MELO3C018524 (gene) Melon (DHL92) v4

Overview


Name	MELO3C018524
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Zinc finger, LIM-type
Location	chr01: 911890 .. 913489 (+)
RNA-Seq Expression	MELO3C018524
Synteny	MELO3C018524

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGCTTTGCAGGAACCACACAGAAATGCATGGCTTGCGAGAAGACCGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGAGTGTTCCATAAGGTTTGCTTCCGATGCTACCATTGTAGAGGCACTCTCAAGGTAATGTAATATATGTGTGTGTGTTTCTGTATCGAAAACAATTTTACGAACATGCATTGGATGCTTGTTTGATGACAATGATTTCGATTTGAAAATAATTTCTAAAAGAAAGAGAAAAAGAAAAAGAAAATTTGAACAAATAGGTTAATTAATTGATTTGTATATACCTAATATGCTATATATGGTTTTGCAGCTTAGCAACTATTGTTCCTTTGAGGGAGTGCTCTATTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGCTTTGAAGGCAATTTTTCTTTTTCCTTTTTCTTTTTAATTTCAAACCACACCCTCTATATAATTTTCCTATCTTTGCAGAATTAGAACATTTGAAATTTATTTTAAACTTTATATATACATATACTGTAAGTTTTTCCAAAAATGATAGGGTATAATATAATTCTAAAATCGAATATTTTTCTTTTCATCAGGAACTCCAAAACTCATGAAACCAGAAAAGCCCAGCGAAAATGAGGTAATATTCTTTTTATCAATTAATTATACTTATATATATATATATATATATAAAAACAATGTCGAGAAACCAAATTATAATCAAACAAGATTTGATTTTGGATTGAACTTTGGACATGAACAGAATGCAAAGTCAGTGTCCAACATGTTTGGTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTAATACTTTACAATAAAAAGAAATATAGTTTATCAAACAAAAATTACTGATGAGTTATTTATTATTACTATCATATAGAGTGTTTGTTACTTTGATACATAAAAAAATTCAATTTCAACGATCATTTAAAATATACACTATATCGATCTCAAGGTTAGAAGTTAGGCATAAAAATGAGTATAAATATAAAAATGTATAGGAAATTGGTTCTTTCACTCCACACATATCGTCCAAAAAAAGTTGAAGATGTTGTGTTTGTGGGTATAGGTAACGGTGAACGGGACGGCGTACCACAAAAGCTGCTTTAAATGTAGCCATGGAGGATGCACAATAAGTCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAAGGAAATTACAGCCAACTTGAAACTGAGCGCCAAAAGAACAATTCAGCAGTGGCAGCGGCAATCAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAGCAATATATGATATATCAATCTCTCACATCTTTTAATTCTTCACACCTTCAAAAAAATCAAATATTGTTGAATATTGTTTGTTGCAAAATTTGTGTTGTTTGTTTTCTCCATTTCTTTAAAAGTGGATTATTATTATTATTATTATTATCATTCTCTGTGGAAGGTCAGTTTGTTGATGATGTTTTCACCATTTTTAGTTGTAAACGTTTTAACAAACTATTTATAT

mRNA sequence

ATGGCTAGCTTTGCAGGAACCACACAGAAATGCATGGCTTGCGAGAAGACCGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGAGTGTTCCATAAGAGGCACTCTCAAGGAACTCCAAAACTCATGAAACCAGAAAAGCCCAGCGAAAATGAGAATGCAAAGTCAGTGTCCAACATGTTTGGTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTAACGGTGAACGGGACGGCGTACCACAAAAGCTGCTTTAAATGTAGCCATGGAGGATGCACAATAAGTCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAAGGAAATTACAGCCAACTTGAAACTGAGCGCCAAAAGAACAATTCAGCAGTGGCAGCGGCAATCAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAGCAATATATGATATATCAATCTCTCACATCTTTTAATTCTTCACACCTTCAAAAAAATCAAATATTGTTGAATATTGTTTGTTGCAAAATTTGTGTTGTTTGTTTTCTCCATTTCTTTAAAAGTGGATTATTATTATTATTATTATTATCATTCTCTGTGGAAGGTCAGTTTGTTGATGATGTTTTCACCATTTTTAGTTGTAAACGTTTTAACAAACTATTTATAT

Coding sequence (CDS)

