MELO3C018000 (gene) Melon (DHL92) v4

Overview


Name	MELO3C018000
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr07: 26169581 .. 26170205 (-)
RNA-Seq Expression	MELO3C018000
Synteny	MELO3C018000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGATATGGATAAATATATTGATTGATTGTCTTTGTTTGTTTCAGCTATAAATATAAGGCATGGGAAAGCCAATAAAAACCATTATATACTAGAAAGAGAGATCAGATCACATATATGGAGATGAAAAACAAGGTTGCTTTGGTGGCCATGGTGGTTGTGATGGTGGTTATGGCTCGATCGGCCACCGTCACCGCTGCCATGGATGAGGCCATTGAACTCCCAGCCAATAGTGAAGCGAGTTATTACGATACGCCACCGCCTCCTCGTGTTTGTCCTATTATGATATTACCATGCAAAACTGATTCTGAGTGTTCTCCATGCTATTGTGTTAATGGCTCCTGCATTTGACAAACAAAATGACGAGGAAAAAGAACAAGAAGAATAAAGTTTGTCATTGGTATTGATGTTTCGTTTGTGTTTTTTTTTTCCTTTTTTTTTTCTCTCTCTCTATGTTTAATGCAGAATAAACCTTTGCTTCTTTTTGCCCTTCAGCTTGTTGAAGTGCAATATATAACGTCCATTACTTTCATGTTAGTGTAAGTTCTATCAAAATAATGAATATATTTTTCGGTTTTTTGATTTCCTTGTGAACGACTAATGGAAGTCGAGAAAACTTTTGGTTG

mRNA sequence

AAGGATATGGATAAATATATTGATTGATTGTCTTTGTTTGTTTCAGCTATAAATATAAGGCATGGGAAAGCCAATAAAAACCATTATATACTAGAAAGAGAGATCAGATCACATATATGGAGATGAAAAACAAGGTTGCTTTGGTGGCCATGGTGGTTGTGATGGTGGTTATGGCTCGATCGGCCACCGTCACCGCTGCCATGGATGAGGCCATTGAACTCCCAGCCAATAGTGAAGCGAGTTATTACGATACGCCACCGCCTCCTCGTGTTTGTCCTATTATGATATTACCATGCAAAACTGATTCTGAGTGTTCTCCATGCTATTGTGTTAATGGCTCCTGCATTTGACAAACAAAATGACGAGGAAAAAGAACAAGAAGAATAAAGTTTGTCATTGGTATTGATGTTTCGTTTGTGTTTTTTTTTTCCTTTTTTTTTTCTCTCTCTCTATGTTTAATGCAGAATAAACCTTTGCTTCTTTTTGCCCTTCAGCTTGTTGAAGTGCAATATATAACGTCCATTACTTTCATGTTAGTGTAAGTTCTATCAAAATAATGAATATATTTTTCGGTTTTTTGATTTCCTTGTGAACGACTAATGGAAGTCGAGAAAACTTTTGGTTG

Coding sequence (CDS)

ATGGAGATGAAAAACAAGGTTGCTTTGGTGGCCATGGTGGTTGTGATGGTGGTTATGGCTCGATCGGCCACCGTCACCGCTGCCATGGATGAGGCCATTGAACTCCCAGCCAATAGTGAAGCGAGTTATTACGATACGCCACCGCCTCCTCGTGTTTGTCCTATTATGATATTACCATGCAAAACTGATTCTGAGTGTTCTCCATGCTATTGTGTTAATGGCTCCTGCATTTGA

Protein sequence

MEMKNKVALVAMVVVMVVMARSATVTAAMDEAIELPANSEASYYDTPPPPRVCPIMILPCKTDSECSPCYCVNGSCI

Homology

[Close]

BLAST of MELO3C018000 vs. NCBI nr
Match: KGN52766.1 (hypothetical protein Csa_015422 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 4.4e-30
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMARSATVTAAMDEAIELPANSEASYYDTPPPPRVCPIMILPC 60
          MEMKNKVALVAMVVVMVVM RSATVTAAMDE IELP N EASYYDTPPPPRVCPIMILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCYCVNGSCI 78
          KTDSECSPCYC NGSCI
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]

