MELO3C018001 (gene) Melon (DHL92) v4

Overview


Name	MELO3C018001
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr07: 26172291 .. 26172919 (+)
RNA-Seq Expression	MELO3C018001
Synteny	MELO3C018001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTTCATTTTCTCTTAAACACAAAAAGAGATCAAGAATAAAGTTAGGATAAATGGAGGGTTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCACAGCTACAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTATTGATCACAGCCAACGATGAGTCGTCGCACCGACGAACACGATCGGATTACCAGCCACCAACATTTGAGTTTTTGGACCAACAACGACCGTCACAGGAGTTAACACATTCCCGCAGCGTCAACAAAGTCGCCTTTGGATCGTCTACTAGACCTAGTAATGGATTTGAATCTAACTTCTATTCTTATGCTGGTCAAGTTTCAAATAGGCCTGCTTATAGTTATGGTAATCCTCCTCGTTGAAAAAAATAATTAGCAAAATGTGAGGAGGAATATTATTATTGTTTAAAACTCTAATTAGCAATTTGGAAAATGTTTTTTCTTCTTCTTTTTATTTGTTGAATTGTATTGTTTGGTGAAGATCAATGTGTAAAGAGGTGGATCTCTCCATGAAAATATGGTCTGAGCAGCCACCTTTTATGAATTTGAAATTGTACATTAAATTTGTTGGAAAGTATTCTTTTCTTTAATTTGG

mRNA sequence

ATGCTTTTCATTTTCTCTTAAACACAAAAAGAGATCAAGAATAAAGTTAGGATAAATGGAGGGTTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCACAGCTACAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTATTGATCACAGCCAACGATGAGTCGTCGCACCGACGAACACGATCGGATTACCAGCCACCAACATTTGAGTTTTTGGACCAACAACGACCGTCACAGGAGTTAACACATTCCCGCAGCGTCAACAAAGTCGCCTTTGGATCGTCTACTAGACCTAGTAATGGATTTGAATCTAACTTCTATTCTTATGCTGGTCAAGTTTCAAATAGGCCTGCTTATAGTTATGGTAATCCTCCTCGTTGAAAAAAATAATTAGCAAAATGTGAGGAGGAATATTATTATTGTTTAAAACTCTAATTAGCAATTTGGAAAATGTTTTTTCTTCTTCTTTTTATTTGTTGAATTGTATTGTTTGGTGAAGATCAATGTGTAAAGAGGTGGATCTCTCCATGAAAATATGGTCTGAGCAGCCACCTTTTATGAATTTGAAATTGTACATTAAATTTGTTGGAAAGTATTCTTTTCTTTAATTTGG

Coding sequence (CDS)

ATGGAGGGTTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCACAGCTACAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTATTGATCACAGCCAACGATGAGTCGTCGCACCGACGAACACGATCGGATTACCAGCCACCAACATTTGAGTTTTTGGACCAACAACGACCGTCACAGGAGTTAACACATTCCCGCAGCGTCAACAAAGTCGCCTTTGGATCGTCTACTAGACCTAGTAATGGATTTGAATCTAACTTCTATTCTTATGCTGGTCAAGTTTCAAATAGGCCTGCTTATAGTTATGGTAATCCTCCTCGTTGA

Protein sequence

MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR

Homology

[Close]

BLAST of MELO3C018001 vs. NCBI nr
Match: KAA0044340.1 (putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa] >TYK29469.1 putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 229.2 bits (583), Expect = 1.8e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 114
           QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR
Sbjct: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 113

[Close]

BLAST of MELO3C018001 vs. NCBI nr
Match: KGN52765.1 (hypothetical protein Csa_015267 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 3.9e-51
Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 114
            QR ++ELTHSRSVNKVAFGSSTRPSNGFESNFYSY GQVSNRPAY+YGNP R
Sbjct: 61  -QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 112

[Close]

BLAST of MELO3C018001 vs. NCBI nr
Match: XP_038905929.1 (uncharacterized protein LOC120091851 [Benincasa hispida])

HSP 1 Score: 171.8 bits (434), Expect = 3.4e-39
Identity = 91/112 (81.25%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLLIT NDESSHRRTRSD+QPP  EF D
Sbjct: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLIT-NDESSHRRTRSDFQPPALEFSD 60

Query: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPP 113
            QR + EL HSRSV+K AFGSSTRPS GFES F SY GQV+N+P Y YGNPP
Sbjct: 61  -QRSTHELMHSRSVSKGAFGSSTRPSYGFESGFSSYPGQVTNKPTY-YGNPP 109

[Close]

BLAST of MELO3C018001 vs. NCBI nr
Match: KAG6576920.1 (hypothetical protein SDJN03_24494, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.8 bits (338), Expect = 4.6e-28
Identity = 79/113 (69.91%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRH YRSQSVGSSRSYHLL   NDESSHRRTRSD+QPP FE+LD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLL--TNDESSHRRTRSDFQPPRFEYLD 60

Query: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 114
            QR   EL HSRSV+K AFGS             SYAGQVSN      GN PR
Sbjct: 61  -QRSGHELMHSRSVSKGAFGS-------------SYAGQVSNN-----GNLPR 92

[Close]

