MELO3C018875 (gene) Melon (DHL92) v4

Overview


Name	MELO3C018875
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Transcription initiation factor TFIID subunit 6-like
Location	chr01: 3538054 .. 3540185 (+)
RNA-Seq Expression	MELO3C018875
Synteny	MELO3C018875

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTCATCTTCTTATACTACCAAATCTTGAGCCATATCTGGGACTTCTGGAACCTGAGATGCTTCTTGCTAGTCAAAAGAATGAGATGAAGAGGCATGAAGCGTGGCGTGTTTATGGAGCCTTGCTAGTGAGTTATTTTGTTAGGATCTGGTTTAACATTCTTAGTTTCTTACCTGAATATTCTGTAGGAACTGATGTAATCTTTTAACGATACAAAATGGCTTACAGCGAGCCGTCGGTCAGTGCATATATGAACGCGTCAAGATTTTTCCTCCTTTGCCTAGTACGCCTGCAGGTTCTGTTTTGCGAACAAATGCAAGGATTATCACCACCACTTTCCCAAGTAAGCTCTTGAAACTTTCTTTGAATCAAACAACTGAGATACAAAATACTATCAACTTTAGTTTACTTTTCTCTAAGCTGGAAATTTTTATTCCTTGAATGACGTAGATTTTCAGCACCTACTTCTCTATTGAATTTTTGTTTCTGAGTTTTATGCAATGAATGGTACTACATACAGAAACGTCCCCATTAGTATACCTTGAATTATATGAATAGCGAGCCTGCTGAACTAAGAAGTAATTATTTGATGTGTCCTAATTGTTGCATGCTGATATATTCTCTTGTTTAAGTGACCAAATCCTTCAAATCCTACAACTTTTGGAATCTTCTAGTTCTTGATGCAAGTTGTATACTGCTTGAAGTTGACATGCTAAAATTCATTTTTTTTATTCTGCACGCATAATATTAGACAAACGCAAGGCAAATGCAGACTACTTAGAAGGGCAGCCTCCTCTCAAGAGGATGTTAATTGATGGTCCAATGGGGGTCATGTTAACTAATTCATCGGCATCACACATGGAAGGAACAGTTGTTCCGGCTGCCTCTGGCAATTCCAATGTGGTTTCGCCTACATCTTCAGGACAGATGCAAAATGAAACTATATCATCAGGCAGCACTAGTAGAAAGGGGAAGCATGATGATCAAATTCTTAAAAGATCAGCTGTTCTATCTCAAGTCTGGAAGGAGGATCTTAATTCTGGAAAGTTGTTAACATCTATGTTAGATTTGTTTGGTGAAAGTATGTTCTGCTTCATTCCTGCTCCTGAATTGTCTCTGTTCTTATAATAACCATCATCCATCTTCAAGTAGAAAACACTGTTCATGTTGCTGTGGAATTACGTGTAAGTTAATGGCTACTAATCTTTTGAATCTAGAGGAAATTTTTTTGACAAAAAGAAAAATAATATTTCTTATTTCAGTTAACAAAAACCTCACTCTTTCGAATTGTTTCTTGAATTTACTAATACAGAGAGTTAAAGGTAACTTTACTCAAGCAGCCATTATTGCAGTTTCACGCTCAACAGCCTTCATCAAGAAGCTGCCCTCTTCAAGCACCATCTGAACAGGCAAGAAGCCAATCCCATTAGCCATAGCTAGCATCATTCTTTTGATCTCAGTCTTATACGCATCCAGATCAACCATTCCATCTGAGTCACGATCAAATTGCAAAAACAGAGAACTATAGACAGACGAAAGCTCATCTGGATCAAGCTTCTTATCGTTCCCAAAATCGGCTTCGAACACCCTAAGACTCTGTAACTCCTCCAGCATCTCATTATAGGAAAGGAGACCATCATGGTTAGTGTCAAGGTGAGTGAATCGATCTCTTATATAGGCATTAAAAGCTGCCTCATCTTCAACAAAGTTGACAATTGTGGTACTGTCCAATATTTCCACACTCATTTTACCTAGTCCTGATATTTAGCTGAATTAAAAGAGGAAATTGGAAGGTATAGGAAAAGATTTGGAGTTGGGTTTTTGACGAGCAGAAGGTTGGCTCAGGTTTCGTCATATAAATAGGTCTCAGGAGGGTTTAGTTCTCTTTTAGCCTTTTGTTTATGCCACTGTTGAAGATTCTTGGGGCCTATCTTCATTTGATTTAATGGATGTGAGAAAGGATGTTCAAATGGAATTTTGTACAAACACATTAATGAATCAAAGTCAACAAGAGGAGAAGTCGGTGAAGTAGAGCTTTAAGCATCCAGTTGGTCGGTTAAACATGACAATTTTATTGCATGTTTGAGAATAATTTTAACCATATTTTATTGCATGTTTGAGAATAATTTTAA