ATGGCTAGCTTTGCAGGAACCACACAGAAATGCATGGCTTGCGAGAAGACCGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGAGTGTTCCATAAGAGGCACTCTCAAGGAACTCCAAAACTCATGAAACCAGAAAAGCCCAGCGAAAATGAGAATGCAAAGTCAGTGTCCAACATGTTTGGTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTAACGGTGAACGGGACGGCGTACCACAAAAGCTGCTTTAAATGTAGCCATGGAGGATGCACAATAAGTCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAAGGAAATTACAGCCAACTTGAAACTGAGCGCCAAAAGAACAATTCAGCAGTGGCAGCGGCAATCAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAG

Protein sequence

MASFAGTTQKCMACEKTVYLVDKLTADNRVFHKRHSQGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNNSAVAAAIKLTTPMEIAAES

Homology

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BLAST of MELO3C018524 vs. NCBI nr
Match: KAA0031371.1 (LIM domain protein GLIM1a [Cucumis melo var. makuwa] >TYK06823.1 LIM domain protein GLIM1a [Cucumis melo var. makuwa])

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 156/201 (77.61%), Postives = 158/201 (78.61%), Query Frame = 0


Query: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHK--------------------------- 60
           MASFAGTTQKCMACEKTVYLVDKLTADNRVFHK                           
Sbjct: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHKVCFRCYHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  --------------RHSQGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                         +  +GTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 161
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

[Close]

BLAST of MELO3C018524 vs. NCBI nr
Match: XP_004136935.1 (LIM domain-containing protein WLIM1 [Cucumis sativus] >KGN43845.1 hypothetical protein Csa_017260 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 1.8e-73
Identity = 147/201 (73.13%), Postives = 154/201 (76.62%), Query Frame = 0


Query: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHK--------------------------- 60
           MASF+GTTQKCMACEKTVYLVDKLTADNRVFHK                           
Sbjct: 1   MASFSGTTQKCMACEKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  --------------RHSQGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                         +  +GTPK+M+ EKPSENENAKSVSNMFGGTRDKCSGCTKTVY IE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKVMRSEKPSENENAKSVSNMFGGTRDKCSGCTKTVYLIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 161
           KVTVNG AYHKSCFKCSHGGCTISPS+YIAHEGKLYCKHHHIQLF EKGNYSQLETERQK
Sbjct: 121 KVTVNGNAYHKSCFKCSHGGCTISPSSYIAHEGKLYCKHHHIQLFMEKGNYSQLETERQK 180

[Close]

BLAST of MELO3C018524 vs. NCBI nr
Match: XP_038888760.1 (LIM domain-containing protein WLIM1-like [Benincasa hispida])

HSP 1 Score: 275.8 bits (704), Expect = 2.4e-70
Identity = 142/201 (70.65%), Postives = 153/201 (76.12%), Query Frame = 0


Query: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHK--------------------------- 60
           MASFAGTTQKCMAC+KTVYLVDKLTADNRVFHK                           
Sbjct: 1   MASFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  --------------RHSQGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                         +  +GTPK++K +KP+ENENAKSVSNMF GTRDKCSGCTKTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKVVKLDKPTENENAKSVSNMFAGTRDKCSGCTKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 161
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

[Close]

BLAST of MELO3C018524 vs. NCBI nr
Match: XP_023553857.1 (LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.6 bits (693), Expect = 4.5e-69
Identity = 137/201 (68.16%), Postives = 146/201 (72.64%), Query Frame = 0


Query: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHK--------------------------- 60
           MASFAGTTQKCMAC+KTVYLVDKLTADNR+FHK                           
Sbjct: 1   MASFAGTTQKCMACDKTVYLVDKLTADNRIFHKPCFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  --------------RHSQGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                         +  +GTPK+ KPEKP+ENENAKSVS+MFGGTRDKC+GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKITKPEKPTENENAKSVSSMFGGTRDKCAGCIKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 161
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

[Close]

BLAST of MELO3C018524 vs. NCBI nr
Match: KAG6571916.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271.6 bits (693), Expect = 4.5e-69
Identity = 137/201 (68.16%), Postives = 146/201 (72.64%), Query Frame = 0


Query: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHK--------------------------- 60
           MASFAGTTQKCMAC+KTVYLVDKLTADNR+FHK                           
Sbjct: 111 MASFAGTTQKCMACDKTVYLVDKLTADNRIFHKPCFRCYHCKGTLKLSNYCSFEGVLYCR 170