BLAST of MELO3C018001 vs. NCBI nr
Match: KAG7014945.1 (NADH-ubiquinone oxidoreductase chain 4L, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 75/102 (73.53%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRH YRSQSVGSSRSYHLL   NDESSHRRTRSD+QPP FE+LD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLL--TNDESSHRRTRSDFQPPRFEYLD 60

Query: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSN 103
            QR   EL HSRSV+K AFGS             SYAGQVSN
Sbjct: 61  -QRSGHELMHSRSVSKGAFGS-------------SYAGQVSN 86

[Close]

BLAST of MELO3C018001 vs. ExPASy TrEMBL
Match: A0A5A7TM95 (Putative beta-D-xylosidase 5 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00650 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 8.7e-57
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 114
           QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR
Sbjct: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 113

[Close]

BLAST of MELO3C018001 vs. ExPASy TrEMBL
Match: A0A0A0KT06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000840 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.9e-51
Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 114
            QR ++ELTHSRSVNKVAFGSSTRPSNGFESNFYSY GQVSNRPAY+YGNP R
Sbjct: 61  -QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 112

[Close]

BLAST of MELO3C018001 vs. ExPASy TrEMBL
Match: A0A5N6QPG1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004630 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.0e-17
Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITAN--DESSHRRTRSDYQPPTFEF 60
           MEGLIPYL HA+KKQKP+HSYRS S GS+RSYHLL+ ++    SSHRRTRSD+QPP  EF
Sbjct: 1   MEGLIPYLVHAIKKQKPQHSYRSFSEGSTRSYHLLLNSDSLSGSSHRRTRSDFQPPNMEF 60

Query: 61  LDQQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSN 103
           ++Q+   ++L  S S NK +  +S+       S   SY+ ++ N
Sbjct: 61  VEQRSGVEQLVRSYSTNKTSTPTSS-------SKMASYSTRLPN 97

[Close]

BLAST of MELO3C018001 vs. ExPASy TrEMBL
Match: A0A6A6L260 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_011562 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.7e-16
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDE---SSHRRTRSDYQPPTFE 60
          MEGLIPYL HAMKKQ+P  S+RS S GSSRSYHLL+   D    SSHRRTRS++QPP  E
Sbjct: 1  MEGLIPYLLHAMKKQRPHKSHRSFSAGSSRSYHLLVGGGDSFNGSSHRRTRSEFQPPNME 60

Query: 61 FLDQQRPSQELTHSRSVNKVAFGSSTRPSNG 89
          FL+Q+   + L +S ++ K +  S +  + G
Sbjct: 61 FLEQRSDLEYLQYSSNLRKRSVNSPSTAAGG 91

[Close]

BLAST of MELO3C018001 vs. ExPASy TrEMBL
Match: B9SNE5 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0175590 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.5e-16
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITAN--DESSHRRTRSDYQPPTFEF 60
           MEGLIPYL HA++KQKP++SYRS SVGSSRSYHLL  A+    SSHRRTRS++QPPT E 
Sbjct: 1   MEGLIPYLLHAIRKQKPQNSYRSFSVGSSRSYHLLTGADSFSGSSHRRTRSEFQPPTMEL 60

Query: 61  LDQQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVS 102
           LD QR   E   S S+      +S + ++G +    SY  Q+S
Sbjct: 61  LD-QRQGLEYLRSGSLRNHRQVTSPKAASGSKLGTTSYPQQMS 102

[Close]

BLAST of MELO3C018001 vs. TAIR 10
Match: AT3G19615.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 42/73 (57.53%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKK-QKPRHS-YRSQSVGSSRSYHLLITAND------ESSHRRTRSDYQ 60
          MEGLIPYL HA+KK  KP H  YRS SVGSSRSY  L+   D       SSHRRTRSDY 
Sbjct: 1  MEGLIPYLIHAIKKDHKPDHQRYRSISVGSSRSYRPLMMGQDGSSSMQGSSHRRTRSDYN 60

Query: 61 PPTFEFLDQQRPS 66
          P        QR S
Sbjct: 61 PHVIMDKFDQRSS 73

The following BLAST results are available for this feature:

BLAST of MELO3C018001 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044340.1	1.8e-56	100.00	putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa] >TYK29469.1 p...	[more]
KGN52765.1	3.9e-51	93.81	hypothetical protein Csa_015267 [Cucumis sativus]	[more]
XP_038905929.1	3.4e-39	81.25	uncharacterized protein LOC120091851 [Benincasa hispida]	[more]
KAG6576920.1	4.6e-28	69.91	hypothetical protein SDJN03_24494, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014945.1	1.3e-27	73.53	NADH-ubiquinone oxidoreductase chain 4L, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of MELO3C018001 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C018001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TM95	8.7e-57	100.00	Putative beta-D-xylosidase 5 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KT06	1.9e-51	93.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000840 PE=4 SV=1	[more]
A0A5N6QPG1	4.0e-17	51.92	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004630 PE=4 SV=1	[more]
A0A6A6L260	5.7e-16	53.85	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_011562 PE=4 SV=1	[more]
B9SNE5	7.5e-16	54.37	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0175590 PE=4 SV=1	[more]

BLAST of MELO3C018001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19615.1	1.6e-10	57.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38370	BETA-1,4-XYLOSIDASE	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018001.1	MELO3C018001.1	mRNA