MELO3C018581.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C018581.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Phloem filament protein
Location	chr01: 1286161 .. 1286925 (-)
RNA-Seq Expression	MELO3C018581.jh1
Synteny	MELO3C018581.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTAATTATTTACACACATAAAACTAGCTAAGGTCATCCAAATGAGTTCTTTGCCAAGTGGTTGTTCCAAAAAGTGGATTAAATTGCCTAGTGTTTTGATTCCTTGTTTGCAAGCCATTGCAGAGCATGGAGTAGAAGAGTTCAAGAAAAAATATGACGTGAGCCTGATATACAAGAATGTTGTTGAAGGTTGGTATCAGGAGTTGGATGATCATGGAAATACTATAAGGTACCGTCTTCATGTTCAAGCATACGACTGTCTTAGACGTCTACTCAAATTTGAAGCTATTTTGCTCCAACAACATGCTCAGAATAACGAAGAATCTACCATCACTCTTGAGTCTTTTGATCGGATAATTTCCTACCTCTAAGACAAAGTAACTATAATAATATATATCAAACTTTCCTTTCCCTTTTGGTCTTGTGTTCTTCCTCCTTCTGGTTTGTTTTGTACTGTCTTTTTGCTATCTATATATTTGTTATATTTGAATAATCATATGCAGTAATTGATGAGTCAATGGCACGAGTTTTTTGTATTAGGTTTGAAGCTTTTCAGGCAAGTTTTGTTTCTCTTTCTTCTAAAATCGCTCTAACACGTTTCTATTGTGGATCAAGTAAGGTGTCGTTTTGTGCAGACGACTTTTAGGGTTTCTTGGTTTGTTGAGTTTTGAGGGTGGTTGTAAGGATTGAGGACTTAGATTGTTTGGTTGTTGGTGTTAGATTAATAGTTTTAATTTATATATGAAGTGTTTTTCTTTCCAAA

mRNA sequence

TAATTAATTATTTACACACATAAAACTAGCTAAGGTCATCCAAATGAGTTCTTTGCCAAGTGGTTGTTCCAAAAAGTGGATTAAATTGCCTAGTGTTTTGATTCCTTGTTTGCAAGCCATTGCAGAGCATGGAGTAGAAGAGTTCAAGAAAAAATATGACGTGAGCCTGATATACAAGAATGTTGTTGAAGGTTGGTATCAGGAGTTGGATGATCATGGAAATACTATAAGGTACCGTCTTCATGTTCAAGCATACGACTGTCTTAGACGTCTACTCAAATTTGAAGCTATTTTGCTCCAACAACATGCTCAGAATAACGAAGAATCTACCATCACTCTTGAGTCTTTTGATCGGATAATTTCCTACCTCTAAGACAAAGTAACTATAATAATATATATCAAACTTTCCTTTCCCTTTTGGTCTTGTGTTCTTCCTCCTTCTGGTTTGTTTTGTACTGTCTTTTTGCTATCTATATATTTGTTATATTTGAATAATCATATGCAGTAATTGATGAGTCAATGGCACGAGTTTTTTGTATTAGGTTTGAAGCTTTTCAGGCAAGTTTTGTTTCTCTTTCTTCTAAAATCGCTCTAACACGTTTCTATTGTGGATCAAGTAAGGTGTCGTTTTGTGCAGACGACTTTTAGGGTTTCTTGGTTTGTTGAGTTTTGAGGGTGGTTGTAAGGATTGAGGACTTAGATTGTTTGGTTGTTGGTGTTAGATTAATAGTTTTAATTTATATATGAAGTGTTTTTCTTTCCAAA

Coding sequence (CDS)

ATGAGTTCTTTGCCAAGTGGTTGTTCCAAAAAGTGGATTAAATTGCCTAGTGTTTTGATTCCTTGTTTGCAAGCCATTGCAGAGCATGGAGTAGAAGAGTTCAAGAAAAAATATGACGTGAGCCTGATATACAAGAATGTTGTTGAAGGTTGGTATCAGGAGTTGGATGATCATGGAAATACTATAAGGTACCGTCTTCATGTTCAAGCATACGACTGTCTTAGACGTCTACTCAAATTTGAAGCTATTTTGCTCCAACAACATGCTCAGAATAACGAAGAATCTACCATCACTCTTGAGTCTTTTGATCGGATAATTTCCTACCTCTAA

Protein sequence

MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGNTIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL

Homology

[Close]

BLAST of MELO3C018581.jh1 vs. NCBI nr
Match: ADN34265.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031426.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 224 bits (572), Expect = 4.78e-74
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60
           MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN
Sbjct: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60

Query: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL 109
           TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL
Sbjct: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL 109

[Close]

BLAST of MELO3C018581.jh1 vs. NCBI nr
Match: TYK06877.1 (phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 210 bits (535), Expect = 1.86e-68
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60
           MSSL SGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELD HGN
Sbjct: 1   MSSLASGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDVHGN 60

Query: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105
           T+RYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI
Sbjct: 61  TVRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]

BLAST of MELO3C018581.jh1 vs. NCBI nr
Match: KAE8645824.1 (hypothetical protein Csa_017165 [Cucumis sativus])

HSP 1 Score: 120 bits (301), Expect = 4.68e-31
Identity = 54/62 (87.10%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60
          MSSLPS CSK+WIK P+VLIPCLQAIAEHG+EEFKKK++VSLIYKNVVEGWY+ELDDHGN
Sbjct: 1  MSSLPSICSKRWIKFPNVLIPCLQAIAEHGIEEFKKKHEVSLIYKNVVEGWYKELDDHGN 60