Query: 61  --------------RHSQGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                         +  +GTPK+ KPEKP+ENENAKSVS+MFGGTRDKC+GC KTVYPIE
Sbjct: 171 PHYDQLFKRTGSLDKSFEGTPKITKPEKPTENENAKSVSSMFGGTRDKCAGCIKTVYPIE 230

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 161
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 231 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 290

[Close]

BLAST of MELO3C018524 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 9.4e-54
Identity = 111/189 (58.73%), Postives = 123/189 (65.08%), Query Frame = 0


Query: 3   SFAGTTQKCMACEKTVYLVDKLTADNRVFHK----------------------------- 62
           +FAGTTQKCMAC+KTVYLVDKLTADNRV+HK                             
Sbjct: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61

Query: 63  ------------RHSQGTPKLMKPEKPSENEN--AKSVSNMFGGTRDKCSGCTKTVYPIE 122
                       +  +GTPK+ KP++P E E      VSNMFGGTR+KC GC KTVYPIE
Sbjct: 62  FDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIE 121

Query: 123 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE--TER 147
           KV+VNGT YHKSCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE   E 
Sbjct: 122 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGGGEN 181

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BLAST of MELO3C018524 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.8e-47
Identity = 99/179 (55.31%), Postives = 113/179 (63.13%), Query Frame = 0


Query: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHK--------------------------R 60
           M SF GTTQKC  CEKTVYLVDKL A+ RV+HK                          R
Sbjct: 1   MKSFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCR 60

Query: 61  HS---------------QGTPKLMKPEK--PSENENAKSVSNMFGGTRDKCSGCTKTVYP 120
           H                 GTPK  KPE+    E ++A  +S+ F GTRDKC+ C K VYP
Sbjct: 61  HHFDQLFKRTGSLEKSFDGTPK-FKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYP 120

Query: 121 IEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETE 137
           IE+V V+GTAYH++CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLFK+KGNYSQLE E
Sbjct: 121 IERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVE 178

[Close]

BLAST of MELO3C018524 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-35
Identity = 85/187 (45.45%), Postives = 95/187 (50.80%), Query Frame = 0


Query: 3   SFAGTTQKCMACEKTVYLVDKLTADNRVFHKR---------------------------- 62
           SF GT QKC ACEKTVY V+ L+AD   +HK                             
Sbjct: 2   SFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPH 61

Query: 63  ---------------HSQGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 122
                           S   P   KP  P  N     ++ MF GT+DKC+ CTKTVYPIE
Sbjct: 62  FEQLFKESGSFSKNFQSPAKPLTDKP-TPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 121

Query: 123 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 147
           KVTV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L      
Sbjct: 122 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 181

[Close]

BLAST of MELO3C018524 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-34
Identity = 92/199 (46.23%), Postives = 107/199 (53.77%), Query Frame = 0


Query: 3   SFAGTTQKCMACEKTVYLVDKLTADNRVFHK-----RHSQGTPKL-----------MKP- 62
           SF GT QKC ACEKTVY V+ L+AD   +HK      H +   +L            KP 
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  ------EKPSENENAKS------------------VSNMFGGTRDKCSGCTKTVYPIEKV 122
                 E  S N+N +S                  V+  F GT++KC+ C+KTVYPIEKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNN 161
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

[Close]

BLAST of MELO3C018524 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-29
Identity = 67/195 (34.36%), Postives = 100/195 (51.28%), Query Frame = 0


Query: 3   SFAGTTQKCMACEKTVYLVDKLTADNRVFHK-----RHSQGTPKLM-------------- 62
           SF GT  KC  C+KTVY+VD L+ +   +HK      H +GT ++               
Sbjct: 2   SFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTH 61

Query: 63  ------------------KPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIEKVTVNG 122
                             K EKP        +S++F GT+DKC+ C KTVYP+EK+ + G
Sbjct: 62  FEQLFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQMEG 121

Query: 123 TAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNNSAVA 161
             +HK+CF+C+HGGCT++ S+Y + +  LYC+HH  QLF EKGNY+ +        +A  
Sbjct: 122 ECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRTASG 181

[Close]

BLAST of MELO3C018524 vs. ExPASy TrEMBL
Match: A0A5A7SP97 (LIM domain protein GLIM1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001270 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.7e-79
Identity = 156/201 (77.61%), Postives = 158/201 (78.61%), Query Frame = 0


Query: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHK--------------------------- 60
           MASFAGTTQKCMACEKTVYLVDKLTADNRVFHK                           
Sbjct: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHKVCFRCYHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  --------------RHSQGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                         +  +GTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 161
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