mRNA sequence

GGTTCATCTTCTTATACTACCAAATCTTGAGCCATATCTGGGACTTCTGGAACCTGAGATGCTTCTTGCTAGTCAAAAGAATGAGATGAAGAGGCATGAAGCGTGGCGTGTTTATGGAGCCTTGCTACGAGCCGTCGGTCAGTGCATATATGAACGCGTCAAGATTTTTCCTCCTTTGCCTAGTACGCCTGCAGGTTCTGTTTTGCGAACAAATGCAAGGATTATCACCACCACTTTCCCAAACAAACGCAAGGCAAATGCAGACTACTTAGAAGGGCAGCCTCCTCTCAAGAGGATGTTAATTGATGGTCCAATGGGGGTCATGTTAACTAATTCATCGGCATCACACATGGAAGGAACAGTTGTTCCGGCTGCCTCTGGCAATTCCAATGTGGTTTCGCCTACATCTTCAGGACAGATGCAAAATGAAACTATATCATCAGGCAGCACTAGTAGAAAGGGGAAGCATGATGATCAAATTCTTAAAAGATCAGCTGTTCTATCTCAAGTCTGGAAGGAGGATCTTAATTCTGGAAAGTTGTTAACATCTATGTTAGATTTGTTTGGTGAAAGTATGTTCTGCTTCATTCCTGCTCCTGAATTGTCTCTGTTCTTATAATAACCATCATCCATCTTCAAGTAGAAAACACTGTTCATGTTGCTGTGGAATTACGTAGAGTTAAAGGTAACTTTACTCAAGCAGCCATTATTGCAGTTTCACGCTCAACAGCCTTCATCAAGAAGCTGCCCTCTTCAAGCACCATCTGAACAGGCAAGAAGCCAATCCCATTAGCCATAGCTAGCATCATTCTTTTGATCTCAGTCTTATACGCATCCAGATCAACCATTCCATCTGAGTCACGATCAAATTGCAAAAACAGAGAACTATAGACAGACGAAAGCTCATCTGGATCAAGCTTCTTATCGTTCCCAAAATCGGCTTCGAACACCCTAAGACTCTGTAACTCCTCCAGCATCTCATTATAGGAAAGGAGACCATCATGGTTAGTGTCAAGGTGAGTGAATCGATCTCTTATATAGGCATTAAAAGCTGCCTCATCTTCAACAAAGTTGACAATTGTGGTACTGTCCAATATTTCCACACTCATTTTACCTAGTCCTGATATTTAGCTGAATTAAAAGAGGAAATTGGAAGGTATAGGAAAAGATTTGGAGTTGGGTTTTTGACGAGCAGAAGGTTGGCTCAGGTTTCGTCATATAAATAGGTCTCAGGAGGGTTTAGTTCTCTTTTAGCCTTTTGTTTATGCCACTGTTGAAGATTCTTGGGGCCTATCTTCATTTGATTTAATGGATGTGAGAAAGGATGTTCAAATGGAATTTTGTACAAACACATTAATGAATCAAAGTCAACAAGAGGAGAAGTCGGTGAAGTAGAGCTTTAAGCATCCAGTTGGTCGGTTAAACATGACAATTTTATTGCATGTTTGAGAATAATTTTAACCATATTTTATTGCATGTTTGAGAATAATTTTAA