BLAST of MELO3C018000 vs. NCBI nr
Match: KAA0044341.1 (hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 6.6e-10
Identity = 48/79 (60.76%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMARSATVTAAMDEAIELPANSEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVMA+S T T   DE IEL      +        RVCP  ILPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVT-TITADETIELSGGENTA--------RVCPATILPC 60

Query: 61 KTDSECSPCYC--VNGSCI 78
          KTDSECSPC C   +GSCI
Sbjct: 61 KTDSECSPCICNLQSGSCI 70

[Close]

BLAST of MELO3C018000 vs. NCBI nr
Match: TYK29470.1 (hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 47/79 (59.49%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMARSATVTAAMDEAIELPANSEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVMA+S T T   DE IE+      +        RVCP  ILPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVT-TITADETIEVSGGENTA--------RVCPATILPC 60

Query: 61 KTDSECSPCYC--VNGSCI 78
          KTDSECSPC C   +GSCI
Sbjct: 61 KTDSECSPCICNLQSGSCI 70

[Close]

BLAST of MELO3C018000 vs. NCBI nr
Match: KGN52767.1 (hypothetical protein Csa_015168 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 9.5e-09
Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMARSATVTAAMDEAIELPANSEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVMA+S T T   DE IEL      +        RVCP  +LPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVT-TITADETIELSGGENTA--------RVCPATLLPC 60

Query: 61 KTDSECSPCYC--VNGSCI 78
          +TDSECSPC C   +G+C+
Sbjct: 61 ETDSECSPCICNVKSGACV 70

[Close]

BLAST of MELO3C018000 vs. ExPASy TrEMBL
Match: A0A0A0KY39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-30
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMARSATVTAAMDEAIELPANSEASYYDTPPPPRVCPIMILPC 60
          MEMKNKVALVAMVVVMVVM RSATVTAAMDE IELP N EASYYDTPPPPRVCPIMILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCYCVNGSCI 78
          KTDSECSPCYC NGSCI
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]

BLAST of MELO3C018000 vs. ExPASy TrEMBL
Match: A0A5A7TRY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00670 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.2e-10
Identity = 48/79 (60.76%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMARSATVTAAMDEAIELPANSEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVMA+S T T   DE IEL      +        RVCP  ILPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVT-TITADETIELSGGENTA--------RVCPATILPC 60

Query: 61 KTDSECSPCYC--VNGSCI 78
          KTDSECSPC C   +GSCI
Sbjct: 61 KTDSECSPCICNLQSGSCI 70

[Close]

BLAST of MELO3C018000 vs. ExPASy TrEMBL
Match: A0A5D3E1Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00670 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.1e-10
Identity = 47/79 (59.49%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMARSATVTAAMDEAIELPANSEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVMA+S T T   DE IE+      +        RVCP  ILPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVT-TITADETIEVSGGENTA--------RVCPATILPC 60

Query: 61 KTDSECSPCYC--VNGSCI 78
          KTDSECSPC C   +GSCI
Sbjct: 61 KTDSECSPCICNLQSGSCI 70

[Close]

BLAST of MELO3C018000 vs. ExPASy TrEMBL
Match: A0A0A0KWE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.6e-09
Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMARSATVTAAMDEAIELPANSEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVMA+S T T   DE IEL      +        RVCP  +LPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVT-TITADETIELSGGENTA--------RVCPATLLPC 60

Query: 61 KTDSECSPCYC--VNGSCI 78
          +TDSECSPC C   +G+C+
Sbjct: 61 ETDSECSPCICNVKSGACV 70

The following BLAST results are available for this feature:

BLAST of MELO3C018000 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52766.1	4.4e-30	93.51	hypothetical protein Csa_015422 [Cucumis sativus]	[more]
KAA0044341.1	6.6e-10	60.76	hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa]	[more]
TYK29470.1	1.5e-09	59.49	hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa]	[more]
KGN52767.1	9.5e-09	55.70	hypothetical protein Csa_015168 [Cucumis sativus]	[more]

BLAST of MELO3C018000 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C018000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY39	2.1e-30	93.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1	[more]
A0A5A7TRY5	3.2e-10	60.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E1Q5	7.1e-10	59.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KWE9	4.6e-09	55.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1	[more]

BLAST of MELO3C018000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018000.1	MELO3C018000.1	mRNA