[Close]

BLAST of MELO3C018524 vs. ExPASy TrEMBL
Match: A0A0A0K2E5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071340 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.5e-74
Identity = 147/201 (73.13%), Postives = 154/201 (76.62%), Query Frame = 0


Query: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHK--------------------------- 60
           MASF+GTTQKCMACEKTVYLVDKLTADNRVFHK                           
Sbjct: 1   MASFSGTTQKCMACEKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  --------------RHSQGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                         +  +GTPK+M+ EKPSENENAKSVSNMFGGTRDKCSGCTKTVY IE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKVMRSEKPSENENAKSVSNMFGGTRDKCSGCTKTVYLIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 161
           KVTVNG AYHKSCFKCSHGGCTISPS+YIAHEGKLYCKHHHIQLF EKGNYSQLETERQK
Sbjct: 121 KVTVNGNAYHKSCFKCSHGGCTISPSSYIAHEGKLYCKHHHIQLFMEKGNYSQLETERQK 180

[Close]

BLAST of MELO3C018524 vs. ExPASy TrEMBL
Match: A0A6J1GLG2 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111455348 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.2e-69
Identity = 137/201 (68.16%), Postives = 146/201 (72.64%), Query Frame = 0


Query: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHK--------------------------- 60
           MASFAGTTQKCMAC+KTVYLVDKLTADNR+FHK                           
Sbjct: 1   MASFAGTTQKCMACDKTVYLVDKLTADNRIFHKPCFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  --------------RHSQGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                         +  +GTPK+ KPEKP+ENENAKSVS+MFGGTRDKC+GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKITKPEKPTENENAKSVSSMFGGTRDKCAGCIKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 161
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

[Close]

BLAST of MELO3C018524 vs. ExPASy TrEMBL
Match: A0A6J1I4V6 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111471016 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.8e-68
Identity = 135/201 (67.16%), Postives = 145/201 (72.14%), Query Frame = 0


Query: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHK--------------------------- 60
           MASF GTTQ+CMAC+KTVYLVDKLTADNR+FHK                           
Sbjct: 1   MASFVGTTQRCMACDKTVYLVDKLTADNRIFHKPCFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  --------------RHSQGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                         +  +GTPK+ KPEKP+ENENAKSVS+MFGGTRDKC+GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKITKPEKPTENENAKSVSSMFGGTRDKCAGCIKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 161
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

[Close]

BLAST of MELO3C018524 vs. ExPASy TrEMBL
Match: A0A6J1D4V0 (LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC111017319 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.6e-67
Identity = 138/200 (69.00%), Postives = 149/200 (74.50%), Query Frame = 0


Query: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHKR-----HSQGTPKL------------- 60
           MASF+GTTQKCMACEKTVYLVDKLTADNRVFHK      H +GT KL             
Sbjct: 1   MASFSGTTQKCMACEKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  ----------------------MKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIEK 120
                                 +KPEKP+E ENAKSVSNMFGGTRDKCSGCTKTVYPIEK
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKVKPEKPTETENAKSVSNMFGGTRDKCSGCTKTVYPIEK 120

Query: 121 VTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKN 161
           VTVNGTAYHK+CFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLF EKGNYSQLETERQKN
Sbjct: 121 VTVNGTAYHKTCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFMEKGNYSQLETERQKN 180

[Close]

BLAST of MELO3C018524 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 211.1 bits (536), Expect = 6.7e-55
Identity = 111/189 (58.73%), Postives = 123/189 (65.08%), Query Frame = 0


Query: 3   SFAGTTQKCMACEKTVYLVDKLTADNRVFHK----------------------------- 62
           +FAGTTQKCMAC+KTVYLVDKLTADNRV+HK                             
Sbjct: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61

Query: 63  ------------RHSQGTPKLMKPEKPSENEN--AKSVSNMFGGTRDKCSGCTKTVYPIE 122
                       +  +GTPK+ KP++P E E      VSNMFGGTR+KC GC KTVYPIE
Sbjct: 62  FDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIE 121

Query: 123 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE--TER 147
           KV+VNGT YHKSCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE   E 
Sbjct: 122 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGGGEN 181

[Close]

BLAST of MELO3C018524 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-36
Identity = 85/187 (45.45%), Postives = 95/187 (50.80%), Query Frame = 0