Coding sequence (CDS)

ATGCTTCTTGCTAGTCAAAAGAATGAGATGAAGAGGCATGAAGCGTGGCGTGTTTATGGAGCCTTGCTACGAGCCGTCGGTCAGTGCATATATGAACGCGTCAAGATTTTTCCTCCTTTGCCTAGTACGCCTGCAGGTTCTGTTTTGCGAACAAATGCAAGGATTATCACCACCACTTTCCCAAACAAACGCAAGGCAAATGCAGACTACTTAGAAGGGCAGCCTCCTCTCAAGAGGATGTTAATTGATGGTCCAATGGGGGTCATGTTAACTAATTCATCGGCATCACACATGGAAGGAACAGTTGTTCCGGCTGCCTCTGGCAATTCCAATGTGGTTTCGCCTACATCTTCAGGACAGATGCAAAATGAAACTATATCATCAGGCAGCACTAGTAGAAAGGGGAAGCATGATGATCAAATTCTTAAAAGATCAGCTGTTCTATCTCAAGTCTGGAAGGAGGATCTTAATTCTGGAAAGTTGTTAACATCTATGTTAGATTTGTTTGGTGAAAGTATGTTCTGCTTCATTCCTGCTCCTGAATTGTCTCTGTTCTTATAA

Protein sequence

MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAPELSLFL

Homology

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BLAST of MELO3C018875 vs. NCBI nr
Match: XP_008455502.1 (PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >XP_016901765.1 PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >XP_016901766.1 PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >KAA0059113.1 transcription initiation factor TFIID subunit 6-like [Cucumis melo var. makuwa] >TYK21618.1 transcription initiation factor TFIID subunit 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 364.4 bits (934), Expect = 5.9e-97
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 60
           MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF
Sbjct: 359 MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 418

Query: 61  PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 120
           PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ
Sbjct: 419 PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 478

Query: 121 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 180
           MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP
Sbjct: 479 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 538

Query: 181 ELSLFL 187
           ELSLFL
Sbjct: 539 ELSLFL 544

[Close]

BLAST of MELO3C018875 vs. NCBI nr
Match: XP_031744913.1 (transcription initiation factor TFIID subunit 6 [Cucumis sativus] >KGN43460.1 hypothetical protein Csa_020238 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 3.3e-92
Identity = 177/186 (95.16%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 60
           MLLA+QKNEMKRHEAW VYGALLRAVGQCIYER+KIFPPL STPAGSVLRTNAR ITTTF
Sbjct: 359 MLLANQKNEMKRHEAWHVYGALLRAVGQCIYERIKIFPPLLSTPAGSVLRTNARTITTTF 418

Query: 61  PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 120
           PNKRKANADYLEGQPPLKRM IDGPMGVMLTNSSASHMEGTVVPAASGNSN+VSPTSSGQ
Sbjct: 419 PNKRKANADYLEGQPPLKRMSIDGPMGVMLTNSSASHMEGTVVPAASGNSNLVSPTSSGQ 478

Query: 121 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 180
           MQNE ISSGSTSRKGKHDDQILK+SAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP
Sbjct: 479 MQNEAISSGSTSRKGKHDDQILKKSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 538

Query: 181 ELSLFL 187
           ELSLFL
Sbjct: 539 ELSLFL 544

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BLAST of MELO3C018875 vs. NCBI nr
Match: XP_038887949.1 (transcription initiation factor TFIID subunit 6-like isoform X1 [Benincasa hispida])

HSP 1 Score: 318.5 bits (815), Expect = 3.7e-83
Identity = 163/186 (87.63%), Postives = 172/186 (92.47%), Query Frame = 0


Query: 1   MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 60
           M LA+QKNEMKR+EAWRVYGALLRAVGQCIYERVKIFPPLPS PA SVL+TNAR+ITT F
Sbjct: 359 MFLANQKNEMKRYEAWRVYGALLRAVGQCIYERVKIFPPLPSMPASSVLQTNARVITTAF 418

