MELO3C018738.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C018738.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Location	chr01: 2533689 .. 2534353 (+)
RNA-Seq Expression	MELO3C018738.jh1
Synteny	MELO3C018738.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTTTCCAACCAAAACACACACACACAAAGGAAAAAAGAAAAAGAAAGAAAGAAGGCCACACCCACCACATTTTCCATGAAGAAAACAGGGCTCTTCGCTGCCTCCGTCGCCGCTGCCTCCGCCACCGCCCTCTCTGCTCCCCCGTCCTCCCCCAGCACCCTCAAAACCAACTTCTCCCATCAGGTAATTCAAAAAAAAATTCACTCCAACTCTCATTAATTTCTCAAACAAACCCATTTTGCAAAACACAAGAAAAATTTTAAAAAAAATAAATAAAAAAAAATCAACAATTAATTCTTGGGTATTTCAGGAAAAAGTGATCGCCAGAGATGAGGAAATTACTACACCGACGAGAAGATCGCCGCCGTCTACGGCATCTGATCAATTTGCTCCGAGATTCGATGGGTTGAGATTCATTGAAACTCTTGTCACTGCTCATAGATGATAAGCTTTGGCAATAAAATGGCCTTCCATCCTTTTTCTTTTCTGTCTTATTATTAAAGAAAAAAGAAAAAAAAAATCAATTGCTTTGAGGAAAGAAACCCCCAATTCTGTATTGCAAGTGGTGGGTTTGTTTTTGTTTTTTCTTTTAGAGGTTGATCTTGTAATTCAAATCATATAATGTAATGTAAGAATTGATATAACATGACATGTATTTTACTA

mRNA sequence

CCTTTTCCAACCAAAACACACACACACAAAGGAAAAAAGAAAAAGAAAGAAAGAAGGCCACACCCACCACATTTTCCATGAAGAAAACAGGGCTCTTCGCTGCCTCCGTCGCCGCTGCCTCCGCCACCGCCCTCTCTGCTCCCCCGTCCTCCCCCAGCACCCTCAAAACCAACTTCTCCCATCAGGAAAAAGTGATCGCCAGAGATGAGGAAATTACTACACCGACGAGAAGATCGCCGCCGTCTACGGCATCTGATCAATTTGCTCCGAGATTCGATGGGTTGAGATTCATTGAAACTCTTGTCACTGCTCATAGATGATAAGCTTTGGCAATAAAATGGCCTTCCATCCTTTTTCTTTTCTGTCTTATTATTAAAGAAAAAAGAAAAAAAAAATCAATTGCTTTGAGGAAAGAAACCCCCAATTCTGTATTGCAAGTGGTGGGTTTGTTTTTGTTTTTTCTTTTAGAGGTTGATCTTGTAATTCAAATCATATAATGTAATGTAAGAATTGATATAACATGACATGTATTTTACTA

Coding sequence (CDS)

ATGAAGAAAACAGGGCTCTTCGCTGCCTCCGTCGCCGCTGCCTCCGCCACCGCCCTCTCTGCTCCCCCGTCCTCCCCCAGCACCCTCAAAACCAACTTCTCCCATCAGGAAAAAGTGATCGCCAGAGATGAGGAAATTACTACACCGACGAGAAGATCGCCGCCGTCTACGGCATCTGATCAATTTGCTCCGAGATTCGATGGGTTGAGATTCATTGAAACTCTTGTCACTGCTCATAGATGA

Protein sequence

MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASDQFAPRFDGLRFIETLVTAHR

Homology

[Close]

BLAST of MELO3C018738.jh1 vs. NCBI nr
Match: KAA0031576.1 (hypothetical protein E6C27_scaffold139G003430 [Cucumis melo var. makuwa] >TYK07028.1 hypothetical protein E5676_scaffold13G003450 [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (383), Expect = 4.03e-46
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60
          MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60

Query: 61 QFAPRFDGLRFIETLVTAHR 80
          QFAPRFDGLRFIETLVTAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of MELO3C018738.jh1 vs. NCBI nr
Match: KGN43613.1 (hypothetical protein Csa_020428 [Cucumis sativus])

HSP 1 Score: 130 bits (327), Expect = 1.37e-37
Identity = 71/80 (88.75%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60
          MKKTGLFAASVAAASATALSAPP+SP  LKTNFS QEKV  RDEE TTP RRSPPSTA+D
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVT-RDEESTTPARRSPPSTAAD 60

Query: 61 QFAPRFDGLRFIETLVTAHR 80
          QFAPRFDGLRFIETLVTAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of MELO3C018738.jh1 vs. NCBI nr
Match: XP_038888462.1 (uncharacterized protein LOC120078298 [Benincasa hispida])

HSP 1 Score: 127 bits (320), Expect = 1.60e-36
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60
          MKKTGLFAASVAAASATALSAPPSS   LKT FSHQE+V  RD+EITTP+RRSPPSTA++
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSAGILKTTFSHQEQVT-RDQEITTPSRRSPPSTAAE 60

Query: 61 QFAPRFDGLRFIETLVTAHR 80
          QFAPRFDGLRFIETLVTAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of MELO3C018738.jh1 vs. NCBI nr
Match: XP_023554654.1 (uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125 bits (313), Expect = 1.99e-35
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60
          MKKTGLFAASVAAASATALSAP SS   LKT FSHQEKVI+RDEE T+P+R SPPSTA+D
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSTGVLKTTFSHQEKVISRDEE-TSPSRISPPSTAAD 62

