCCAATGTTGCAACTATGCTAATGAAGTCACAAATGTAAAACCCTAAAATAATATATAGTTAGGATCAAGAGTTTGAAGAAGTGGAGTCGTTTGTTTGACTTAAGAAGTTTGAATGTCTTGTATCTAAACAAAAAACATCAAAATTTCACAATTTGTATACTTCTGATTTGAACCCACAATTACACAATTTTTCATACTAGGTATGATTTCGCACCTCTAGATAAAAATTCTAAAGACTTTTTTTAACTTCATCTCTATTCATGATCACTTTTCTCTCCTATTTCAAGTTGCGTTTCACTGAGCTAGAAATAGAGCTAATGTTATTGAATGTATTGATGCAGAATTAATATAATGTAATGGTGGACATTAGTTCCTATGGCCAAA

mRNA sequence

CAAATTACAAGTTAATTACTAGAAAGAAAAGAAACTTAAAAAATGAACCATTCCAACTCCAGGCATTTTCCTTTTGTGACGACTCTTGTTTTCTCTATCATAGTCGTTCTTGTCCTTTCCTCAAAAGTGGCAACAAGAGACCTTTTACATGACGGACATGGCAGCTCCGCGGACACCCCTGGCTGCGGAAATTACAATAGATGCGGTGGGTACGGTAGAGGTGGAGGTGGAGATGGTTGCTCACATGGTTGCTGTGGTTTCAATCGTGGTGGTCGATGCATCCAATGTTGCAACTATGCTAATGAAGTCACAAATGTAAAACCCTAAAATAATATATAGTTAGGATCAAGAGTTTGAAGAAGTGGAGTCGTTTGTTTGACTTAAGAAGTTTGAATGTCTTGTATCTAAACAAAAAACATCAAAATTTCACAATTTGTATACTTCTGATTTGAACCCACAATTACACAATTTTTCATACTAGGTATGATTTCGCACCTCTAGATAAAAATTCTAAAGACTTTTTTTAACTTCATCTCTATTCATGATCACTTTTCTCTCCTATTTCAAGTTGCGTTTCACTGAGCTAGAAATAGAGCTAATGTTATTGAATGTATTGATGCAGAATTAATATAATGTAATGGTGGACATTAGTTCCTATGGCCAAA

Coding sequence (CDS)

ATGAACCATTCCAACTCCAGGCATTTTCCTTTTGTGACGACTCTTGTTTTCTCTATCATAGTCGTTCTTGTCCTTTCCTCAAAAGTGGCAACAAGAGACCTTTTACATGACGGACATGGCAGCTCCGCGGACACCCCTGGCTGCGGAAATTACAATAGATGCGGTGGGTACGGTAGAGGTGGAGGTGGAGATGGTTGCTCACATGGTTGCTGTGGTTTCAATCGTGGTGGTCGATGCATCCAATGTTGCAACTATGCTAATGAAGTCACAAATGTAAAACCCTAA

Protein sequence

MNHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLHDGHGSSADTPGCGNYNRCGGYGRGGGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVKP
Homology
BLAST of MELO3C018886.jh1 vs. NCBI nr
Match: KAA0059145.1 (hypothetical protein E6C27_scaffold430G00610 [Cucumis melo var. makuwa] >TYK02545.1 hypothetical protein E5676_scaffold201G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (505), Expect = 2.66e-64
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MNHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLHDGHGSSADTPGCGNYNRCGGYGRG 60
          MNHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLHDGHGSSADTPGCGNYNRCGGYGRG
Sbjct: 1  MNHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLHDGHGSSADTPGCGNYNRCGGYGRG 60

Query: 61 GGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVKP 94
          GGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVKP
Sbjct: 61 GGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVKP 94

BLAST of MELO3C018886.jh1 vs. NCBI nr
Match: KAE8645724.1 (hypothetical protein Csa_020254, partial [Cucumis sativus])