Query: 61  PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 120
           PNKRKANADYLEGQPPLK+M+ DGPMGV+LT SSA HMEGTVVPAAS NSN+VS TS  Q
Sbjct: 419 PNKRKANADYLEGQPPLKKMVTDGPMGVILTKSSALHMEGTVVPAASSNSNLVSSTSFRQ 478

Query: 121 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 180
           MQNE I SG TSRKGKHDDQILKRSA+LSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP
Sbjct: 479 MQNE-IMSGGTSRKGKHDDQILKRSAILSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 538

Query: 181 ELSLFL 187
           ELSLFL
Sbjct: 539 ELSLFL 543

[Close]

BLAST of MELO3C018875 vs. NCBI nr
Match: XP_038887950.1 (transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispida] >XP_038887951.1 transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispida])

HSP 1 Score: 318.5 bits (815), Expect = 3.7e-83
Identity = 163/186 (87.63%), Postives = 172/186 (92.47%), Query Frame = 0


Query: 1   MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 60
           M LA+QKNEMKR+EAWRVYGALLRAVGQCIYERVKIFPPLPS PA SVL+TNAR+ITT F
Sbjct: 312 MFLANQKNEMKRYEAWRVYGALLRAVGQCIYERVKIFPPLPSMPASSVLQTNARVITTAF 371

Query: 61  PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 120
           PNKRKANADYLEGQPPLK+M+ DGPMGV+LT SSA HMEGTVVPAAS NSN+VS TS  Q
Sbjct: 372 PNKRKANADYLEGQPPLKKMVTDGPMGVILTKSSALHMEGTVVPAASSNSNLVSSTSFRQ 431

Query: 121 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 180
           MQNE I SG TSRKGKHDDQILKRSA+LSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP
Sbjct: 432 MQNE-IMSGGTSRKGKHDDQILKRSAILSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 491

Query: 181 ELSLFL 187
           ELSLFL
Sbjct: 492 ELSLFL 496

[Close]

BLAST of MELO3C018875 vs. NCBI nr
Match: XP_023529663.1 (transcription initiation factor TFIID subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 314.3 bits (804), Expect = 7.0e-82
Identity = 162/186 (87.10%), Postives = 175/186 (94.09%), Query Frame = 0


Query: 1   MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 60
           MLLASQKNEMKRHEAWRVYGALLRAVGQ IY+RVKIFPPLPST AGSVLRTNA++ITT F
Sbjct: 359 MLLASQKNEMKRHEAWRVYGALLRAVGQYIYDRVKIFPPLPSTLAGSVLRTNAKVITTAF 418

Query: 61  PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 120
            NKRK+NAD+LEGQPPLK+M+IDGPMGV  TNSSAS+MEGTV+PAASGNSN++SPTSS  
Sbjct: 419 SNKRKSNADHLEGQPPLKKMVIDGPMGVTPTNSSASYMEGTVIPAASGNSNLISPTSSRP 478

Query: 121 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 180
           MQ+ETI SGSTS KGK DDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIP+P
Sbjct: 479 MQDETI-SGSTSSKGKRDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPSP 538

Query: 181 ELSLFL 187
           ELSLFL
Sbjct: 539 ELSLFL 543

[Close]

BLAST of MELO3C018875 vs. ExPASy Swiss-Prot
Match: Q9MAU3 (Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana OX=3702 GN=TAF6 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-29
Identity = 85/191 (44.50%), Postives = 120/191 (62.83%), Query Frame = 0


Query: 6   QKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVL---RTNARIITTTFPN 65
           QKN+MK +EAWRVYGALLRA G CI+ R+KIFPPLPS P+ S L   +   +II+T  P+
Sbjct: 364 QKNQMKIYEAWRVYGALLRAAGLCIHGRLKIFPPLPS-PSPSFLHKGKGKGKIISTD-PH 423

Query: 66  KRKANADYLEGQPPLKRML-IDGPMGVMLTNSSASHMEGTVVPAASGN--SNVVSPTSSG 125
           KRK + D  E Q P KR++ +DGP GV   + S S       P  + N   N V P+SS 
Sbjct: 424 KRKLSVDSSENQSPQKRLITMDGPDGVHSQDQSGSAPMQVDNPVENDNPPQNSVQPSSSE 483

Query: 126 QMQNETISSGSTSRKGKHDD----QILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFC 185
           Q  +   ++ S SR GK  +    + +   A+L Q+WK+DL+SG+LL  + +L+G+ +  
Sbjct: 484 QASD---ANESESRNGKVKESGRSRAITMKAILDQIWKDDLDSGRLLVKLHELYGDRILP 543

Query: 186 FIPAPELSLFL 187
           FIP+ E+S+FL
Sbjct: 544 FIPSTEMSVFL 549

[Close]

BLAST of MELO3C018875 vs. ExPASy Swiss-Prot
Match: F4HVA6 (Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana OX=3702 GN=TAF6B PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.4e-16
Identity = 63/186 (33.87%), Postives = 91/186 (48.92%), Query Frame = 0


Query: 1   MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 60
           M L  QK E KRH AW VYGAL+ A G+C+YER+K    L S P  SV +TN + +T+  
Sbjct: 369 MGLEKQKEEAKRHGAWLVYGALMVAAGRCLYERLKTSETLLSPPTSSVWKTNGK-LTSPR 428

Query: 61  PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 120
            +KRKA++D L  QPPLK++ +    G++  +S+   M GT       +++     +   
Sbjct: 429 QSKRKASSDNLTHQPPLKKIAVG---GIIQMSSTQMQMRGTTTVPQQSHTDA---DARHH 488

Query: 121 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 180
               TI+  +++  G   D                      L  + + FGESM  F P  
Sbjct: 489 NSPSTIAPKTSAAAGTDVD--------------------NYLFPLFEYFGESMLMFTPTH 527

Query: 181 ELSLFL 187
           ELS FL
Sbjct: 549 ELSFFL 527

[Close]

BLAST of MELO3C018875 vs. ExPASy TrEMBL
Match: A0A1S3C124 (transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=LOC103495654 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.9e-97
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 60
           MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF
Sbjct: 359 MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 418

Query: 61  PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 120
           PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ
Sbjct: 419 PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 478

Query: 121 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 180
           MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP
Sbjct: 479 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 538

Query: 181 ELSLFL 187
           ELSLFL
Sbjct: 539 ELSLFL 544

[Close]

BLAST of MELO3C018875 vs. ExPASy TrEMBL
Match: A0A5A7UT52 (Transcription initiation factor TFIID subunit 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00160 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.9e-97
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 60
           MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF
Sbjct: 359 MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 418

Query: 61  PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 120
           PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ
Sbjct: 419 PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 478

Query: 121 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 180
           MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP
Sbjct: 479 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 538

Query: 181 ELSLFL 187
           ELSLFL
Sbjct: 539 ELSLFL 544

[Close]

BLAST of MELO3C018875 vs. ExPASy TrEMBL
Match: A0A0A0K1B8 (TAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G037630 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.6e-92
Identity = 177/186 (95.16%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 60
           MLLA+QKNEMKRHEAW VYGALLRAVGQCIYER+KIFPPL STPAGSVLRTNAR ITTTF
Sbjct: 359 MLLANQKNEMKRHEAWHVYGALLRAVGQCIYERIKIFPPLLSTPAGSVLRTNARTITTTF 418

Query: 61  PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 120
           PNKRKANADYLEGQPPLKRM IDGPMGVMLTNSSASHMEGTVVPAASGNSN+VSPTSSGQ
Sbjct: 419 PNKRKANADYLEGQPPLKRMSIDGPMGVMLTNSSASHMEGTVVPAASGNSNLVSPTSSGQ 478

Query: 121 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 180
           MQNE ISSGSTSRKGKHDDQILK+SAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP
Sbjct: 479 MQNEAISSGSTSRKGKHDDQILKKSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 538