Query: 3   SFAGTTQKCMACEKTVYLVDKLTADNRVFHKR---------------------------- 62
           SF GT QKC ACEKTVY V+ L+AD   +HK                             
Sbjct: 2   SFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPH 61

Query: 63  ---------------HSQGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 122
                           S   P   KP  P  N     ++ MF GT+DKC+ CTKTVYPIE
Sbjct: 62  FEQLFKESGSFSKNFQSPAKPLTDKP-TPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 121

Query: 123 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 147
           KVTV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L      
Sbjct: 122 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 181

[Close]

BLAST of MELO3C018524 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-36
Identity = 92/199 (46.23%), Postives = 107/199 (53.77%), Query Frame = 0


Query: 3   SFAGTTQKCMACEKTVYLVDKLTADNRVFHK-----RHSQGTPKL-----------MKP- 62
           SF GT QKC ACEKTVY V+ L+AD   +HK      H +   +L            KP 
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  ------EKPSENENAKS------------------VSNMFGGTRDKCSGCTKTVYPIEKV 122
                 E  S N+N +S                  V+  F GT++KC+ C+KTVYPIEKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNN 161
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

[Close]

BLAST of MELO3C018524 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-36
Identity = 92/199 (46.23%), Postives = 107/199 (53.77%), Query Frame = 0


Query: 3   SFAGTTQKCMACEKTVYLVDKLTADNRVFHK-----RHSQGTPKL-----------MKP- 62
           SF GT QKC ACEKTVY V+ L+AD   +HK      H +   +L            KP 
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  ------EKPSENENAKS------------------VSNMFGGTRDKCSGCTKTVYPIEKV 122
                 E  S N+N +S                  V+  F GT++KC+ C+KTVYPIEKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNN 161
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

[Close]

BLAST of MELO3C018524 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-36
Identity = 92/199 (46.23%), Postives = 107/199 (53.77%), Query Frame = 0


Query: 3   SFAGTTQKCMACEKTVYLVDKLTADNRVFHK-----RHSQGTPKL-----------MKP- 62
           SF GT QKC ACEKTVY V+ L+AD   +HK      H +   +L            KP 
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  ------EKPSENENAKS------------------VSNMFGGTRDKCSGCTKTVYPIEKV 122
                 E  S N+N +S                  V+  F GT++KC+ C+KTVYPIEKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNN 161
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

The following BLAST results are available for this feature:

BLAST of MELO3C018524 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031371.1	1.4e-78	77.61	LIM domain protein GLIM1a [Cucumis melo var. makuwa] >TYK06823.1 LIM domain prot...	[more]
XP_004136935.1	1.8e-73	73.13	LIM domain-containing protein WLIM1 [Cucumis sativus] >KGN43845.1 hypothetical p...	[more]
XP_038888760.1	2.4e-70	70.65	LIM domain-containing protein WLIM1-like [Benincasa hispida]	[more]
XP_023553857.1	4.5e-69	68.16	LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6571916.1	4.5e-69	68.16	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. soro...	[more]

BLAST of MELO3C018524 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	9.4e-54	58.73	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	3.8e-47	55.31	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	2.6e-35	45.45	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	1.3e-34	46.23	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
Q1ECF5	1.6e-29	34.36	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]

BLAST of MELO3C018524 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SP97	6.7e-79	77.61	LIM domain protein GLIM1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0K2E5	8.5e-74	73.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071340 PE=4 SV=1	[more]
A0A6J1GLG2	2.2e-69	68.16	LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I4V6	1.8e-68	67.16	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1D4V0	2.6e-67	69.00	LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of MELO3C018524 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	6.7e-55	58.73	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	1.8e-36	45.45	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	9.1e-36	46.23	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	9.1e-36	46.23	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	9.1e-36	46.23	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 67..119 e-value: 4.5E-15 score: 66.1
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 68..123 e-value: 5.7E-13 score: 48.9
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 66..126 score: 12.8503
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 63..132 e-value: 3.0E-20 score: 74.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..58
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 37..145
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..33
None	No IPR available	PANTHER	PTHR24206:SF35	LIM DOMAIN-CONTAINING PROTEIN WLIM1	coord: 1..33
None	No IPR available	PANTHER	PTHR24206:SF35	LIM DOMAIN-CONTAINING PROTEIN WLIM1	coord: 37..145
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 68..128 e-value: 5.82654E-41 score: 129.898
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 94..133
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 60..93
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018524.1	MELO3C018524.1	mRNA