MELO3C018557.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C018557.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr01: 1141416 .. 1141746 (+)
RNA-Seq Expression	MELO3C018557.jh1
Synteny	MELO3C018557.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTTGTTTGTATAATTTTCTTAGAAAATATTCATCTAACATCAACATTCTATTATTGATATTTTCATCGTACATTTTCATAAAATTGACCCCAACATTATAAACAATGTATAAATGACCATACATCGATGCAAAACGAACATCTGTCACCGCTGTCCTCTATAACGGTGCTCACATTACTGTTGTTCTTGGAGCACTGCTGCAAGGAAGAAACTCACACCATCATCGTTCACCATCAGAGGGAGAGGGAGGGAGATGGAGATGCCACCGAAGGAGAGCTGCCTCACTGTTGGACAAATACGTCACCAGATCTGCGCACAGTTGGCTAA

mRNA sequence

AATTTTTGTTTGTATAATTTTCTTAGAAAATATTCATCTAACATCAACATTCTATTATTGATATTTTCATCGTACATTTTCATAAAATTGACCCCAACATTATAAACAATGTATAAATGACCATACATCGATGCAAAACGAACATCTGTCACCGCTGTCCTCTATAACGGTGCTCACATTACTGTTGTTCTTGGAGCACTGCTGCAAGGAAGAAACTCACACCATCATCGTTCACCATCAGAGGGAGAGGGAGGGAGATGGAGATGCCACCGAAGGAGAGCTGCCTCACTGTTGGACAAATACGTCACCAGATCTGCGCACAGTTGGCTAA

Coding sequence (CDS)

ATGCAAAACGAACATCTGTCACCGCTGTCCTCTATAACGGTGCTCACATTACTGTTGTTCTTGGAGCACTGCTGCAAGGAAGAAACTCACACCATCATCGTTCACCATCAGAGGGAGAGGGAGGGAGATGGAGATGCCACCGAAGGAGAGCTGCCTCACTGTTGGACAAATACGTCACCAGATCTGCGCACAGTTGGCTAA

Protein sequence

MQNEHLSPLSSITVLTLLLFLEHCCKEETHTIIVHHQREREGDGDATEGELPHCWTNTSPDLRTVG

Homology

[Close]

BLAST of MELO3C018557.jh1 vs. NCBI nr
Match: TYK06853.1 (uncharacterized protein E5676_scaffold13G001570 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 2.79e-26
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 21  LEHCCKEETHTIIVHHQREREGDGDATEGELPHCWTNTSPDLRTVG 66
           ++HCCKEETHTIIVHHQREREGDGDATEGELPHCWTNTSPDLRTVG
Sbjct: 160 MQHCCKEETHTIIVHHQREREGDGDATEGELPHCWTNTSPDLRTVG 205

[Close]

BLAST of MELO3C018557.jh1 vs. NCBI nr
Match: KAA0031402.1 (uncharacterized protein E6C27_scaffold139G001580 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 7.92e-26
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 21  LEHCCKEETHTIIVHHQREREGDGDATEGELPHCWTNTSPDLRTVG 66
           ++HCCKEETHTIIVHHQREREGDGDATEGELPHCWTNTSPDLRTVG
Sbjct: 206 MQHCCKEETHTIIVHHQREREGDGDATEGELPHCWTNTSPDLRTVG 251

[Close]

BLAST of MELO3C018557.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C4J8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001570 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 1.35e-26
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 21  LEHCCKEETHTIIVHHQREREGDGDATEGELPHCWTNTSPDLRTVG 66
           ++HCCKEETHTIIVHHQREREGDGDATEGELPHCWTNTSPDLRTVG
Sbjct: 160 MQHCCKEETHTIIVHHQREREGDGDATEGELPHCWTNTSPDLRTVG 205

[Close]

BLAST of MELO3C018557.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SK16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001580 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 3.83e-26
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 21  LEHCCKEETHTIIVHHQREREGDGDATEGELPHCWTNTSPDLRTVG 66
           ++HCCKEETHTIIVHHQREREGDGDATEGELPHCWTNTSPDLRTVG
Sbjct: 206 MQHCCKEETHTIIVHHQREREGDGDATEGELPHCWTNTSPDLRTVG 251

The following BLAST results are available for this feature:

BLAST of MELO3C018557.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06853.1	2.79e-26	95.65	uncharacterized protein E5676_scaffold13G001570 [Cucumis melo var. makuwa]	[more]
KAA0031402.1	7.92e-26	95.65	uncharacterized protein E6C27_scaffold139G001580 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C018557.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C018557.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4J8	1.35e-26	95.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SK16	3.83e-26	95.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C018557.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018557.jh1.t1	MELO3C018557.jh1.t1	mRNA