MELO3C018150.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C018150.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr04: 9439141 .. 9439377 (+)
RNA-Seq ExpressionMELO3C018150.jh1
SyntenyMELO3C018150.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCTAGACCTAAATGCTGATAGAAACGATATTGAAGCTGGTCAAGAAGAAGAATTCGCAGACTCGATGGTAAATGCATCAGAGGTCCCCATTGAAGATGTTGGGGTCTTCGTTATGCCCATGGATTGTAGCGATGTTGAAGATGGTGTGCCACCTTTTCAATCCTTCCATCTAACGAACTACAATTCAAAGAGTTGTGTTTCAACATACAAAGCCTTACCACTTCTACCATGA

mRNA sequence

ATGGTCCTAGACCTAAATGCTGATAGAAACGATATTGAAGCTGGTCAAGAAGAAGAATTCGCAGACTCGATGGTAAATGCATCAGAGGTCCCCATTGAAGATGTTGGGGTCTTCGTTATGCCCATGGATTGTAGCGATGTTGAAGATGGTGTGCCACCTTTTCAATCCTTCCATCTAACGAACTACAATTCAAAGAGTTGTGTTTCAACATACAAAGCCTTACCACTTCTACCATGA

Coding sequence (CDS)

ATGGTCCTAGACCTAAATGCTGATAGAAACGATATTGAAGCTGGTCAAGAAGAAGAATTCGCAGACTCGATGGTAAATGCATCAGAGGTCCCCATTGAAGATGTTGGGGTCTTCGTTATGCCCATGGATTGTAGCGATGTTGAAGATGGTGTGCCACCTTTTCAATCCTTCCATCTAACGAACTACAATTCAAAGAGTTGTGTTTCAACATACAAAGCCTTACCACTTCTACCATGA

Protein sequence

MVLDLNADRNDIEAGQEEEFADSMVNASEVPIEDVGVFVMPMDCSDVEDGVPPFQSFHLTNYNSKSCVSTYKALPLLP
Homology
BLAST of MELO3C018150.jh1 vs. NCBI nr
Match: KAA0048578.1 (hypothetical protein E6C27_scaffold61G002170 [Cucumis melo var. makuwa] >TYK27166.1 hypothetical protein E5676_scaffold236G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 2.14e-13
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 0

Query: 1   MVLDLNADRNDIEAGQEEEFADSMVNASEVPIEDVGVFVMPMDCSDVEDGVPPF 54
           ++LDL+A RNDIEA Q+EE   +MV+ASEV IED  +FV+PMD SDVEDGVPPF
Sbjct: 110 VILDLDAVRNDIEADQQEELVGAMVDASEVSIEDAWIFVVPMDYSDVEDGVPPF 163

BLAST of MELO3C018150.jh1 vs. NCBI nr
Match: KAA0036828.1 (hypothetical protein E6C27_scaffold20G001290 [Cucumis melo var. makuwa] >TYJ95895.1 hypothetical protein E5676_scaffold110G001970 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 1.55e-09
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 0

Query: 6  NADRNDIEAGQEEEFADSMVNASEVPIEDVGVFVMPMDCSDVEDGVPPF 54
          +A+RNDI+A QEE   D  V+AS+VPIED+ + V+PMDCSDV+DG+ PF
Sbjct: 45 DANRNDIQADQEE-LVDPTVDASKVPIEDIRILVVPMDCSDVQDGMSPF 92

BLAST of MELO3C018150.jh1 vs. NCBI nr
Match: KAA0036741.1 (hypothetical protein E6C27_scaffold20G00180 [Cucumis melo var. makuwa] >TYJ95808.1 hypothetical protein E5676_scaffold110G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 1.45e-05
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 5   LNADRNDIEAGQEEEFADSMVNASEVPIEDVGVFVMPMDCSDVEDGVPPF 54
           LNA++NDIE+GQEEE ++  ++  EV        ++P+DCS+VEDG+PPF
Sbjct: 116 LNANKNDIESGQEEESSNPTIDTLEV-------LIVPIDCSNVEDGMPPF 158

BLAST of MELO3C018150.jh1 vs. NCBI nr
Match: KAA0035141.1 (hypothetical protein E6C27_scaffold57G002260 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 3.69e-05
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 1   MVLDLNADRNDIEAGQEEEFADSMVNASEVPIEDVGVFVM-PMDCSDVEDGVPP 53
           MV  ++ADRND EAG  EE  + +V+  EV  EDV  F + PMDCS +EDGVPP
Sbjct: 122 MVPSVDADRNDNEAG--EESINLVVDTLEVSSEDVEFFALVPMDCSSIEDGVPP 173

BLAST of MELO3C018150.jh1 vs. NCBI nr
Match: TYJ95941.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 48.5 bits (114), Expect = 3.05e-04
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 1   MVLDLNADRNDIEAGQEEEFADSMVNASEVPIEDVGVFVM-PMDCSDVEDGVPP 53
           MV  ++A RND E G  EE  + MV+  EV IEDV  F + PMDCS +EDGVPP
Sbjct: 61  MVPSVDAGRNDNEVG--EESINLMVDTLEVSIEDVEFFALVPMDCSLIEDGVPP 112

BLAST of MELO3C018150.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DTY6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00110 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.03e-13
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 0

Query: 1   MVLDLNADRNDIEAGQEEEFADSMVNASEVPIEDVGVFVMPMDCSDVEDGVPPF 54
           ++LDL+A RNDIEA Q+EE   +MV+ASEV IED  +FV+PMD SDVEDGVPPF
Sbjct: 110 VILDLDAVRNDIEADQQEELVGAMVDASEVSIEDAWIFVVPMDYSDVEDGVPPF 163

BLAST of MELO3C018150.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BBP1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001970 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.52e-10
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 0

Query: 6  NADRNDIEAGQEEEFADSMVNASEVPIEDVGVFVMPMDCSDVEDGVPPF 54
          +A+RNDI+A QEE   D  V+AS+VPIED+ + V+PMDCSDV+DG+ PF
Sbjct: 45 DANRNDIQADQEE-LVDPTVDASKVPIEDIRILVVPMDCSDVQDGMSPF 92

BLAST of MELO3C018150.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BBS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00910 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.03e-06
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 5   LNADRNDIEAGQEEEFADSMVNASEVPIEDVGVFVMPMDCSDVEDGVPPF 54
           LNA++NDIE+GQEEE ++  ++  EV        ++P+DCS+VEDG+PPF
Sbjct: 116 LNANKNDIESGQEEESSNPTIDTLEV-------LIVPIDCSNVEDGMPPF 158

BLAST of MELO3C018150.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T0M3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002260 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.79e-05
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 1   MVLDLNADRNDIEAGQEEEFADSMVNASEVPIEDVGVFVM-PMDCSDVEDGVPP 53
           MV  ++ADRND EAG  EE  + +V+  EV  EDV  F + PMDCS +EDGVPP
Sbjct: 122 MVPSVDADRNDNEAG--EESINLVVDTLEVSSEDVEFFALVPMDCSSIEDGVPP 173

BLAST of MELO3C018150.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BBE8 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00010 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.48e-04
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 1   MVLDLNADRNDIEAGQEEEFADSMVNASEVPIEDVGVFVM-PMDCSDVEDGVPP 53
           MV  ++A RND E G  EE  + MV+  EV IEDV  F + PMDCS +EDGVPP
Sbjct: 61  MVPSVDAGRNDNEVG--EESINLMVDTLEVSIEDVEFFALVPMDCSLIEDGVPP 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0048578.12.14e-1368.52hypothetical protein E6C27_scaffold61G002170 [Cucumis melo var. makuwa] >TYK2716... [more]
KAA0036828.11.55e-0961.22hypothetical protein E6C27_scaffold20G001290 [Cucumis melo var. makuwa] >TYJ9589... [more]
KAA0036741.11.45e-0550.00hypothetical protein E6C27_scaffold20G00180 [Cucumis melo var. makuwa] >TYJ95808... [more]
KAA0035141.13.69e-0555.56hypothetical protein E6C27_scaffold57G002260 [Cucumis melo var. makuwa][more]
TYJ95941.13.05e-0455.56F-box protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DTY61.03e-1368.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BBP17.52e-1061.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BBS27.03e-0650.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T0M31.79e-0555.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BBE81.48e-0455.56F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00010 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018150.jh1.t1MELO3C018150.jh1.t1mRNA