Query: 61 TI 62
          TI
Sbjct: 61 TI 62

[Close]

BLAST of MELO3C018581.jh1 vs. NCBI nr
Match: XP_038887119.1 (uncharacterized protein LOC120077304 [Benincasa hispida])

HSP 1 Score: 105 bits (263), Expect = 5.03e-27
Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 2   SSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGNT 61
           S+ P GCSKKWIK+  +  PC++  A+  +EEF  K++ SL YK V+EGW +ELD+  + 
Sbjct: 3   STFPCGCSKKWIKITDLETPCVEDNAKFAIEEFNIKHNGSLRYKKVIEGWCKELDE--SH 62

Query: 62  IRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDR 104
           IRYRL VQA DCLRRLL+FEAI+   +++N E + I LESF++
Sbjct: 63  IRYRLLVQANDCLRRLLEFEAIVFAHYSENGETTRI-LESFEQ 102

[Close]

BLAST of MELO3C018581.jh1 vs. NCBI nr
Match: KAG6588835.1 (hypothetical protein SDJN03_17400, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.6 bits (192), Expect = 2.53e-14
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 10  KKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGNTIRYRLHVQ 69
           +KWI++PSV  PC+Q +AE  V+EF +KY   L + +V EGWY EL    N+++YRLH++
Sbjct: 218 EKWIQIPSVKEPCVQVVAEFAVDEFNRKYGNILKFNSVYEGWYWELSP--NSLKYRLHIK 277

Query: 70  AYDCLRRLLKFEAILLQQHAQN 91
           A D L R L +E ++ +   Q+
Sbjct: 278 AIDFLERCLNYEFVVFEVKYQS 297

[Close]

BLAST of MELO3C018581.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SN25 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001820 PE=4 SV=1)

HSP 1 Score: 224 bits (572), Expect = 2.31e-74
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60
           MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN
Sbjct: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60

Query: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL 109
           TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL
Sbjct: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL 109

[Close]

BLAST of MELO3C018581.jh1 vs. ExPASy TrEMBL
Match: E5GCR7 (Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 224 bits (572), Expect = 2.31e-74
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60
           MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN
Sbjct: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60

Query: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL 109
           TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL
Sbjct: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL 109

[Close]

BLAST of MELO3C018581.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C4U6 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001810 PE=4 SV=1)

HSP 1 Score: 210 bits (535), Expect = 8.99e-69
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60
           MSSL SGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELD HGN
Sbjct: 1   MSSLASGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDVHGN 60

Query: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105
           T+RYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI
Sbjct: 61  TVRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]

BLAST of MELO3C018581.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K471 (Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G067340 PE=4 SV=1)

HSP 1 Score: 205 bits (522), Expect = 9.84e-67
Identity = 95/109 (87.16%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60
           MSSLPS CSK+WIK P+VLIPCLQAIAEHG+EEFKKK++VSLIYKNVVEGWY+ELDDHGN
Sbjct: 1   MSSLPSICSKRWIKFPNVLIPCLQAIAEHGIEEFKKKHEVSLIYKNVVEGWYKELDDHGN 60

Query: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRIISYL 109
           TIRYRLH+QAYDC+RRLLKFEA+LLQQHAQNNE+STITLESF++IISYL
Sbjct: 61  TIRYRLHIQAYDCIRRLLKFEAVLLQQHAQNNEKSTITLESFEQIISYL 109

[Close]

BLAST of MELO3C018581.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EIQ8 (uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC111434517 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.23e-14
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 10  KKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGNTIRYRLHVQ 69
           +KWI++PSV  PC+Q +AE  V+EF +KY   L + +V EGWY EL    N+++YRLH++
Sbjct: 218 EKWIQIPSVKEPCVQVVAEFAVDEFNRKYGNILKFNSVYEGWYWELSP--NSLKYRLHIK 277

Query: 70  AYDCLRRLLKFEAILLQQHAQN 91
           A D L R L +E ++ +   Q+
Sbjct: 278 AIDFLERCLNYEFVVFEVKYQS 297

The following BLAST results are available for this feature:

BLAST of MELO3C018581.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34265.1	4.78e-74	100.00	phloem filament protein [Cucumis melo subsp. melo] >KAA0031426.1 phloem filament...	[more]
TYK06877.1	1.86e-68	97.14	phloem filament protein [Cucumis melo var. makuwa]	[more]
KAE8645824.1	4.68e-31	87.10	hypothetical protein Csa_017165 [Cucumis sativus]	[more]
XP_038887119.1	5.03e-27	52.43	uncharacterized protein LOC120077304 [Benincasa hispida]	[more]
KAG6588835.1	2.53e-14	43.90	hypothetical protein SDJN03_17400, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MELO3C018581.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C018581.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SN25	2.31e-74	100.00	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GCR7	2.31e-74	100.00	Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3C4U6	8.99e-69	97.14	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K471	9.84e-67	87.16	Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G067340 PE=4 SV=1	[more]
A0A6J1EIQ8	1.23e-14	43.90	uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC1114345...	[more]

BLAST of MELO3C018581.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009994	Phloem filament PP1	PFAM	PF07430	PP1	coord: 21..91 e-value: 1.1E-17 score: 63.8
None	No IPR available	GENE3D	3.10.450.10		coord: 17..107 e-value: 1.2E-6 score: 30.3
None	No IPR available	PANTHER	PTHR47116:SF5	PHLOEM FILAMENT PROTEIN	coord: 6..106
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 20..94
IPR027214	Cystatin	PANTHER	PTHR47116	PHLOEM FILAMENT PROTEIN	coord: 6..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018581.jh1.t1	MELO3C018581.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity