MELO3C018419.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C018419.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Cytochrome b6-f complex subunit 7
Location	chr01: 170209 .. 170808 (-)
RNA-Seq Expression	MELO3C018419.jh1
Synteny	MELO3C018419.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATACTATATATCATCATTTTTATTTTTATTTTCATGGCTAGTATCCAATGATTTGAGAAATCTTTAGCAATTCTAATCTGTTTATGAACCACCCAAATTCCTCTTACCTTATCCATTCCTCCCTTCTTCTTTCTCCATACAAACACTCTTTTTTCCTCATCCAATTCTCATCTCATCACCTTCCACTTTCTCTTCCACTCAGGTTCAATCCCTTCCCTTTTTTCCCTCAAAATCCCTTTCCCCATCTGGCTTTTCACTCAATATTGACTCTTCCTTCTCTTCCTCTTCTTTCAGGCATCATTCCAATGGCTACTGCCTCCGCTACCCTCTCGACGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGCTCAAGGCGGCAGAGGCAAACCAATGTCCATTATATTACTGGGCTTAACTCCTTTGGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTAGGCCTTCCCGTTTGTGCTGATCAATCATTTGCAAAAATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAGGGGAAAAACGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGGCTGGTTCTTATTGGAGTGGCTGTGGGGTTTGTTCTTCTTCGGATCGAAGCATCTGTGGAGGAGGCAGAGTGAAAAGCTACCAAAAATGGTTGATGATGATGAGGATATTGGTCAGTTATCTGAAATTTGTAAGTTAATCTGTTACTTTTACCAGTTATTGTAGAACTCAATTGTTTCCATCAGTCAAAACAATTGACAAAATTCATTTTGCCTATTTCTATCCCTGCTTTCTCATTACAAAATAATGGCATTGTAGTATATTGTTCATCTGCTTGAAAAAAAATGCATATTCTTGTAAATTCTTTTTGTGCTGTTTGGATCATGAGAAGAATAAGAAATGAACTTTGCAGGCAATTATTGTAAGATCAACTACTTCTTTGCGGAGACTGTCAAAAAAAAAAAAACAATAAAAGTATGGTTATCAAACGGAGTTTAAGTTATTGTGTTTTTGAATTCACTGTTAATATGTTTTGAAACGACAATTTTGTCTTAAGTAAACTGAAATAAAAAGGGAACAAGTTCAAAGAAAATGTGTCCACATACAATCCATTTCACGCTGTTACCGTTTTGGTAGTAGAAAGTTGGATTGTAAACAATCTCCTAAACCAAGCAACCAGCAGCTCAAATTGGTGTAAAGAACTTGGGTGTTAGTTAGTAGGTTGTTGAATGAAGATTGGTATGAAAATTAGACAGGAGACTGAA

mRNA sequence

CAAATACTATATATCATCATTTTTATTTTTATTTTCATGGCTAGTATCCAATGATTTGAGAAATCTTTAGCAATTCTAATCTGTTTATGAACCACCCAAATTCCTCTTACCTTATCCATTCCTCCCTTCTTCTTTCTCCATACAAACACTCTTTTTTCCTCATCCAATTCTCATCTCATCACCTTCCACTTTCTCTTCCACTCAGGCATCATTCCAATGGCTACTGCCTCCGCTACCCTCTCGACGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGCTCAAGGCGGCAGAGGCAAACCAATGTCCATTATATTACTGGGCTTAACTCCTTTGGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTAGGCCTTCCCGTTTGTGCTGATCAATCATTTGCAAAAATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAGGGGAAAAACGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGGCTGGTTCTTATTGGAGTGGCTGTGGGGTTTGTTCTTCTTCGGATCGAAGCATCTGTGGAGGAGGCAGAGTGAAAAGCTACCAAAAATGGTTGATGATGATGAGGATATTGGTCAGTTATCTGAAATTTGTAAGTTAATCTGTTACTTTTACCAGTTATTGTAGAACTCAATTGTTTCCATCAGTCAAAACAATTGACAAAATTCATTTTGCCTATTTCTATCCCTGCTTTCTCATTACAAAATAATGGCATTGTAGTATATTGTTCATCTGCTTGAAAAAAAATGCATATTCTTGTAAATTCTTTTTGTGCTGTTTGGATCATGAGAAGAATAAGAAATGAACTTTGCAGGCAATTATTGTAAGATCAACTACTTCTTTGCGGAGACTGTCAAAAAAAAAAAAACAATAAAAGTATGGTTATCAAACGGAGTTTAAGTTATTGTGTTTTTGAATTCACTGTTAATATGTTTTGAAACGACAATTTTGTCTTAAGTAAACTGAAATAAAAAGGGAACAAGTTCAAAGAAAATGTGTCCACATACAATCCATTTCACGCTGTTACCGTTTTGGTAGTAGAAAGTTGGATTGTAAACAATCTCCTAAACCAAGCAACCAGCAGCTCAAATTGGTGTAAAGAACTTGGGTGTTAGTTAGTAGGTTGTTGAATGAAGATTGGTATGAAAATTAGACAGGAGACTGAA

Coding sequence (CDS)

ATGGCTACTGCCTCCGCTACCCTCTCGACGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGCTCAAGGCGGCAGAGGCAAACCAATGTCCATTATATTACTGGGCTTAACTCCTTTGGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTAGGCCTTCCCGTTTGTGCTGATCAATCATTTGCAAAAATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAGGGGAAAAACGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGGCTGGTTCTTATTGGAGTGGCTGTGGGGTTTGTTCTTCTTCGGATCGAAGCATCTGTGGAGGAGGCAGAGTGA

Protein sequence

MATASATLSTAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASVEEAE

Homology

[Close]

BLAST of MELO3C018419.jh1 vs. NCBI nr
Match: XP_004136999.1 (uncharacterized protein LOC101210164 [Cucumis sativus] >KAE8645889.1 hypothetical protein Csa_017701 [Cucumis sativus])

HSP 1 Score: 143 bits (361), Expect = 1.85e-40
Identity = 99/169 (58.58%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 1   MNHPNSSYLIHS---SLLLSP------YKHSF-FLIQFSSHHLPLSLPLRHHSNGYCLRY 60
           MNHPNSSYLIHS     L SP        H   F   F S  +P++      S       
Sbjct: 1   MNHPNSSYLIHSFSIQTLFSPPPLPPSISHLITFNFLFHSGTIPMATASATLSTAMSSAA 60

Query: 61  PLDGHVHRRPHRRR-----------LKAAE--ANQCLPVCADQSFAKIVSSLKYPSKGKG 120
           P+     R+                LKA     +  LPVCADQSFAKIVSSLKYPSKGKG
Sbjct: 61  PISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSFAKIVSSLKYPSKGKG 120

Query: 121 KNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASVEEAE 146
           KNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASVEEAE
Sbjct: 121 KNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASVEEAE 169

[Close]

BLAST of MELO3C018419.jh1 vs. NCBI nr
Match: XP_008454894.1 (PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo])

HSP 1 Score: 138 bits (348), Expect = 4.57e-39
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 74  LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF 133
           LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF
Sbjct: 53  LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF 112

Query: 134 VLLRIEASVEEAE 146
           VLLRIEASVEEAE
Sbjct: 113 VLLRIEASVEEAE 125

[Close]

BLAST of MELO3C018419.jh1 vs. NCBI nr
Match: XP_023554105.1 (uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136 bits (342), Expect = 3.84e-38
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 74  LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF 133
           LPVCADQSFA IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGF
Sbjct: 54  LPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGF 113

Query: 134 VLLRIEASVEEAE 146
           VLLRIEASVEEAE
Sbjct: 114 VLLRIEASVEEAE 126

[Close]

BLAST of MELO3C018419.jh1 vs. NCBI nr
Match: XP_022952989.1 (uncharacterized protein LOC111455503 [Cucurbita moschata])

HSP 1 Score: 136 bits (342), Expect = 3.84e-38
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 74  LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF 133
           LPVCADQSFA IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGF
Sbjct: 54  LPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGF 113

Query: 134 VLLRIEASVEEAE 146
           VLLRIEASVEEAE
Sbjct: 114 VLLRIEASVEEAE 126

[Close]

BLAST of MELO3C018419.jh1 vs. NCBI nr
Match: XP_022972366.1 (uncharacterized protein LOC111470941 [Cucurbita maxima])

HSP 1 Score: 136 bits (342), Expect = 3.84e-38
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 74  LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF 133
           LPVCADQSFA IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGF
Sbjct: 54  LPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGF 113

Query: 134 VLLRIEASVEEAE 146
           VLLRIEASVEEAE
Sbjct: 114 VLLRIEASVEEAE 126

[Close]

BLAST of MELO3C018419.jh1 vs. ExPASy Swiss-Prot
Match: P80883 (Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea OX=3562 GN=petM PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-07
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 109 NAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASVEE 145
           NAA EIFRIAA++NGL L+GVA+GFVLLRIEA+VEE
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATVEE 36

[Close]

BLAST of MELO3C018419.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C0U4 (uncharacterized protein LOC103495201 OS=Cucumis melo OX=3656 GN=LOC103495201 PE=3 SV=1)

HSP 1 Score: 138 bits (348), Expect = 2.21e-39
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 74  LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF 133
           LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF
Sbjct: 53  LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF 112

Query: 134 VLLRIEASVEEAE 146
           VLLRIEASVEEAE
Sbjct: 113 VLLRIEASVEEAE 125

[Close]

BLAST of MELO3C018419.jh1 vs. ExPASy TrEMBL
Match: A0A6J1I5T0 (uncharacterized protein LOC111470941 OS=Cucurbita maxima OX=3661 GN=LOC111470941 PE=3 SV=1)

HSP 1 Score: 136 bits (342), Expect = 1.86e-38
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 74  LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF 133
           LPVCADQSFA IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGF
Sbjct: 54  LPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGF 113

Query: 134 VLLRIEASVEEAE 146
           VLLRIEASVEEAE
Sbjct: 114 VLLRIEASVEEAE 126

[Close]

BLAST of MELO3C018419.jh1 vs. ExPASy TrEMBL
Match: A0A6J1GND2 (uncharacterized protein LOC111455503 OS=Cucurbita moschata OX=3662 GN=LOC111455503 PE=3 SV=1)

HSP 1 Score: 136 bits (342), Expect = 1.86e-38
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 74  LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF 133
           LPVCADQSFA IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGF
Sbjct: 54  LPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGF 113

Query: 134 VLLRIEASVEEAE 146
           VLLRIEASVEEAE
Sbjct: 114 VLLRIEASVEEAE 126

[Close]

BLAST of MELO3C018419.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K4W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075020 PE=3 SV=1)

HSP 1 Score: 138 bits (348), Expect = 2.10e-38
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 74  LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF 133
           LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF
Sbjct: 129 LPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF 188

Query: 134 VLLRIEASVEEAE 146
           VLLRIEASVEEAE
Sbjct: 189 VLLRIEASVEEAE 201

[Close]

BLAST of MELO3C018419.jh1 vs. ExPASy TrEMBL
Match: A0A6J1C3G5 (uncharacterized protein LOC111008007 OS=Momordica charantia OX=3673 GN=LOC111008007 PE=3 SV=1)

HSP 1 Score: 124 bits (311), Expect = 9.99e-34
Identity = 67/75 (89.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 74  LPVCADQSFAKIVSSLKYPSKGKGKNGGG--ALSSTCNAAGEIFRIAAIINGLVLIGVAV 133
           LP+C D SFAKIVSSLKYPSKGKGKNGGG  ALSSTCNAAGEIFRIAAIINGLVL+GVAV
Sbjct: 54  LPLCPDHSFAKIVSSLKYPSKGKGKNGGGGGALSSTCNAAGEIFRIAAIINGLVLVGVAV 113

Query: 134 GFVLLRIEASVEEAE 146
           GFVLLRIEA VEE E
Sbjct: 114 GFVLLRIEAYVEETE 128

[Close]

BLAST of MELO3C018419.jh1 vs. TAIR 10
Match: AT2G26500.2 (cytochrome b6f complex subunit (petM), putative )

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-17
Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 75  PVCADQSFAKIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF 134
           P+C +Q FA +V SL      KG+ G GGALS+TCNA GEIF+IAAI+N L L+GVAVGF
Sbjct: 57  PLCTEQCFANVVMSL------KGRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGF 116

Query: 135 VLLRIEASVEEAE 147
           VLLRIE SVEEAE
Sbjct: 117 VLLRIETSVEEAE 123

[Close]

BLAST of MELO3C018419.jh1 vs. TAIR 10
Match: AT2G26500.1 (cytochrome b6f complex subunit (petM), putative )

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-17
Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 75  PVCADQSFAKIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAAIINGLVLIGVAVGF 134
           P+C +Q FA +V SL      KG+ G GGALS+TCNA GEIF+IAAI+N L L+GVAVGF
Sbjct: 57  PLCTEQCFANVVMSL------KGRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGF 116

Query: 135 VLLRIEASVEEAE 147
           VLLRIE SVEEAE
Sbjct: 117 VLLRIETSVEEAE 123

The following BLAST results are available for this feature:

BLAST of MELO3C018419.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136999.1	1.85e-40	58.58	uncharacterized protein LOC101210164 [Cucumis sativus] >KAE8645889.1 hypothetica...	[more]
XP_008454894.1	4.57e-39	100.00	PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo]	[more]
XP_023554105.1	3.84e-38	97.26	uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo]	[more]
XP_022952989.1	3.84e-38	97.26	uncharacterized protein LOC111455503 [Cucurbita moschata]	[more]
XP_022972366.1	3.84e-38	97.26	uncharacterized protein LOC111470941 [Cucurbita maxima]	[more]

BLAST of MELO3C018419.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80883	1.2e-07	80.56	Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea OX=3562 GN=pet...	[more]

BLAST of MELO3C018419.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C0U4	2.21e-39	100.00	uncharacterized protein LOC103495201 OS=Cucumis melo OX=3656 GN=LOC103495201 PE=...	[more]
A0A6J1I5T0	1.86e-38	97.26	uncharacterized protein LOC111470941 OS=Cucurbita maxima OX=3661 GN=LOC111470941...	[more]
A0A6J1GND2	1.86e-38	97.26	uncharacterized protein LOC111455503 OS=Cucurbita moschata OX=3662 GN=LOC1114555...	[more]
A0A0A0K4W4	2.10e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075020 PE=3 SV=1	[more]
A0A6J1C3G5	9.99e-34	89.33	uncharacterized protein LOC111008007 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

BLAST of MELO3C018419.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26500.2	1.0e-17	67.12	cytochrome b6f complex subunit (petM), putative	[more]
AT2G26500.1	1.0e-17	67.12	cytochrome b6f complex subunit (petM), putative	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012595	PetM of cytochrome b6/f complex subunit 7	PFAM	PF08041	PetM	coord: 91..118 e-value: 8.2E-10 score: 38.1
IPR012595	PetM of cytochrome b6/f complex subunit 7	HAMAP	MF_00396	Cytb6_f_PetM	coord: 89..121 score: 13.016713
None	No IPR available	PANTHER	PTHR34951	B6F COMPLEX SUBUNIT, PUTATIVE, EXPRESSED-RELATED	coord: 1..125
None	No IPR available	PANTHER	PTHR34951:SF1	B6F COMPLEX SUBUNIT, PUTATIVE, EXPRESSED-RELATED	coord: 1..125
None	No IPR available	SUPERFAMILY	103441	PetM subunit of the cytochrome b6f complex	coord: 90..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018419.jh1.t2	MELO3C018419.jh1.t2	mRNA
MELO3C018419.jh1.t3	MELO3C018419.jh1.t3	mRNA
MELO3C018419.jh1.t1	MELO3C018419.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009512	cytochrome b6f complex