Query: 181 ELSLFL 187
           ELSLFL
Sbjct: 539 ELSLFL 544

[Close]

BLAST of MELO3C018875 vs. ExPASy TrEMBL
Match: A0A6J1ERJ6 (transcription initiation factor TFIID subunit 6-like OS=Cucurbita moschata OX=3662 GN=LOC111437057 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 8.3e-81
Identity = 159/186 (85.48%), Postives = 174/186 (93.55%), Query Frame = 0


Query: 1   MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 60
           MLLASQKNEMKRHEAWRVYGALLRAVGQ IY+RVKIFPPLPST AGSVL+TNA++ITTTF
Sbjct: 359 MLLASQKNEMKRHEAWRVYGALLRAVGQYIYDRVKIFPPLPSTLAGSVLQTNAKVITTTF 418

Query: 61  PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 120
            NKRK+NAD+LEGQPPLK+M+IDGPMGV  TNSSAS+MEGTV+PAASGNSN++SPTSS  
Sbjct: 419 SNKRKSNADHLEGQPPLKKMVIDGPMGVTPTNSSASYMEGTVIPAASGNSNLISPTSSRP 478

Query: 121 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 180
            Q+E + SGSTS KGK DDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIP+P
Sbjct: 479 TQDEMV-SGSTSSKGKRDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPSP 538

Query: 181 ELSLFL 187
           ELSLFL
Sbjct: 539 ELSLFL 543

[Close]

BLAST of MELO3C018875 vs. ExPASy TrEMBL
Match: A0A6J1JDV8 (transcription initiation factor TFIID subunit 6-like OS=Cucurbita maxima OX=3661 GN=LOC111485983 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.4e-80
Identity = 160/186 (86.02%), Postives = 172/186 (92.47%), Query Frame = 0


Query: 1   MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 60
           MLLASQKNEMKRHE WRVYGALLRAVGQ IY+RVKIFPPLPST AGSVLRTNA++ITTTF
Sbjct: 359 MLLASQKNEMKRHEVWRVYGALLRAVGQYIYDRVKIFPPLPSTLAGSVLRTNAKVITTTF 418

Query: 61  PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 120
            NKRK+NAD LEGQPPLK+M+IDGPMGV  TNSSAS+MEGTV+PAASGNSN++SPTSS  
Sbjct: 419 SNKRKSNADQLEGQPPLKKMVIDGPMGVTPTNSSASYMEGTVIPAASGNSNLISPTSSRP 478

Query: 121 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 180
            Q+E I SGSTS KGK DDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIP+P
Sbjct: 479 TQDEMI-SGSTSSKGKRDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPSP 538

Query: 181 ELSLFL 187
           ELSLFL
Sbjct: 539 ELSLFL 543

[Close]

BLAST of MELO3C018875 vs. TAIR 10
Match: AT1G04950.1 (TATA BOX ASSOCIATED FACTOR II 59 )

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-30
Identity = 85/191 (44.50%), Postives = 120/191 (62.83%), Query Frame = 0


Query: 6   QKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVL---RTNARIITTTFPN 65
           QKN+MK +EAWRVYGALLRA G CI+ R+KIFPPLPS P+ S L   +   +II+T  P+
Sbjct: 364 QKNQMKIYEAWRVYGALLRAAGLCIHGRLKIFPPLPS-PSPSFLHKGKGKGKIISTD-PH 423

Query: 66  KRKANADYLEGQPPLKRML-IDGPMGVMLTNSSASHMEGTVVPAASGN--SNVVSPTSSG 125
           KRK + D  E Q P KR++ +DGP GV   + S S       P  + N   N V P+SS 
Sbjct: 424 KRKLSVDSSENQSPQKRLITMDGPDGVHSQDQSGSAPMQVDNPVENDNPPQNSVQPSSSE 483

Query: 126 QMQNETISSGSTSRKGKHDD----QILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFC 185
           Q  +   ++ S SR GK  +    + +   A+L Q+WK+DL+SG+LL  + +L+G+ +  
Sbjct: 484 QASD---ANESESRNGKVKESGRSRAITMKAILDQIWKDDLDSGRLLVKLHELYGDRILP 543