HSP 1 Score: 138 bits (348), Expect = 1.28e-40
Identity = 65/73 (89.04%), Postives = 66/73 (90.41%), Query Frame = 0

Query: 22 VLVLSSKVATRDLLHDGHGSSADTPGCGNYNRCGGYGRGGGGDGCSHGCCGFNRGGRCIQ 81
          VLVLS KVA RDLL DG GSSADTPGCGNY RCGGYGRGGGG+GCSHGCCGFNR GRCIQ
Sbjct: 1  VLVLSPKVAARDLLSDGRGSSADTPGCGNYYRCGGYGRGGGGNGCSHGCCGFNRDGRCIQ 60

Query: 82 CCNYANEVTNVKP 94
          CCNYANEVTNV P
Sbjct: 61 CCNYANEVTNVNP 73

BLAST of MELO3C018886.jh1 vs. NCBI nr
Match: XP_023530312.1 (glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.7 bits (156), Expect = 4.23e-11
Identity = 40/79 (50.63%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 20 IVVLVLSSKVATRDLLH-------DGHGSSAD-TPGCGNY-NRCGGYGRGGGGDGCSHGC 79
          IVV+ +SS+VA RDLL        +G GS  D  PGCGNY + C G+G  GG   C HGC
Sbjct: 18 IVVVDISSEVAARDLLQTKYSRGDNGSGSGVDDNPGCGNYIDSCRGHGPVGG---CQHGC 77

Query: 80 CGFNRGGRCIQCCNYANEV 89
          CG   GGRC +CC+  +EV
Sbjct: 78 CGTKNGGRCSKCCSNVSEV 93

BLAST of MELO3C018886.jh1 vs. NCBI nr
Match: XP_022930692.1 (glycine-rich protein DC7.1-like [Cucurbita moschata])

HSP 1 Score: 64.3 bits (155), Expect = 5.99e-11
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 20 IVVLVLSSKVATRDLLHD-----GHGSSA---DTPGCGNY-NRCGGYGRGGGGDGCSHGC 79
          ++V+ +SS+VA RDLL       G+GS +   D PGCGNY + C G+G  GG   C HGC
Sbjct: 18 VIVVDISSEVAARDLLQTKYSRGGNGSGSGVDDNPGCGNYIDSCRGHGPVGG---CQHGC 77

Query: 80 CGFNRGGRCIQCCNYANEV 89
          CG   GGRC +CC+  +EV
Sbjct: 78 CGTKNGGRCSKCCSNVSEV 93

BLAST of MELO3C018886.jh1 vs. NCBI nr
Match: KAG6589123.1 (hypothetical protein SDJN03_17688, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 8.48e-11
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 20 IVVLVLSSKVATRDLLH-------DGHGSSAD-TPGCGNY-NRCGGYGRGGGGDGCSHGC 79
          ++V+ +SS+VA RDLL        +G GS  D  PGCGNY + C G+G  GG   C HGC
Sbjct: 18 VIVVDISSQVAARDLLQTKYSRGDNGSGSGVDDNPGCGNYIDSCRGHGPVGG---CQHGC 77

Query: 80 CGFNRGGRCIQCCNYANEV 89
          CG   GGRC +CC+  +EV
Sbjct: 78 CGTKNGGRCSKCCSNVSEV 93

BLAST of MELO3C018886.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BTN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00260 PE=4 SV=1)

HSP 1 Score: 199 bits (505), Expect = 1.29e-64
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MNHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLHDGHGSSADTPGCGNYNRCGGYGRG 60
          MNHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLHDGHGSSADTPGCGNYNRCGGYGRG
Sbjct: 1  MNHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLHDGHGSSADTPGCGNYNRCGGYGRG 60

Query: 61 GGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVKP 94
          GGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVKP
Sbjct: 61 GGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVKP 94

BLAST of MELO3C018886.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K6K9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037550 PE=4 SV=1)