Query: 61 QFAPRFDGLRFIETLVTAHR 80
          QFAPRFDGLRFIETLVTAHR
Sbjct: 63 QFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of MELO3C018738.jh1 vs. NCBI nr
Match: XP_022952670.1 (uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothetical protein SDJN03_29089, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011972.1 hypothetical protein SDJN02_26880 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124 bits (311), Expect = 4.01e-35
Identity = 69/80 (86.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60
          MKKTGLFAASVAAASATALSAP SS   LKT FSHQEKVI+RDEE T+P+R SPPSTA D
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEE-TSPSRISPPSTAPD 62

Query: 61 QFAPRFDGLRFIETLVTAHR 80
          QFAPRFDGLRFIETLVTAHR
Sbjct: 63 QFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of MELO3C018738.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C7A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003450 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 1.95e-46
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60
          MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60

Query: 61 QFAPRFDGLRFIETLVTAHR 80
          QFAPRFDGLRFIETLVTAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of MELO3C018738.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K2C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 6.64e-38
Identity = 71/80 (88.75%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60
          MKKTGLFAASVAAASATALSAPP+SP  LKTNFS QEKV  RDEE TTP RRSPPSTA+D
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVT-RDEESTTPARRSPPSTAAD 60

Query: 61 QFAPRFDGLRFIETLVTAHR 80
          QFAPRFDGLRFIETLVTAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of MELO3C018738.jh1 vs. ExPASy TrEMBL
Match: A0A6J1GMF4 (uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC111455296 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 1.94e-35
Identity = 69/80 (86.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60
          MKKTGLFAASVAAASATALSAP SS   LKT FSHQEKVI+RDEE T+P+R SPPSTA D
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEE-TSPSRISPPSTAPD 62

Query: 61 QFAPRFDGLRFIETLVTAHR 80
          QFAPRFDGLRFIETLVTAHR
Sbjct: 63 QFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of MELO3C018738.jh1 vs. ExPASy TrEMBL
Match: A0A6J1I0M0 (uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357 PE=4 SV=1)

HSP 1 Score: 122 bits (307), Expect = 7.91e-35
Identity = 68/80 (85.00%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60
          MKKTGLFAASVAAASATALSAP SS   LKT FSHQEKVI RDEE ++P+R SPPSTA+D
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVIIRDEE-SSPSRISPPSTAAD 62

Query: 61 QFAPRFDGLRFIETLVTAHR 80
          QFAPRFDGLRFIETLVTAHR
Sbjct: 63 QFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of MELO3C018738.jh1 vs. ExPASy TrEMBL
Match: E0CTD2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.41e-16
Identity = 49/82 (59.76%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSP--STLKTNFSHQEKVIARDEEITTPTRRSPPSTA 60
          MKK+G FAASVAAASATA+SAP SS      K   S  E V  +D E +   R    S++
Sbjct: 1  MKKSGFFAASVAAASATAISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQR----SSS 60

Query: 61 SDQFAPRFDGLRFIETLVTAHR 80
          +D+FAPRFDGLRFIETLVTAHR
Sbjct: 61 ADRFAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of MELO3C018738.jh1 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-10
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1  MKKTGLFAASVA-AASATALSAPPSSPSTLKTNFSHQEKVIARDE--EITTPTRRSPPST 60
          MKKTG+ AAS++ AASATA+SA  ++ S    +FS  E  ++R E  E     + S    
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTS---VSFSSPESNLSRQEAKEKQRKKKGSSEDG 60

Query: 61 ASDQFAPRFDGLRFIETLVTAHR 81
            ++FAPRFDGLRFIETLVTAHR
Sbjct: 61 GDEKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of MELO3C018738.jh1 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 4.1e-05
Identity = 35/84 (41.67%), Postives = 39/84 (46.43%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSA----PPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPS 60
          MK +    ASV A S  ALS+    PP SP   +                      S  +
Sbjct: 1  MKVSSGVVASVIAVSTAALSSSSILPPVSPKVWE----------------------SRKT 60

Query: 61 TASDQFAPRFDGLRFIETLVTAHR 81
            SD F PRFDGLRFIETLVTAHR
Sbjct: 61 NGSDNFEPRFDGLRFIETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of MELO3C018738.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031576.1	4.03e-46	100.00	hypothetical protein E6C27_scaffold139G003430 [Cucumis melo var. makuwa] >TYK070...	[more]
KGN43613.1	1.37e-37	88.75	hypothetical protein Csa_020428 [Cucumis sativus]	[more]
XP_038888462.1	1.60e-36	86.25	uncharacterized protein LOC120078298 [Benincasa hispida]	[more]
XP_023554654.1	1.99e-35	86.25	uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo]	[more]
XP_022952670.1	4.01e-35	86.25	uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothet...	[more]

BLAST of MELO3C018738.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C018738.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7A0	1.95e-46	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K2C1	6.64e-38	88.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1	[more]
A0A6J1GMF4	1.94e-35	86.25	uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1I0M0	7.91e-35	85.00	uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357...	[more]
E0CTD2	1.41e-16	59.76	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=...	[more]

BLAST of MELO3C018738.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	1.5e-10	51.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	4.1e-05	41.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..63
None	No IPR available	PANTHER	PTHR34683:SF2	EXPRESSED PROTEIN	coord: 1..80
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018738.jh1.t1	MELO3C018738.jh1.t1	mRNA