Query: 186 FIPAPELSLFL 187
           FIP+ E+S+FL
Sbjct: 544 FIPSTEMSVFL 549

[Close]

BLAST of MELO3C018875 vs. TAIR 10
Match: AT1G04950.2 (TATA BOX ASSOCIATED FACTOR II 59 )

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-30
Identity = 85/191 (44.50%), Postives = 120/191 (62.83%), Query Frame = 0


Query: 6   QKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVL---RTNARIITTTFPN 65
           QKN+MK +EAWRVYGALLRA G CI+ R+KIFPPLPS P+ S L   +   +II+T  P+
Sbjct: 364 QKNQMKIYEAWRVYGALLRAAGLCIHGRLKIFPPLPS-PSPSFLHKGKGKGKIISTD-PH 423

Query: 66  KRKANADYLEGQPPLKRML-IDGPMGVMLTNSSASHMEGTVVPAASGN--SNVVSPTSSG 125
           KRK + D  E Q P KR++ +DGP GV   + S S       P  + N   N V P+SS 
Sbjct: 424 KRKLSVDSSENQSPQKRLITMDGPDGVHSQDQSGSAPMQVDNPVENDNPPQNSVQPSSSE 483

Query: 126 QMQNETISSGSTSRKGKHDD----QILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFC 185
           Q  +   ++ S SR GK  +    + +   A+L Q+WK+DL+SG+LL  + +L+G+ +  
Sbjct: 484 QASD---ANESESRNGKVKESGRSRAITMKAILDQIWKDDLDSGRLLVKLHELYGDRILP 543

Query: 186 FIPAPELSLFL 187
           FIP+ E+S+FL
Sbjct: 544 FIPSTEMSVFL 549

[Close]

BLAST of MELO3C018875 vs. TAIR 10
Match: AT1G04950.3 (TATA BOX ASSOCIATED FACTOR II 59 )

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-30
Identity = 85/191 (44.50%), Postives = 120/191 (62.83%), Query Frame = 0


Query: 6   QKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVL---RTNARIITTTFPN 65
           QKN+MK +EAWRVYGALLRA G CI+ R+KIFPPLPS P+ S L   +   +II+T  P+
Sbjct: 364 QKNQMKIYEAWRVYGALLRAAGLCIHGRLKIFPPLPS-PSPSFLHKGKGKGKIISTD-PH 423

Query: 66  KRKANADYLEGQPPLKRML-IDGPMGVMLTNSSASHMEGTVVPAASGN--SNVVSPTSSG 125
           KRK + D  E Q P KR++ +DGP GV   + S S       P  + N   N V P+SS 
Sbjct: 424 KRKLSVDSSENQSPQKRLITMDGPDGVHSQDQSGSAPMQVDNPVENDNPPQNSVQPSSSE 483

Query: 126 QMQNETISSGSTSRKGKHDD----QILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFC 185
           Q  +   ++ S SR GK  +    + +   A+L Q+WK+DL+SG+LL  + +L+G+ +  
Sbjct: 484 QASD---ANESESRNGKVKESGRSRAITMKAILDQIWKDDLDSGRLLVKLHELYGDRILP 543

Query: 186 FIPAPELSLFL 187
           FIP+ E+S+FL
Sbjct: 544 FIPSTEMSVFL 549

[Close]

BLAST of MELO3C018875 vs. TAIR 10
Match: AT1G54360.1 (TBP-ASSOCIATED FACTOR 6B )

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-17
Identity = 63/186 (33.87%), Postives = 91/186 (48.92%), Query Frame = 0


Query: 1   MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 60
           M L  QK E KRH AW VYGAL+ A G+C+YER+K    L S P  SV +TN + +T+  
Sbjct: 346 MGLEKQKEEAKRHGAWLVYGALMVAAGRCLYERLKTSETLLSPPTSSVWKTNGK-LTSPR 405