HSP 1 Score: 175 bits (443), Expect = 3.72e-55
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = 0

Query: 1  MNHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLHDGHGSSADTPGCGNYNRCGGYGRG 60
          MN+SNS+HFPFVTTLVFSI+VVLVLS KVA RDLL DG GSSADTPGCGNY RCGGYGRG
Sbjct: 1  MNYSNSKHFPFVTTLVFSIVVVLVLSPKVAARDLLSDGRGSSADTPGCGNYYRCGGYGRG 60

Query: 61 GGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVKP 94
          GGG+GCSHGCCGFNR GRCIQCCNYANEVTNV P
Sbjct: 61 GGGNGCSHGCCGFNRDGRCIQCCNYANEVTNVNP 94

BLAST of MELO3C018886.jh1 vs. ExPASy TrEMBL
Match: A0A6J1ERA6 (glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437089 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.90e-11
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 20 IVVLVLSSKVATRDLLHD-----GHGSSA---DTPGCGNY-NRCGGYGRGGGGDGCSHGC 79
          ++V+ +SS+VA RDLL       G+GS +   D PGCGNY + C G+G  GG   C HGC
Sbjct: 18 VIVVDISSEVAARDLLQTKYSRGGNGSGSGVDDNPGCGNYIDSCRGHGPVGG---CQHGC 77

Query: 80 CGFNRGGRCIQCCNYANEV 89
          CG   GGRC +CC+  +EV
Sbjct: 78 CGTKNGGRCSKCCSNVSEV 93

BLAST of MELO3C018886.jh1 vs. ExPASy TrEMBL
Match: A0A6J1JMN0 (glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486603 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.08e-10
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 0

Query: 20 IVVLVLSSKVATRDLLH-------DGHGSSADT-PGCGNY-NRCGGYGRGGGGDGCSHGC 79
          +VV+ +SS+VA RDLL        +G GS  D  PGCGNY + C G+G  GG   C HGC
Sbjct: 18 VVVVDISSEVAARDLLQTKYSRGDNGSGSGVDDIPGCGNYFDSCRGHGPDGG---CQHGC 77

Query: 80 CGFNRGGRCIQCCNYANE 88
          CG   GGRC +CC+  +E
Sbjct: 78 CGTKNGGRCSKCCSNVSE 92

BLAST of MELO3C018886.jh1 vs. ExPASy TrEMBL
Match: R0I5N7 (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10014882mg PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.05e-06
Identity = 28/58 (48.28%), Postives = 33/58 (56.90%), Query Frame = 0

Query: 39  HGSSADTPGCGNYNRCGGYGRGGGGDGCSHGCC--GFNRGGRCIQCCNYANEVTNVKP 94
           +G      G G YNR GGY RGGGG  C HGCC  G+N    C +CC+YA E    +P
Sbjct: 63  NGGGGYNNGGGGYNRGGGYNRGGGGGYCGHGCCFRGYNG---CRRCCSYAGEAVQTQP 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059145.12.66e-64100.00hypothetical protein E6C27_scaffold430G00610 [Cucumis melo var. makuwa] >TYK0254... [more]
KAE8645724.11.28e-4089.04hypothetical protein Csa_020254, partial [Cucumis sativus][more]
XP_023530312.14.23e-1150.63glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo][more]
XP_022930692.15.99e-1148.10glycine-rich protein DC7.1-like [Cucurbita moschata][more]
KAG6589123.18.48e-1148.10hypothetical protein SDJN03_17688, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BTN81.29e-64100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K6K93.72e-5588.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037550 PE=4 SV=1[more]
A0A6J1ERA62.90e-1148.10glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437089 PE... [more]
A0A6J1JMN01.08e-1048.72glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486603 PE=4... [more]
R0I5N72.05e-0648.28Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10014882mg PE=4 S... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018886.jh1.t1MELO3C018886.jh1.t1mRNA