Query: 61  PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 120
            +KRKA++D L  QPPLK++ +    G++  +S+   M GT       +++     +   
Sbjct: 406 QSKRKASSDNLTHQPPLKKIAVG---GIIQMSSTQMQMRGTTTVPQQSHTDA---DARHH 465

Query: 121 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 180
               TI+  +++  G   D                      L  + + FGESM  F P  
Sbjct: 466 NSPSTIAPKTSAAAGTDVD--------------------NYLFPLFEYFGESMLMFTPTH 504

Query: 181 ELSLFL 187
           ELS FL
Sbjct: 526 ELSFFL 504

[Close]

BLAST of MELO3C018875 vs. TAIR 10
Match: AT1G54360.2 (TBP-ASSOCIATED FACTOR 6B )

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-17
Identity = 63/186 (33.87%), Postives = 91/186 (48.92%), Query Frame = 0


Query: 1   MLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTF 60
           M L  QK E KRH AW VYGAL+ A G+C+YER+K    L S P  SV +TN + +T+  
Sbjct: 369 MGLEKQKEEAKRHGAWLVYGALMVAAGRCLYERLKTSETLLSPPTSSVWKTNGK-LTSPR 428

Query: 61  PNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQ 120
            +KRKA++D L  QPPLK++ +    G++  +S+   M GT       +++     +   
Sbjct: 429 QSKRKASSDNLTHQPPLKKIAVG---GIIQMSSTQMQMRGTTTVPQQSHTDA---DARHH 488

Query: 121 MQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAP 180
               TI+  +++  G   D                      L  + + FGESM  F P  
Sbjct: 489 NSPSTIAPKTSAAAGTDVD--------------------NYLFPLFEYFGESMLMFTPTH 527

Query: 181 ELSLFL 187
           ELS FL
Sbjct: 549 ELSFFL 527

The following BLAST results are available for this feature:

BLAST of MELO3C018875 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455502.1	5.9e-97	100.00	PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >...	[more]
XP_031744913.1	3.3e-92	95.16	transcription initiation factor TFIID subunit 6 [Cucumis sativus] >KGN43460.1 hy...	[more]
XP_038887949.1	3.7e-83	87.63	transcription initiation factor TFIID subunit 6-like isoform X1 [Benincasa hispi...	[more]
XP_038887950.1	3.7e-83	87.63	transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispi...	[more]
XP_023529663.1	7.0e-82	87.10	transcription initiation factor TFIID subunit 6 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C018875 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MAU3	1.9e-29	44.50	Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana OX=3702 ...	[more]
F4HVA6	2.4e-16	33.87	Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of MELO3C018875 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C124	2.9e-97	100.00	transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7UT52	2.9e-97	100.00	Transcription initiation factor TFIID subunit 6-like OS=Cucumis melo var. makuwa...	[more]
A0A0A0K1B8	1.6e-92	95.16	TAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G037630 PE=3 SV...	[more]
A0A6J1ERJ6	8.3e-81	85.48	transcription initiation factor TFIID subunit 6-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1JDV8	1.4e-80	86.02	transcription initiation factor TFIID subunit 6-like OS=Cucurbita maxima OX=3661...	[more]

BLAST of MELO3C018875 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04950.1	1.3e-30	44.50	TATA BOX ASSOCIATED FACTOR II 59	[more]
AT1G04950.2	1.3e-30	44.50	TATA BOX ASSOCIATED FACTOR II 59	[more]
AT1G04950.3	1.3e-30	44.50	TATA BOX ASSOCIATED FACTOR II 59	[more]
AT1G54360.1	1.7e-17	33.87	TBP-ASSOCIATED FACTOR 6B	[more]
AT1G54360.2	1.7e-17	33.87	TBP-ASSOCIATED FACTOR 6B	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..130
None	No IPR available	PANTHER	PTHR10221:SF13	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	coord: 1..186
IPR037796	Transcription initiation factor TFIID subunit 6	PANTHER	PTHR10221	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	coord: 1..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018875.1	MELO3C018875.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0046695	SLIK (SAGA-like) complex
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity